BAC Information

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BAC

Clone NameB6Ng01-167B07
Chromosome5 (Build37)1 (Build37)
Map Location 18,084,511 - 18,084,57568,728,613 - 68,729,714
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167B07.bB6Ng01-167B07.g
ACCDH958674DH958675
length8711,102
definitionDH958674|Mus musculus domesticus DNA, BAC clone: B6Ng01-167B07, 5' end.DH958675|Mus musculus domesticus DNA, BAC clone: B6Ng01-167B07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,575)(68,728,613 - 68,729,714)
sequence
gaattctcacctgaggaataccgaacggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacatc
agatgctggcgaggatgtggagaaagaggaacactcctccatttttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaactgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccaggatccaccccataatca
gcatccaaacgctgacaccattgcatacactagcagattttatcgaaagg
acccagatgtagctgtctctt
gaattctttttctggcacgatgtttaactcaaattgagggaaaattacct
aacgttccttggagaccaattgcttccaaccagactacttattaaataat
tccagttcagacccacaattgtaacaggcaccttcgtcatcccttccctg
agaacaagcacatttttatttcaactgatcattaaattctgtaaattgat
tctgtctctgtgaagttgggtaatagttcttagaaagtgactacaggcta
acttcactgatgagcaatgagagcctttgctcattttgaccttgacatcc
caaagggatcttaatgaaatataatctatttaagttgttatagatgtttt
cacagtttccacaacctctctttctcacatcttgccaaatagttctaatt
gctgttcaagcacacatttgacactgatttagggtgttatgtagaaacat
agataataatctcttcttgaaaagtaatgcaaatctgaatgctagatatt
tataaatatgtttgactcacattgcatatgatacatattaggtaacatta
atgttgattataaaaatatctggaattaaaatattgccttcatttatggt
gttcaaacaaagaaattgactttccattgaaagataattttgtatgattt
gccctaatattgccaactatttagatactccaagtataatttcattactc
aaaaagggaatattccctcagtaaatgtacacacacacaccacacattaa
ggagctactacgtgtaatgtaatttctaataaaagctgttttcacataac
cttgcatgtatgtgtttgtatctaagtgttggtgaggatcatcattacta
tgtcttttcagaagaatgagattagtaatattatgtacacggtctaggaa
agtatctcctagcatgtcactgggagggaagcaatcttacatgcatatgc
taaatacacagatgaagtatgtcatttaaacaggacataaagagttcata
ttaacatattagagatgtgtatccaatttcaagtggtaaacttattaaca
atgaagaaaaattaaaatccatttctgccaaacatccattaacatgagca
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084575
seq2: B6Ng01-167B07.b_360_424 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      |||||||||||||||
seq2  CTTCTTACCAGTTGG  65

seq1: chr1_68728613_68729714
seq2: B6Ng01-167B07.g_65_1166 (reverse)

seq1  TATGCTCATTGTTAATGGATGGTTTGGCAG-AATGGATTTTAATTTTTCT  49
      |||||||| ||||||||||| ||||||||| |||||||||||||||||||
seq2  TATGCTCA-TGTTAATGGAT-GTTTGGCAGAAATGGATTTTAATTTTTCT  48

seq1  TCATTGTTAAT-AGTTTACCACTTGAAATTGGATACACATCTCTAATATG  98
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTAATAAGTTTACCACTTGAAATTGGATACACATCTCTAATATG  98

seq1  TTAATATGAACTCTTTATGTCCTGTTTAAATGACATACTTCATCTGTGTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGAACTCTTTATGTCCTGTTTAAATGACATACTTCATCTGTGTA  148

seq1  TTTAGCATATGCATGTAAGATTGCTTCCCTCCCAGTGACATGCTAGGAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATATGCATGTAAGATTGCTTCCCTCCCAGTGACATGCTAGGAGA  198

