BAC Information

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BAC

Clone NameB6Ng01-165K14
Chromosome5 (Build37)
Map Location 55,611,021 - 55,751,954
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165K14.bB6Ng01-165K14.g
ACCDH957659DH957660
length1,2211,010
definitionDH957659|Mus musculus domesticus DNA, BAC clone: B6Ng01-165K14, 5' end.DH957660|Mus musculus domesticus DNA, BAC clone: B6Ng01-165K14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,750,733 - 55,751,954)(55,611,021 - 55,612,022)
sequence
gaattcaagaacttgccaattcagaaaagcagactctgatatccttttca
atccttatatatctggcatgaagcatacttaagaacgtgctctctccagc
tctttcatatccctttccttactgatttaatttcctttacaatgtttatc
ttctctctttatgtgttcattcttctttgatctcttccagcatatttttg
actgtggttaaaaaatataaattggaaagcataaaaagaataaatgaatg
caccactaaaagtcagaaggaaatagtaaatacgatggtagccagagata
ctttgaaattaaatgcaaacagtggttcagaatacaagcagaagcaggtg
ggaagcagacattcttttgaaatcagaaccagagatagacaaaaggtcag
atgctctcatggacctaagacaacacatattactgtctccactgggcagt
gaagtaaataaaaaaatcctatgggacttaggtaggcaataaaagaacaa
taaataaatttgttactcaaactcaaaaatatcaagctttgtactataac
caacttttaaatttagtggtctcataatagcacttaaggctacacccagt
aacatttcaaaataaatcaatgttctaataattttaatacaatttatttg
catagttttattttacttttcagatatgtgacctcttgaaagctcaacaa
cttctctgaaactcagtttctccaaaagcaatagaacttttctatccatg
ttcacacaggttaaactcatatcatttgcagagaacagttacagagacta
taataaacactgacaacttctgtattgtttcctcagtattcacttaatga
gttgagaatgtgggtttattattaataaactggaagaatacataattgga
gcatgacttgagattattaattataatgtacacaagtttgtaaatgaccc
atgcttacagaaaagcagtttccttagcttctttgtggcctcagcttctc
caaaccaaaattaattagcaggaaacaatattgtgctagtgagaaaagct
ccagcaagtaaagtttttttttcaccagaacctttatttgattaccagat
tccctcaattgaagaaaaggagcttgtattcaacagcttccccttctgac
ctgccaacctgatactatacctcagatgcagcgtgtgggcacacacgagt
ataaacaaacactcgctcatc
gaattcttttctggtccagtctatttaatttctatttttttattgtttct
atttcaattttagcttttagacagtcttatttatttcctttacctgattg
attgtagtctcctgtatttctttaagtgggcagccttgtctaggccctga
ctttagtgggattgcttcatgtttctttcctttttgtttgatgttggcta
ctagtttgctgtgtattgcttttactatgattagaatcgggccttgaata
cgtgatctttccaagattttatcatgaaggggtgttggattttgtgaaat
gctttaagtgaatttttcagttcctttgtaaatatttctattatcttcaa
atgatttgtaataaggtcattttcttgtgcctcagatatgttatgataca
ccagggcttgctgtagtatgatagctgggttctggtaatgacatattgct
ctgtgtcttaatgattatgttcttgtgttggcatttagccatttggttgt
ccctgttgatggcaggcctccaagaatacaggcagagttgtaagctggaa
gcagaatatggggcactctctgggtacagtttgcaacttttgagcatgtt
ttatcggaactgattttccccaggcttagcaggcctttctgagttcaggt
agagcaatttgcaagaaaatggagcttatctgcagagcattccctagggt
gacatgcaaggacaatggattgtccatggtgacagcaggtgtctgggaat
gtaggcagggctatggctggaagatggagctcagagaacagggcttgttc
actgctactgagtatgcttcactgaaatctgtgcagactggatattgtga
agtaaggacaggaatatcacctggatttctgtggtgcctgcagtatctac
gaatataggtggagccatgacaaccaatttttaagtgccattgaggcaaa
gtctttgtatacagtctttggtatacatgggtgaagtaggtatttcactg
gtatacatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55750733_55751954
seq2: B6Ng01-165K14.b_45_1265 (reverse)

seq1  GATGAGCGAGT-ATTGTTTATAATTGGTGTGTGTGCGCACACGCTTGTGC  49
      |||||||||||  ||||||||| |    |||||||| |||||||   |||
seq2  GATGAGCGAGTGTTTGTTTATACT---CGTGTGTGCCCACACGC---TGC  44

seq1  ATACTTGAGTGTATAGGTATTCAGGTGTGCAAGTCAGA--GGGGAGCTGT  97
      ||   |||| ||||| ||| ||||||  ||| ||||||  ||| ||||||
seq2  AT--CTGAG-GTATA-GTA-TCAGGTTGGCAGGTCAGAAGGGGAAGCTGT  89

