BAC Information

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BAC

Clone NameB6Ng01-165N20
Chromosome5 (Build37)
Map Location 87,428,931 - 87,430,015
singlet/doubletsinglet
Overlap geneUgt2b35
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767
Downstream geneUgt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165N20.bB6Ng01-165N20.g
ACCDH957806DH957807
length1,2001,087
definitionDH957806|Mus musculus domesticus DNA, BAC clone: B6Ng01-165N20, 5' end.DH957807|Mus musculus domesticus DNA, BAC clone: B6Ng01-165N20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacccgaggtataccaaatagctgagatacacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgtaaatcaaaacctccctgagat
tccaccttacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcttggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggtaatcagtctggtggttcctca
gaaaattggacatagtactactggaggattccgcaatacctctcctgggc
atatatccagaagatgtcccaacttaaaaagaacacatgctccactatgt
tcatagcagccttatttataatagccagaagcgggaaagaacccaggtgt
ccctcaacagaggaatagatacagaaaatgtggtacatttacacagtgga
gtactactcagctgttaaaaagatgaatttatgaaattcctaggcaaatg
gatggacctggagggtctcatcttgagtgaggtaacccaatcacaaaaga
actcacacaatatgtgatatccacactgataagtggatattagtccagaa
acttagaatacccaagatatatgatacaagttgcaaaacacatgaaactc
aagaagaacgaagaccaaagtgtggacactttggcccttcttagacttgg
gaacaaaacacccatggaaggagtcacagagacaaagttttggagctgag
acagaagaatggaccatctagagactgccacacccggggatccatcccat
aatcagcctccaaacgctgacaccattgcatacaccagcaagattttgat
gaagggaccctgatatagctgtcttttttgaggccataccagtgcctggc
aaacacagaagtggatgctcacagtcagctattggatgggaacacagggt
cccatcaaggagctagagaaagtacccaaagagctaaagggtctgcaacc
cttataggaggacacaatatgtactaaccagtaccccccggtggctcggt
gtctctagcttgcatatgtttcagaagaaatggcctagtttggccatcat
tgggaagagagtgaaccttgatcttggcaaacttatatgcctcatgacta
ggggaatggctcaggttcaagatgtggagttggtgggtagtggcgaatat

gaattccagtggccacactaacaccttcccacagctggtggatctgaagc
agcaactcatctgcagcaggagcagagcagaaatccacttcacaggcatc
ctggaagtcaaagggcttctgttaactgtgtgttcccttgctttactgcc
tgtcctcttatctaagaagaagaaaaaaaaatccacgagttaaaatataa
cctgagttggtgcaagcaaacttaatgaccagattgaagttggtggctga
agagagatagtaaaagcaaatattaattatttcagatttatttggaagtg
tttaaaatcacgttttgtaaagaagtaaagttaggagttgtgacctgtgt
aaacctgtttacaggagttttgaatcatagaaagaacactgattagtgta
aggtgagtctgcattttattctcaacctgtgaaatccagatgtactagtt
accgaacttatcagtatatcatggatattattttgtaagaatgtcggata
aaatattaagtcacatagagtttgctgaatagcctgacagtgtgccttag
ttacttgacagagaaaagatctgtgaataaaatagacaagagtttctatg
aatgtccctaaggaaaaagccaaacacactgccctgagtggtattagctg
ctaaggtttacagagagcactcagttgattcaacctatctgtccacagcc
ctttcctaggaccaagaagtagctggatagtttgatcttgctttagttag
agtttttgttgttgttattgttgttgttgtgaagagacaccatggccaaa
ggcaacccttataaaaggatgacgttcatttggtctaccttccactttca
gaagtttagtccgttatccacatggcaggaagcgtggcagagtccaggca
gacacaatgttgtagaagggattgagagttctacatcttgattggaaggc
agctaggagactgtttccacattgtgcagaaatgagcacaaaatcttgaa
gcccacgaaataccgttgacacactcttctatggaggccccggcctactc
taacaaagaaaaataccttaatattgctcacacttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87428931_87430015
seq2: B6Ng01-165N20.g_69_1155 (reverse)

seq1  ACAAGGTGTG-GCAATATTAAGAGATATTTTCTTGTTAGAGTAGG-CGTG  48
      |||| ||||| |||||||||||  || |||  ||||||||||||| || |
seq2  ACAA-GTGTGAGCAATATTAAGGTATTTTTCTTTGTTAGAGTAGGCCGGG  49

seq1  GCCTCATTAGAAGAAGTGTGTC-ACTGTAATTCGTGGGCTTCAAGATTTT  97
      |||||  |||||| |||||||| || ||| ||||||||||||||||||||
seq2  GCCTCCATAGAAG-AGTGTGTCAACGGTATTTCGTGGGCTTCAAGATTTT  98