seq1  TACTTTCCTAGACCGTGTACATAATATTACTAATCTCATTCTTCTGAAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCTAGACCGTGTACATAATATTACTAATCTCATTCTTCTGAAAA  248

seq1  GACATAGTAATGATGATCCTCACCAACACTTAGATACAAACACATACATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGTAATGATGATCCTCACCAACACTTAGATACAAACACATACATG  298

seq1  CAAGGTTATGTGAAAACAGCTTTTATTAGAAATTACATTACACGTAGTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTATGTGAAAACAGCTTTTATTAGAAATTACATTACACGTAGTAG  348

seq1  CTCCTTAATGTGTGGTGTGTGTGTGTACATTTACTGAGGGAATATTCCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAATGTGTGGTGTGTGTGTGTACATTTACTGAGGGAATATTCCCT  398

seq1  TTTTGAGTAATGAAATTATACTTGGAGTATCTAAATAGTTGGCAATATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTAATGAAATTATACTTGGAGTATCTAAATAGTTGGCAATATTA  448

seq1  GGGCAAATCATACAAAATTATCTTTCAATGGAAAGTCAATTTCTTTGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAATCATACAAAATTATCTTTCAATGGAAAGTCAATTTCTTTGTTT  498

seq1  GAACACCATAAATGAAGGCAATATTTTAATTCCAGATATTTTTATAATCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCATAAATGAAGGCAATATTTTAATTCCAGATATTTTTATAATCA  548

seq1  ACATTAATGTTACCTAATATGTATCATATGCAATGTGAGTCAAACATATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATGTTACCTAATATGTATCATATGCAATGTGAGTCAAACATATT  598

seq1  TATAAATATCTAGCATTCAGATTTGCATTACTTTTCAAGAAGAGATTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATCTAGCATTCAGATTTGCATTACTTTTCAAGAAGAGATTATT  648

seq1  ATCTATGTTTCTACATAACACCCTAAATCAGTGTCAAATGTGTGCTTGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTTTCTACATAACACCCTAAATCAGTGTCAAATGTGTGCTTGAA  698

seq1  CAGCAATTAGAACTATTTGGCAAGATGTGAGAAAGAGAGGTTGTGGAAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTAGAACTATTTGGCAAGATGTGAGAAAGAGAGGTTGTGGAAAC  748

seq1  TGTGAAAACATCTATAACAACTTAAATAGATTATATTTCATTAAGATCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAACATCTATAACAACTTAAATAGATTATATTTCATTAAGATCCC  798

seq1  TTTGGGATGTCAAGGTCAAAATGAGCAAAGGCTCTCATTGCTCATCAGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGATGTCAAGGTCAAAATGAGCAAAGGCTCTCATTGCTCATCAGTG  848

seq1  AAGTTAGCCTGTAGTCACTTTCTAAGAACTATTACCCAACTTCACAGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGCCTGTAGTCACTTTCTAAGAACTATTACCCAACTTCACAGAGA  898

seq1  CAGAATCAATTTACAGAATTTAATGATCAGTTGAAATAAAAATGTGCTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAATTTACAGAATTTAATGATCAGTTGAAATAAAAATGTGCTTG  948

seq1  TTCTCAGGGAAGGGATGACGAAGGTGCCTGTTACAATTGTGGGTCTGAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGGAAGGGATGACGAAGGTGCCTGTTACAATTGTGGGTCTGAAC  998

seq1  TGGAATTATTTAATAAGTAGTCTGGTTGGAAGCAATTGGTCTCCAAGGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTATTTAATAAGTAGTCTGGTTGGAAGCAATTGGTCTCCAAGGAA  1048

seq1  CGTTAGGTAATTTTCCCTCAATTTGAGTTAAACATCGTGCCAGAAAAAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGGTAATTTTCCCTCAATTTGAGTTAAACATCGTGCCAGAAAAAGA  1098

seq1  ATTC  1102
      ||||
seq2  ATTC  1102