BAC Information

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BAC

Clone NameB6Ng01-166I20
Chromosome5 (Build37)
Map Location 85,092,222 - 85,242,539
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166I20.bB6Ng01-166I20.g
ACCDH958302DH958303
length1,1211,093
definitionDH958302|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I20, 5' end.DH958303|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,092,222 - 85,093,360)(85,241,437 - 85,242,539)
sequence
gaattcatattgtcttagttagggttttactgctgtgaacagacaccatg
accaaggcaagtcttataaaaacaacattaaattgaggctggcttacagg
ttcagaggttcagtccattatcatcaaggtgggaacatggcagcatccag
gcaggcatggcacaggcagagctgagagttctacctcttcatccaaaggc
tgctagtggaagactgacttccaggcaactagggtgagggtcttaagccc
atacccacagtgtcacacctccaaatggtgccactccctggtccaagaat
atacaaaccatcacacatatttttaaaatttcacataatgtatataaact
ttaaattatttgtttttttctttttttttattagaatcaaattaagtatg
cataacaacttgtgtatcaaatccattacattttttggtagattatattt
tctttttcatttttcctactgcttattggatagtttagtgatatgttatt
taccaatactggattaattgttaagtgtaataaaggttgtgttcaaatat
ttcatgaagcttttgaataatagaacctctggtccttctttttaagagtt
tttttcaggttttatgattgtatatttgtgatattttttaaaagtgtaat
ttatttgaaaatttcatacctgtaaataatttatttagatcctgtttcca
ccattcctctactcctcctcctccttcatctttccatctttttgaaaact
tcatatattcttaattattcatttcataactcgcccctactggctagttt
tgtgtcaacttgacacaggctggagttatcacagagaaaggagcttcagc
tgaggaaatgcctccatgagatccaacggtaaggcatattctccattagt
gatcaagagggaaggccccttgtgggtgggaccattcctgggatggtagc
cttgggttctatagagagcagctagcaagcccggggaagcaaaccagtaa
gaaacatccctccatggcctctacatcagctcctgcttttgacctgctga
gttctaatcctgacttcttttagtgatgaacgcattgaatgtaagctgaa
tacctttttcccactgcttct
gaattccttaaagttattttcacttttattattattagtgtcatttttaa
ttagaggatttaatattctaatcagactgtaaatatttaacccaataatc
attctcattaggtttatacacattttatatgaattaaaatatgtacagat
gatttctacaagtgtattattttagaatttgagactattgttgaacattc
acacttaaagattatttttcaaactatctttctcatatttaagttatcat
ttatactttgaaggtattgatacacaagcatttgtgcactcaggaataca
tagccaggttaattaaactgcattttaaatgaatacacaaggggctacca
tgatataagagaacttaccaggcacataaaagtttcttttgccttaattt
ttttgagattataaaataaatagatttcttccttttcccctccctgcaaa
ctcactcatataccccttccaattcttcttcaaattcacgacacattttt
ttcactatttgttacagtaaaattatatgtatatttgtatacatatttat
tccaaaaggaaatctattcagtcagtattatgttctatctatatatgttt
tcagtgctgttttttttttttgtctcagacaacaaagtcatgtgcttttc
cctgggaaatgttacctcctctagtcccagtggtcctcagttgcctgtat
ctctttgtagacagtagacttgattgtcatagctttggatattattagga
gacccagaggatcagggaatttgctttgactttgtaacttattttttttt
aagaatagaaattattttattttccttgaaatatatatatatatatatat
atatatatatatatatatatatgttctagtgctcaatatagaatcatgaa
tagcaccttttactcatcaaaatatccaaaaaaccacattgacttgccta
attatattaagtagtacatccaatgctattttttgttaacctgtttaaat
acagctttggttcagtattcacaaagatgtctttttgcttatttggtcat
gatctatattctttcctcttcagaattactaaaagggtatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85092222_85093360
seq2: B6Ng01-166I20.b_42_1162

seq1  GAATTCATATTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCATG  50

seq1  ACCAAGGCAAGTCTTATAAAAACAACATTAAATTGAGGCTGGCTTACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCAAGTCTTATAAAAACAACATTAAATTGAGGCTGGCTTACAGG  100

seq1  TTCAGAGGTTCAGTCCATTATCATCAAGGTGGGAACATGGCAGCATCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGTTCAGTCCATTATCATCAAGGTGGGAACATGGCAGCATCCAG  150

seq1  GCAGGCATGGCACAGGCAGAGCTGAGAGTTCTACCTCTTCATCCAAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATGGCACAGGCAGAGCTGAGAGTTCTACCTCTTCATCCAAAGGC  200

seq1  TGCTAGTGGAAGACTGACTTCCAGGCAACTAGGGTGAGGGTCTTAAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGGAAGACTGACTTCCAGGCAACTAGGGTGAGGGTCTTAAGCCC  250