seq1  TGGAATAC-AGCT-CTTTTCTTCCATTGAGGG-ATCTGGTAATCAAACTC  144
      | |||||| |||| ||||||||| |||||||| ||||||||||||||   
seq2  T-GAATACAAGCTCCTTTTCTTCAATTGAGGGAATCTGGTAATCAAATAA  138

seq1  AGGTTCCTGTG--ACAAACACTTTACCTGCT-GAGC-TATCTCACTAGCA  190
      ||||||  |||  | ||| ||||||| |||| |||| | |||||||||||
seq2  AGGTTCTGGTGAAAAAAAAACTTTACTTGCTGGAGCTTTTCTCACTAGCA  188

seq1  CAATATGTTTCCCTGCTAATTAATTTTGGTTTGGAGAAGCTGAGG-CACA  239
      ||||||  || |||||||||||||||||||||||||||||||||| ||||
seq2  CAATATTGTTTCCTGCTAATTAATTTTGGTTTGGAGAAGCTGAGGCCACA  238

seq1  AAGAAGCTAAGGAAACTGCTTTTCTGTAAGCATGGGTCATTTACAAACTT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTAAGGAAACTGCTTTTCTGTAAGCATGGGTCATTTACAAACTT  288

seq1  GTGTACATTATAATTAATAATCTCAAGTCATGCTCCAATTATGTATTCTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACATTATAATTAATAATCTCAAGTCATGCTCCAATTATGTATTCTT  338

seq1  CCAGTTTATTAATAATAAAACCACATTCTCAACTCATTAAGTGAATACTG  389
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCAGTTTATTAATAATAAACCCACATTCTCAACTCATTAAGTGAATACTG  388

seq1  AGGAAACAATACAGAAGTTGTCAGTGTTTATTATAGTCTCTGTAACTGTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAATACAGAAGTTGTCAGTGTTTATTATAGTCTCTGTAACTGTT  438

seq1  CTCTGCAAATGATATGAGTTTAACCTGTGTGAACATGGATAGAAAAGTTC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAAATGATATGAGTTTAACCTGTGTGAACATGGATAGAAAAGTTC  488

seq1  TATTGCTTTTGGAGAAACTGAGTTTCAGAGAAGTTGTTGAGCTTTCAAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTTTGGAGAAACTGAGTTTCAGAGAAGTTGTTGAGCTTTCAAGA  538

seq1  GGTCACATATCTGAAAAGTAAAATAAAACTATGCAAATAAATTGTATTAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATATCTGAAAAGTAAAATAAAACTATGCAAATAAATTGTATTAA  588

seq1  AATTATTAGAACATTGATTTATTTTGAAATGTTACTGGGTGTAGCCTTAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAGAACATTGATTTATTTTGAAATGTTACTGGGTGTAGCCTTAA  638

seq1  GTGCTATTATGAGACCACTAAATTTAAAAGTTGGTTATAGTACAAAGCTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATTATGAGACCACTAAATTTAAAAGTTGGTTATAGTACAAAGCTT  688

seq1  GATATTTTTGAGTTTGAGTAACAAATTTATTTATTGTTCTTTTATTGCCT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTTGAGTTTGAGTAACAAATTTATTTATTGTTCTTTTATTGCCT  738

seq1  ACCTAAGTCCCATAGGATTTTTTTATTTACTTCACTGCCCAGTGGAGACA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGTCCCATAGGATTTTTTTATTTACTTCACTGCCCAGTGGAGACA  788

seq1  GTAATATGTGTTGTCTTAGGTCCATGAGAGCATCTGACCTTTTGTCTATC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGTGTTGTCTTAGGTCCATGAGAGCATCTGACCTTTTGTCTATC  838

seq1  TCTGGTTCTGATTTCAAAAGAATGTCTGCTTCCCACCTGCTTCTGCTTGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCTGATTTCAAAAGAATGTCTGCTTCCCACCTGCTTCTGCTTGT  888

seq1  ATTCTGAACCACTGTTTGCATTTAATTTCAAAGTATCTCTGGCTACCATC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAACCACTGTTTGCATTTAATTTCAAAGTATCTCTGGCTACCATC  938

seq1  GTATTTACTATTTCCTTCTGACTTTTAGTGGTGCATTCATTTATTCTTTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTACTATTTCCTTCTGACTTTTAGTGGTGCATTCATTTATTCTTTT  988

seq1  TATGCTTTCCAATTTATATTTTTTAACCACAGTCAAAAATATGCTGGAAG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTCCAATTTATATTTTTTAACCACAGTCAAAAATATGCTGGAAG  1038

seq1  AGATCAAAGAAGAATGAACACATAAAGAGAGAAGATAAACATTGTAAAGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAAGAAGAATGAACACATAAAGAGAGAAGATAAACATTGTAAAGG  1088

seq1  AAATTAAATCAGTAAGGAAAGGGATATGAAAGAGCTGGAGAGAGCACGTT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATCAGTAAGGAAAGGGATATGAAAGAGCTGGAGAGAGCACGTT  1138

seq1  CTTAAGTATGCTTCATGCCAGATATATAAGGATTGAAAAGGATATCAGAG  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTATGCTTCATGCCAGATATATAAGGATTGAAAAGGATATCAGAG  1188