seq1  GTGCTCAATTTCTGCACAATGTGGAAACAGTCTCCTAGCTGCCTTCCAAT  147
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTC-ATTTCTGCACAATGTGGAAACAGTCTCCTAGCTGCCTTCCAAT  147

seq1  CAAGATGTAGAACTCTCAATCCCTTCTACAACATTGTGTCTGCCTGGACT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTAGAACTCTCAATCCCTTCTACAACATTGTGTCTGCCTGGACT  197

seq1  CTGCCACGCTTCCTGCCATGTGGATAACGGACTAAACTTCTGAAAGTGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACGCTTCCTGCCATGTGGATAACGGACTAAACTTCTGAAAGTGGA  247

seq1  AGGTAGACCAAATGAACGTCATCC-TTTATAAGGGTTGCC-TTGGCCATG  295
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  AGGTAGACCAAATGAACGTCATCCTTTTATAAGGGTTGCCTTTGGCCATG  297

seq1  GTGTCTCTTCACAACAACAACAATAACAACAACAAAAACTCTAACTAAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTTCACAACAACAACAATAACAACAACAAAAACTCTAACTAAAG  347

seq1  CAAGATCAAACTATCCAGCTACTTCTTGGTCCTAGGAAAGGGCTGTGGAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCAAACTATCCAGCTACTTCTTGGTCCTAGGAAAGGGCTGTGGAC  397

seq1  AGATAGGTTGAATCAACTGAGTGCTCTCTGTAAACCTTAGCAGCTAATAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGTTGAATCAACTGAGTGCTCTCTGTAAACCTTAGCAGCTAATAC  447

seq1  CACTCAGGGCAGTGTGTTTGGCTTTTTCCTTAGGGACATTCATAGAAACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGGCAGTGTGTTTGGCTTTTTCCTTAGGGACATTCATAGAAACT  497

seq1  CTTGTCTATTTTATTCACAGATCTTTTCTCTGTCAAGTAACTAAGGCACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTATTTTATTCACAGATCTTTTCTCTGTCAAGTAACTAAGGCACA  547

seq1  CTGTCAGGCTATTCAGCAAACTCTATGTGACTTAATATTTTATCCGACAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGCTATTCAGCAAACTCTATGTGACTTAATATTTTATCCGACAT  597

seq1  TCTTACAAAATAATATCCATGATATACTGATAAGTTCGGTAACTAGTACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAAAATAATATCCATGATATACTGATAAGTTCGGTAACTAGTACA  647

seq1  TCTGGATTTCACAGGTTGAGAATAAAATGCAGACTCACCTTACACTAATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTTCACAGGTTGAGAATAAAATGCAGACTCACCTTACACTAATC  697

seq1  AGTGTTCTTTCTATGATTCAAAACTCCTGTAAACAGGTTTACACAGGTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTTTCTATGATTCAAAACTCCTGTAAACAGGTTTACACAGGTCA  747

seq1  CAACTCCTAACTTTACTTCTTTACAAAACGTGATTTTAAACACTTCCAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTAACTTTACTTCTTTACAAAACGTGATTTTAAACACTTCCAAA  797

seq1  TAAATCTGAAATAATTAATATTTGCTTTTACTATCTCTCTTCAGCCACCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGAAATAATTAATATTTGCTTTTACTATCTCTCTTCAGCCACCA  847

seq1  ACTTCAATCTGGTCATTAAGTTTGCTTGCACCAACTCAGGTTATATTTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATCTGGTCATTAAGTTTGCTTGCACCAACTCAGGTTATATTTTA  897

seq1  ACTCGTGGATTTTTTTTTCTTCTTCTTAGATAAGAGGACAGGCAGTAAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGTGGATTTTTTTTTCTTCTTCTTAGATAAGAGGACAGGCAGTAAAG  947

seq1  CAAGGGAACACACAGTTAACAGAAGCCCTTTGACTTCCAGGATGCCTGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAACACACAGTTAACAGAAGCCCTTTGACTTCCAGGATGCCTGTG  997

seq1  AAGTGGATTTCTGCTCTGCTCCTGCTGCAGATGAGTTGCTGCTTCAGATC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATTTCTGCTCTGCTCCTGCTGCAGATGAGTTGCTGCTTCAGATC  1047

seq1  CACCAGCTGTGGGAAGGTGTTAGTGTGGCCACTGGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTGTGGGAAGGTGTTAGTGTGGCCACTGGAATTC  1087