BAC Information

Click to search

BAC

Clone NameB6Ng01-165H16
Chromosome5 (Build37)
Map Location 92,750,317 - 92,890,821
singlet/doubletdoublet
Overlap geneCxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2
Upstream geneBtc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1
Downstream geneGm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165H16.bB6Ng01-165H16.g
ACCDH957526DH957527
length1,1101,013
definitionDH957526|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H16, 5' end.DH957527|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,889,714 - 92,890,821)(92,750,317 - 92,751,335)
sequence
gaattcatcttgcttagaatgagtctctgaaatttaatcctagcaccatc
agaaaacaaacacaaaatatagatatgcacagagactttgatttgtgtgt
gtgccctccagggaactttatcatctacataaacctcctctgaggcttcc
actctaaagtgacagctgcttaacactgatggaggacccaggaccttaaa
gagttcacatctgaatctgaactttgccttgccttgctgctaaaggtcca
gccgccactttgctccaggggcaatggagccaccttgtggccaaaggtcc
ctgtgtgtctgtaagatctctgcgacgctggcatcattcagagcctccta
aagggaaggttaaatccacatctacaataagatgtaatacgagcctgccc
tggtggttcaggcctgtgataccagctactttctatggcaaaaacgggaa
gatcaaaaagcccagattgggctccagagtgagttcaaggttagcctggg
caacttagtgaggccctgtctcaaaatttacaaaaaggggcctggagctt
aggatagagatcagtagtagagtatttgtctattatgtgcaagaccacaa
agtctaagcagacagacagacagacagacagacagacacacacacacaca
cacacacacacacacacacacagagtaataggagaaagtgcagtagctga
actcttactccatataaagacaggaaggtcactggttggattttctgttt
agtctcaaacatttacatctcagtttctggcccttctgttaagggacaga
aagagagcaatgggtgttcttagggacactggttaacctgcctctgctct
gcagactgtcgtggatctggcccagctgaccctgctcagggagcttatcg
aagccatgcttgaaagcctatcagcagaagtgtttgtgattcaacaccgt
gcacgaactgctctgtgggctccaagatgagatcttggccctcgtccata
ttttcaacctgacgctccccgaatttcggcctgttctatgaggtaagttc
ctttcctgaacatggtctccagcacctagcgggggaagaaagagggaatc
acagccagaa
gaattcatctgaaacacacagtagccaaagggcagacaaagacattgaaa
aacatgtttattttggaatttagtgcacttttactgatatcactacgctt
tcacgaaatagcttcagagcacatatgctaatttgctttgaattaaaaat
tagagtacacatatgaagtcatactgtaggcatatgcatccaacataact
atttagtaaaaattacacaggctttggctagtcgttatgcatactaccca
gctgtcagatgcaagggtagctaactagttaggaaacaattttagacttt
ttttttttttttccaaagtaaattaccgaagggaggtggacaacgttttg
actgtgcaatgttgtttggatgggagtcccaccagcagcacaaaaaccac
ctgcatgcagcgccaggaatggcagtatttgagaaaaagcatgctcaaga
cggaacttctgcccagagacattcttttctatctaattcatcagacctcc
tctctagagcagtttccagctcccacacaggctaacttggccctgtccac
acttccactcgcagaatttactgcttcctgtagctcttaattcctttaaa
aatatctctgtaaagatttttatttgccgtctgagattatgggtgtatgt
catgggggcctgtgtacacctgtgcaatgcttgcagaggccagaagagag
aaatgggttccctggagctggagtcacaggtggccacaaggctcacgcac
acgtgggggtgggtgctgggaatggaactctggctctctctccagccctg
atctttccatttcaccactcctagcctgatgtggcaatccatacaatcat
acactgggatttctgcaatgagggagggaaggtggcagggaaattcatat
tcacctaagataacttgctaaaggatttggcagctcttttgttgactcct
aggagcttgtcctgatcagaatgaattagaggattttgttttgagtgagg
aagatctagtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_92889714_92890821
seq2: B6Ng01-165H16.b_44_1153 (reverse)

seq1  TTCTGGCTTGTG-TGCCCTC-TTCTT-CCCCGCTGTGTGCTGGAGA-CAT  46
      ||||||| |||| | ||||| ||||| |||||||  |||||||||| |||
seq2  TTCTGGC-TGTGATTCCCTCTTTCTTCCCCCGCTAGGTGCTGGAGACCAT  49

seq1  GTTCTAGGAAGGAAACTTACCTCATAGAACAGGCCGAAATTCGGGGAGAC  96
      |||| ||||| | ||||||||||||||||||||||||||||||||||| |
seq2  GTTC-AGGAAAGGAACTTACCTCATAGAACAGGCCGAAATTCGGGGAG-C  97