seq1  TCTGCTTTTCTGAATTGGCAAGTTCTTGAATTC  1222
      |||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTCTGAATTGGCAAGTTCTTGAATTC  1221

seq1: chr5_55611021_55612022
seq2: B6Ng01-165K14.g_82_1077

seq1  TCCAGTCTATTTAATTTCTATTTTTTTATTGTTTCTATTTCAATTTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTATTTAATTTCTATTTTTTTATTGTTTCTATTTCAATTTTAGC  50

seq1  TTTTAGACAGTCTTATTTATTTCCTTTACCTGATTGATTGTAGTCTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGACAGTCTTATTTATTTCCTTTACCTGATTGATTGTAGTCTCCTG  100

seq1  TATTTCTTTAAGTGGGCAGCCTTGTCTAGGCCCTGACTTTAGTGGGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTAAGTGGGCAGCCTTGTCTAGGCCCTGACTTTAGTGGGATTG  150

seq1  CTTCATGTTTCTTTCCTTTTTGTTTGATGTTGGCTACTAGTTTGCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTTTCTTTCCTTTTTGTTTGATGTTGGCTACTAGTTTGCTGTGT  200

seq1  ATTGCTTTTACTATGATTAGAATCGGGCCTTGAATACGTGATCTTTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTTACTATGATTAGAATCGGGCCTTGAATACGTGATCTTTCCAA  250

seq1  GATTTTATCATGAAGGGGTGTTGGATTTTGTGAAATGCTTTAAGTGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATCATGAAGGGGTGTTGGATTTTGTGAAATGCTTTAAGTGAATT  300

seq1  TTTCAGTTCCTTTGTAAATATTTCTATTATCTTCAAATGATTTGTAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTCCTTTGTAAATATTTCTATTATCTTCAAATGATTTGTAATAA  350

seq1  GGTCATTTTCTTGTGCCTCAGATATGTTATGATACACCAGGGCTTGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTTCTTGTGCCTCAGATATGTTATGATACACCAGGGCTTGCTGT  400

seq1  AGTATGATAGCTGGGTTCTGGTAATGACATATTGCTCTGTGTCTTAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGATAGCTGGGTTCTGGTAATGACATATTGCTCTGTGTCTTAATGA  450

seq1  TTATGTTCTTGTGTTGGCATTTAGCCATTTGGTTGTCCCTGTTGATGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCTTGTGTTGGCATTTAGCCATTTGGTTGTCCCTGTTGATGGCA  500

seq1  GGCCTCCAAGAATACAGGCAGAGTTGTAAGCTGGAAGCAGAATATGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAAGAATACAGGCAGAGTTGTAAGCTGGAAGCAGAATATGGGGC  550

seq1  ACTCTCTGGGTACAGTTTGCAACTTTTGAGCATGTTTTATCGGAACTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTGGGTACAGTTTGCAACTTTTGAGCATGTTTTATCGGAACTGAT  600

seq1  TTTCCCCAGGCTTAGCAGGCCTTTCTGAGTTCAGGTAGAGCAATTTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAGGCTTAGCAGGCCTTTCTGAGTTCAGGTAGAGCAATTTGCAA  650

seq1  GAAAATGGAGCTTATCTGCAGAGCATTCCCTAGGGTGACATGCAAGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGAGCTTATCTGCAGAGCATTCCCTAGGGTGACATGCAAGGACA  700

seq1  ATGGATTGTCCATGGTGACAGCAGGTGTCTGGGAATGTAGGCAGGGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTGTCCATGGTGACAGCAGGTGTCTGGGAATGTAGGCAGGGCTAT  750

seq1  GGCTGGAAGATGGAGCTCAGAGAACAGGGCTTGTTCACTGCTACTGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAAGATGGAGCTCAGAGAACAGGGCTTGTTCACTGCTACTGAGTA  800

seq1  TGCTTCACTGAAATCTG-GCAGACTGGATATTGTGAAGTAAGGACAGGAA  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCTTCACTGAAATCTGTGCAGACTGGATATTGTGAAGTAAGGACAGGAA  850

seq1  TATCACCTGGATTTCTGTGGTGCCTGCAGGTATCTAGGAATATAGGTGGA  899
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  TATCACCTGGATTTCTGTGGTGCCTGCA-GTATCTACGAATATAGGTGGA  899

seq1  GCCATGACAACCAATTTTTTAGGTTGCCATTGAGGCAAAAGTCTTTTGTA  949
      ||||||||||||||||||| ||  |||||||||||| |||||| ||||||
seq2  GCCATGACAACCAATTTTTAAG--TGCCATTGAGGC-AAAGTC-TTTGTA  945

seq1  TACAAGTCTTTGGTATACATGGTGTATGTATGTATTTTCACTGGTATACA  999
      ||| ||||||||||||||||||   | ||| ||| |||||||||||||||
seq2  TAC-AGTCTTTGGTATACATGGGTGAAGTAGGTA-TTTCACTGGTATACA  993

seq1  TAG  1002
      |||
seq2  TAG  996