seq1  ATACCCACAGTGTCACACCTCCAAATGGTGCCACTCCCTGGTCCAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACAGTGTCACACCTCCAAATGGTGCCACTCCCTGGTCCAAGAAT  300

seq1  ATACAAACCATCACACATATTTTTAAAATTTCACATAATGTATATAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACCATCACACATATTTTTAAAATTTCACATAATGTATATAAACT  350

seq1  TTAAATTATTTGTTTTTTTCTTTTTTTTTATTAGAATCAAATTAAGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATTTGTTTTTTTCTTTTTTTTTATTAGAATCAAATTAAGTATG  400

seq1  CATAACAACTTGTGTATCAAATCCATTACATTTTTTGGTAGATTATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAACTTGTGTATCAAATCCATTACATTTTTTGGTAGATTATATTT  450

seq1  TCTTTTTCATTTTTCCTACTGCTTATTGGATAGTTTAGTGATATGTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCATTTTTCCTACTGCTTATTGGATAGTTTAGTGATATGTTATT  500

seq1  TACCAATACTGGATTAATTGTTAAGTGTAATAAAGGTTGTGTTCAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATACTGGATTAATTGTTAAGTGTAATAAAGGTTGTGTTCAAATAT  550

seq1  TTCATGAAGCTTTTGAATAATAGAACCTCTGGTCCTTCTTTTTAAGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAGCTTTTGAATAATAGAACCTCTGGTCCTTCTTTTTAAGAGTT  600

seq1  TTTTTCAGGTTTTATGATTGTATATTTGTGATATTTTTTAAAAGTGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGGTTTTATGATTGTATATTTGTGATATTTTTTAAAAGTGTAAT  650

seq1  TTATTTGAAAATTTCATACCTGTAAATAATTTATTTAGATCCTGTTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAAAATTTCATACCTGTAAATAATTTATTTAGATCCTGTTTCCA  700

seq1  CCATTCCTCTACTCCTCCTCCTCCTTCATCTTTCCATCTTTTTGAAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTCTACTCCTCCTCCTCCTTCATCTTTCCATCTTTTTGAAAACT  750

seq1  TCATATATTCTTAATTATTCATTTCATAACTCGCCCCTACTGGCTAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTCTTAATTATTCATTTCATAACTCGCCCCTACTGGCTAGTTT  800

seq1  TGTGTCAACTTGACACAGGCTGGAGTTATCACAGAGAAAGGAGCTTCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAACTTGACACAGGCTGGAGTTATCACAGAGAAAGGAGCTTCAGC  850

seq1  TGAGGAAATGCCTCCATGAGATCCAACGGTAAGGCATATTCTCCATTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAATGCCTCCATGAGATCCAACGGTAAGGCATATTCTCCATTAGT  900

seq1  GATCAAGAGGGAAGGGCCCCTTGTGGGTGGGACCATTCCTGGGATGGTAG  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATCAAGAGGGAA-GGCCCCTTGTGGGTGGGACCATTCCTGGGATGGTAG  949

seq1  CCTTGGGTTCTATAAGAGAGCAGGCTAAGCAAGCCCGGGGAAGCAAACCA  1000
      ||||||||||||| |||||||| ||| |||||||||||||||||||||||
seq2  CCTTGGGTTCTAT-AGAGAGCA-GCT-AGCAAGCCCGGGGAAGCAAACCA  996

seq1  GTAAGAAACATCCCTCCATGGCCTCTACATCAGCTCCTGCTTTTTGACCT  1050
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTAAGAAACATCCCTCCATGGCCTCTACATCAGCTCCTGC-TTTTGACCT  1045

seq1  GCTTGAGTTCTAATCCTGACTTCTTTTAGTGATGAACAGCAATTTGGAAA  1100
      || |||||||||||||||||||||||||||||||||| |||  |||  ||
seq2  GC-TGAGTTCTAATCCTGACTTCTTTTAGTGATGAAC-GCA--TTG--AA  1089

seq1  TGTAAGCTGAATAAACCCTTTTCTCCCCAACTTGCTTCT  1139
      |||||||||||||   |||||| ||||  || |||||||
seq2  TGTAAGCTGAATA---CCTTTT-TCCC--AC-TGCTTCT  1121

seq1: chr5_85241437_85242539
seq2: B6Ng01-166I20.g_68_1160 (reverse)

seq1  AAAAAACCCTTTTAGTAATACTGAAGAGGGAAGAATCTAGATCATGACCA  50
      |||| |||||||||||||| ||||||||| |||||| |||||||||||||
seq2  AAAATACCCTTTTAGTAATTCTGAAGAGGAAAGAATATAGATCATGACCA  50