seq1  GTCAGGTTTGAAAATATGGACGAGGGACAAGATCTCATCTTTGTAGCCC-  145
      |||||| ||||||||||||||||||| |||||||||||| ||| ||||| 
seq2  GTCAGG-TTGAAAATATGGACGAGGGCCAAGATCTCATC-TTGGAGCCCA  145

seq1  CAGAGCAGTTCGTGCACGGTG-TGAATCACAAACAACTTCTGCTGATAGG  194
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  CAGAGCAGTTCGTGCACGGTGTTGAATCACAAAC-ACTTCTGCTGATAGG  194

seq1  CTTTC-AGCATGGCTTCGATAAGCTCCCTGAGCAGGGTCAGCTGGGCCAG  243
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGCATGGCTTCGATAAGCTCCCTGAGCAGGGTCAGCTGGGCCAG  244

seq1  ATCCACGACAGTCTGCAGAGCAGAGGCAGGTTAACCAGTGTCCCTAAGAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACGACAGTCTGCAGAGCAGAGGCAGGTTAACCAGTGTCCCTAAGAA  294

seq1  CACCCATTGGCTCTCTTTCTGTCCCTTAACAGAAGGGCCAGAAACTGAGA  343
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATT-GCTCTCTTTCTGTCCCTTAACAGAAGGGCCAGAAACTGAGA  343

seq1  TGTAAATGTTTGAGACTAAACAGAAAATCCAACCAGTGACCTTCCTGTCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGTTTGAGACTAAACAGAAAATCCAACCAGTGACCTTCCTGTCT  393

seq1  TTATATGGAGTAAGAGTTCAGCTACTGCACTTTCTCCTATTACTC--TGT  441
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TTATATGGAGTAAGAGTTCAGCTACTGCACTTTCTCCTATTACTCTGTGT  443

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCT  493

seq1  GTCTGTCTGCTTAGACTTTGTGGTCTTGCACATAATAGACAAATACTCTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTGCTTAGACTTTGTGGTCTTGCACATAATAGACAAATACTCTA  543

seq1  CTACTGATCTCTATCCTAAGCTCCAGGCCCCTTTTTGTAAATTTTGAGAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATCTCTATCCTAAGCTCCAGGCCCCTTTTTGTAAATTTTGAGAC  593

seq1  AGGGCCTCACTAAGTTGCCCAGGCTAACCTTGAACTCACTCTGGAGCCCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTCACTAAGTTGCCCAGGCTAACCTTGAACTCACTCTGGAGCCCA  643

seq1  ATCTGGGCTTTTTGATCTTCCCGTTTTTGCCATAGAAAGTAGCTGGTATC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGCTTTTTGATCTTCCCGTTTTTGCCATAGAAAGTAGCTGGTATC  693

seq1  ACAGGCCTGAACCACCAGGGCAGGCTCGTATTACATCTTATTGTAGATGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCTGAACCACCAGGGCAGGCTCGTATTACATCTTATTGTAGATGT  743

seq1  GGATTTAACCTTCCCTTTAGGAGGCTCTGAATGATGCCAGCGTCGCAGAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAACCTTCCCTTTAGGAGGCTCTGAATGATGCCAGCGTCGCAGAG  793

seq1  ATCTTACAGACACACAGGGACCTTTGGCCACAAGGTGGCTCCATTGCCCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACAGACACACAGGGACCTTTGGCCACAAGGTGGCTCCATTGCCCC  843

seq1  TGGAGCAAAGTGGCGGCTGGACCTTTAGCAGCAAGGCAAGGCAAAGTTCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAAAGTGGCGGCTGGACCTTTAGCAGCAAGGCAAGGCAAAGTTCA  893

seq1  GATTCAGATGTGAACTCTTTAAGGTCCTGGGTCCTCCATCAGTGTTAAGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGATGTGAACTCTTTAAGGTCCTGGGTCCTCCATCAGTGTTAAGC  943

seq1  AGCTGTCACTTTAGAGTGGAAGCCTCAGAGGAGGTTTATGTAGATGATAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCACTTTAGAGTGGAAGCCTCAGAGGAGGTTTATGTAGATGATAA  993

seq1  AGTTCCCTGGAGGGCACACACACAAATCAAAGTCTCTGTGCATATCTATA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTGGAGGGCACACACACAAATCAAAGTCTCTGTGCATATCTATA  1043

seq1  TTTTGTGTTTGTTTTCTGATGGTGCTAGGATTAAATTTCAGAGACTCATT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTTTGTTTTCTGATGGTGCTAGGATTAAATTTCAGAGACTCATT  1093

seq1  CTAAGCAAGATGAATTC  1108
      |||||||||||||||||
seq2  CTAAGCAAGATGAATTC  1110

seq1: chr5_92750317_92751335
seq2: B6Ng01-165H16.g_68_1080

seq1  GAATTCATCTGAAACACACAGTAGCCAAAGGGCAGACAAAGACATTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGAAACACACAGTAGCCAAAGGGCAGACAAAGACATTGAAA  50

seq1  AACATGTTTATTTTGGAATTTAGTGCACTTTTACTGATATCACTACGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTTATTTTGGAATTTAGTGCACTTTTACTGATATCACTACGCTT  100

seq1  TCACGAAATAGCTTCAGAGCACATATGCTAATTTGCTTTGAATTAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAAATAGCTTCAGAGCACATATGCTAATTTGCTTTGAATTAAAAAT  150

seq1  TAGAGTACACATATGAAGTCATACTGTAGGCATATGCATCCAACATAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTACACATATGAAGTCATACTGTAGGCATATGCATCCAACATAACT  200

seq1  ATTTAGTAAAAATTACACAGGCTTTGGCTAGTCGTTATGCATACTACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTAAAAATTACACAGGCTTTGGCTAGTCGTTATGCATACTACCCA  250

seq1  GCTGTCAGATGCAAGGGTAGCTAACTAGTTAGGAAACAATTTTAGACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAGATGCAAGGGTAGCTAACTAGTTAGGAAACAATTTTAGACTTT  300

seq1  TTTTTTTTTTTTCCAAAGTAAATTACCGAAGGGAGGTGGACAACGTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTCCAAAGTAAATTACCGAAGGGAGGTGGACAACGTTTTG  350

seq1  ACTGTGCAATGTTGTTTGGATGGGAGTCCCACCAGCAGCACAAAAACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCAATGTTGTTTGGATGGGAGTCCCACCAGCAGCACAAAAACCAC  400

seq1  CTGCATGCAGCGCCAGGAATGGCAGTATTTGAGAAAAAGCATGCTCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCAGCGCCAGGAATGGCAGTATTTGAGAAAAAGCATGCTCAAGA  450

seq1  CGGAACTTCTGCCCAGAGACATTCTTTTCTATCTAATTCATCAGACCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACTTCTGCCCAGAGACATTCTTTTCTATCTAATTCATCAGACCTCC  500

seq1  TCTCTAGAGCAGTTTCCAGCTCCCACACAGGCTAACTTGGCCCTGTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAGCAGTTTCCAGCTCCCACACAGGCTAACTTGGCCCTGTCCAC  550

seq1  ACTTCCACTCGCAGAATTTACTGCTTCCTGTAGCTCTTAATTCCTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACTCGCAGAATTTACTGCTTCCTGTAGCTCTTAATTCCTTTAAA  600

seq1  AATATCTCTGTAAAGATTTTTATTTGCCGTCTGAGATTATGGGTGTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCTGTAAAGATTTTTATTTGCCGTCTGAGATTATGGGTGTATGT  650

seq1  CATGGGGGCCTGTGTACACCTGTGCAATGCTTGCAGAGGCCAGAAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGGCCTGTGTACACCTGTGCAATGCTTGCAGAGGCCAGAAGAGAG  700

seq1  AAATGGGTTCCCTGGAGCTGGAGTCACAGGTGGCCACAAGGCTCACGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTTCCCTGGAGCTGGAGTCACAGGTGGCCACAAGGCTCACGCAC  750

seq1  ACGTGGGGGTGGGTGCTGGGAATGGAACTCTGGCTCCCTCTCCAGCCCTG  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACGTGGGGGTGGGTGCTGGGAATGGAACTCTGGCTCTCTCTCCAGCCCTG  800

seq1  ATCTTTCCATTTCACCACTCCTAGCCTGATGTGGCAATCCATACAATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCATTTCACCACTCCTAGCCTGATGTGGCAATCCATACAATCAT  850

seq1  ACACTGGGATTTCTGCAATGAGGGAGGGAAGGTGGCAAGGAAATTCATAT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACACTGGGATTTCTGCAATGAGGGAGGGAAGGTGGCAGGGAAATTCATAT  900

seq1  TCACCTAAGATAAACTTGCTAAAGGATTTGGCAGCTCTTTTGTTGACTCC  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAAGAT-AACTTGCTAAAGGATTTGGCAGCTCTTTTGTTGACTCC  949

seq1  TAGGGAGCTTGTCCTGATCAAGAATGATATTAGAGGAATTTTGTTTTGAG  1000
      || |||||||||||||||| ||||||| |||||||| |||||||||||||
seq2  TA-GGAGCTTGTCCTGATC-AGAATGA-ATTAGAGG-ATTTTGTTTTGAG  995

seq1  TGAGGAAAGATCTAGTATT  1019
      ||||| |||||||||| ||
seq2  TGAGG-AAGATCTAGTTTT  1013