seq1  AATAGGCAAAAAGACATCTTTGTGAATACTGGAAACAAAGCTGTATTTAA  100
      |||| ||||||||||||||||||||||||| ||| ||||||||||||| |
seq2  AATAAGCAAAAAGACATCTTTGTGAATACT-GAACCAAAGCTGTATTT-A  98

seq1  AACAGGTATAAACAAAAATAGCATTGGATGTACTACTTAATATAATTAGG  150
      ||||||| |||  |||||||||||||||||||||||||||||||||||||
seq2  AACAGGT-TAACAAAAAATAGCATTGGATGTACTACTTAATATAATTAGG  147

seq1  CAAGGTCAATGTGGTTTTTTTGGATATTTTGATGAGTAAAAGGTGCTATT  200
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAA-GTCAATGTGG-TTTTTTGGATATTTTGATGAGTAAAAGGTGCTATT  195

seq1  CATGATTCTATATTGAGCAATAGAAACATATATATATATATATATATATA  250
      ||||||||||||||||||| ||||     | |||||||||||||||||||
seq2  CATGATTCTATATTGAGCACTAGA-----ACATATATATATATATATATA  240

seq1  TATATATATATATATATATATATTTCAAGGAAAATAAAATAATTTCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATTTCAAGGAAAATAAAATAATTTCTATT  290

seq1  CTTAAAAAAAAATAAGTTACAAAGTCAAAGCAAATTCCCTGATCCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAAATAAGTTACAAAGTCAAAGCAAATTCCCTGATCCTCTGG  340

seq1  GTCTCCTAATAATATCCAAAGCTATGACAATCAAGTCTACTGTCTACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTAATAATATCCAAAGCTATGACAATCAAGTCTACTGTCTACAAA  390

seq1  GAGATACAGGCAACTGAGGACCACTGGGACTAGAGGAGGTAACATTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACAGGCAACTGAGGACCACTGGGACTAGAGGAGGTAACATTTCCC  440

seq1  AGGGAAAAGCACATGACTTTGTTGTCTGAGACAAAAAAAAAAAACAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAGCACATGACTTTGTTGTCTGAGACAAAAAAAAAAAACAGCAC  490

seq1  TGAAAACATATATAGATAGAACATAATACTGACTGAATAGATTTCCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACATATATAGATAGAACATAATACTGACTGAATAGATTTCCTTTT  540

seq1  GGAATAAATATGTATACAAATATACATATAATTTTACTGTAACAAATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAATATGTATACAAATATACATATAATTTTACTGTAACAAATAGT  590

seq1  GAAAAAAATGTGTCGTGAATTTGAAGAAGAATTGGAAGGGGTATATGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATGTGTCGTGAATTTGAAGAAGAATTGGAAGGGGTATATGAGT  640

seq1  GAGTTTGCAGGGAGGGGAAAAGGAAGAAATCTATTTATTTTATAATCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCAGGGAGGGGAAAAGGAAGAAATCTATTTATTTTATAATCTCA  690

seq1  AAAAAATTAAGGCAAAAGAAACTTTTATGTGCCTGGTAAGTTCTCTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAGGCAAAAGAAACTTTTATGTGCCTGGTAAGTTCTCTTATA  740

seq1  TCATGGTAGCCCCTTGTGTATTCATTTAAAATGCAGTTTAATTAACCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTAGCCCCTTGTGTATTCATTTAAAATGCAGTTTAATTAACCTGG  790

seq1  CTATGTATTCCTGAGTGCACAAATGCTTGTGTATCAATACCTTCAAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATTCCTGAGTGCACAAATGCTTGTGTATCAATACCTTCAAAGTA  840

seq1  TAAATGATAACTTAAATATGAGAAAGATAGTTTGAAAAATAATCTTTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATAACTTAAATATGAGAAAGATAGTTTGAAAAATAATCTTTAAG  890

seq1  TGTGAATGTTCAACAATAGTCTCAAATTCTAAAATAATACACTTGTAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGTTCAACAATAGTCTCAAATTCTAAAATAATACACTTGTAGAA  940

seq1  ATCATCTGTACATATTTTAATTCATATAAAATGTGTATAAACCTAATGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGTACATATTTTAATTCATATAAAATGTGTATAAACCTAATGAG  990

seq1  AATGATTATTGGGTTAAATATTTACAGTCTGATTAGAATATTAAATCCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTATTGGGTTAAATATTTACAGTCTGATTAGAATATTAAATCCTC  1040

seq1  TAATTAAAAATGACACTAATAATAATAAAAGTGAAAATATCTTTAAGGAA  1100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAATTAAAAATGACACTAATAATAATAAAAGTGAAAATAACTTTAAGGAA  1090

seq1  TTC  1103
      |||
seq2  TTC  1093