BAC Information

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BAC

Clone NameB6Ng01-167K19
Chromosome5 (Build37)
Map Location 124,798,247 - 124,969,582
singlet/doubletdoublet
Overlap geneCdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik
Upstream geneBcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik
Downstream geneRpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167K19.bB6Ng01-167K19.g
ACCDH959105DH959106
length1,1131,026
definitionDH959105|Mus musculus domesticus DNA, BAC clone: B6Ng01-167K19, 5' end.DH959106|Mus musculus domesticus DNA, BAC clone: B6Ng01-167K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,798,247 - 124,799,361)(124,968,547 - 124,969,582)
sequence
gaattccactaagccaggggagtctctctggtgagggtcaggaaggagga
gggctctctatcattcccttctcagaaacccatgagccgcatcccccacc
ataaacacctactgaatctagagttgccctagcaactgcaatagcacaca
ttccaaaagtaccaagccatggatcgagtgctctttccctgaccaactag
tgcttcccctaggaaaccccttagcctttactgcctgggcccaaggcatc
ctcctacctcagcctcccaaatacctaggagcacaggtattttacctgga
tgcttggcttcagaaagccgttcaccagtgataggcagcattcagtcccc
taaccacgcttacctcgttttagcctctccatggcgctcttgctccctgc
atacgtcggtctgatctctttccccaactcttcaatgatggccagcagct
ctgcatatttactctgaggcacctggctatttccagttccctatgatcag
aagacaagggttaggatagactgacccaccacagtagccacccataggta
gaaagtgacctagacttaggctccatccggggctgtcctagctgaagcat
agccctcccatagataactccagagtagggtaaaaggtcctcatgccagg
ctccatccagaaaaacaactttatcatccacacagggaaaatgatctgac
tgtcaaagtgacaagtcacaggaagcacctagatccacgagacaaagagg
gtgcttcctgggagtgcacaatgagtgtagatgaagtcacccctggagga
actcaacagtcactgaggacccaggatgagcctagaacttgatcaaaatc
gccaaatcctccccacagcctttatctccaggctacggcccaagcaatca
cccagatcattgagggccctggctccagcctctcctcctcctgccgcagc
tggaccatggtggccagctccctgtccagggctttggactgctcctctcg
cctctgctgcctccactcccaagcctcgcacaaggcttaaaggcaagtct
tggagcctcagcctctggccatccgcctcctggcccctcgctctcccaag
gcccgggcgcctc
gaattctctttgaggtgttctttgttgagatggatttgatggctttagaa
agcaacgtattaatggtgctatgtgacttaacagactcacaagatctttg
tgtgcctcggttgcccagtttgaatgggagaaaagtgtagtggtccctct
cccatcagggtgtctggcatcttacttttatgctttctaggtctgactgt
attctaatggatgttggcgatttctcagtttcttttcactgctgtgtcct
attctatgcacggatggaccgtgtctgttgttcacccatagttggggctt
tctggttgtatccatgttttggctgctgggaacatcttttcagtgtttgt
ggggaggcctggtttcagctctgtggggtccatgtctaggattggaattg
tggaatcactttatttaggaaaaatcttgatgtagcctatggggcctctt
ggggtgatctgggaagtccactgcccactctagctctgagctacctttcc
tgaggttcccttccctctgggaatgtggctttgcccttgcagctctcgaa
cccctgtggaccagcataaggtgtatgcaggagatgcacttaatgctgag
tgtgctcagcttccgtgggaccagctggagagctgcgttctccacgctgc
ggcccccgccggagccgagagccgggcagatgccaggctgccttcagggt
tatttttattttgtggggaaaccatgggaacacagcagggaccaagtgtt
ccccacctactagaggaacaggcatggggcaggcagtaccctgggagaaa
gagggttggcgctggtgactttcagaccagtcaagagtgaatggtacagg
gctagggtcaagggtcatatgaaggctcagggtcagatttctgtggaggt
gagctaggggaaggagggttgttcaaaatacccaccctacatgggcaact
aagatttctgattctgaaagggtgtattccgtctcttctgttctaccaag
aggccttcaaattaaatcccctctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_124798247_124799361
seq2: B6Ng01-167K19.b_46_1158

seq1  GAATTCCACTAAGCCAGGGGAGTCTCTCTGGTGAGGGTCAGGAAGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTAAGCCAGGGGAGTCTCTCTGGTGAGGGTCAGGAAGGAGGA  50

seq1  GGGCTCTCTATCATTCCCTTCTCAGAAACCCATGAGCCGCATCCCCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTCTATCATTCCCTTCTCAGAAACCCATGAGCCGCATCCCCCACC  100

seq1  ATAAACACCTACTGAATCTAGAGTTGCCCTAGCAACTGCAATAGCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACCTACTGAATCTAGAGTTGCCCTAGCAACTGCAATAGCACACA  150

seq1  TTCCAAAAGTACCAAGCCATGGATCGAGTGCTCTTTCCCTGACCAACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAGTACCAAGCCATGGATCGAGTGCTCTTTCCCTGACCAACTAG  200

seq1  TGCTTCCCCTAGGAAACCCCTTAGCCTTTACTGCCTGGGCCCAAGGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCCCTAGGAAACCCCTTAGCCTTTACTGCCTGGGCCCAAGGCATC  250

seq1  CTCCTACCTCAGCCTCCCAAATACCTAGGAGCACAGGTATTTTACCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACCTCAGCCTCCCAAATACCTAGGAGCACAGGTATTTTACCTGGA  300

seq1  TGCTTGGCTTCAGAAAGCCGTTCACCAGTGATAGGCAGCATTCAGTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCTTCAGAAAGCCGTTCACCAGTGATAGGCAGCATTCAGTCCCC  350

seq1  TAACCACGCTTACCTCGTTTTAGCCTCTCCATGGCGCTCTTGCTCCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACGCTTACCTCGTTTTAGCCTCTCCATGGCGCTCTTGCTCCCTGC  400

seq1  ATACGTCGGTCTGATCTCTTTCCCCAACTCTTCAATGATGGCCAGCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTCGGTCTGATCTCTTTCCCCAACTCTTCAATGATGGCCAGCAGCT  450

seq1  CTGCATATTTACTCTGAGGCACCTGGCTATTTCCAGTTCCCTATGATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATTTACTCTGAGGCACCTGGCTATTTCCAGTTCCCTATGATCAG  500

seq1  AAGACAAGGGTTAGGATAGACTGACCCACCACAGTAGCCACCCATAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGGGTTAGGATAGACTGACCCACCACAGTAGCCACCCATAGGTA  550

seq1  GAAAGTGACCTAGACTTAGGCTCCATCCGGGGCTGTCCTAGCTGAAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGACCTAGACTTAGGCTCCATCCGGGGCTGTCCTAGCTGAAGCAT  600

seq1  AGCCCTCCCATAGATAACTCCAGAGTAGGGTAAAAGGTCCTCATGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCCCATAGATAACTCCAGAGTAGGGTAAAAGGTCCTCATGCCAGG  650

seq1  CTCCATCCAGAAAAACAACTTTATCATCCACACAGGGAAAATGATCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCAGAAAAACAACTTTATCATCCACACAGGGAAAATGATCTGAC  700

seq1  TGTCAAAGTGACAAGTCACAGGAAGCACCTAGATCCACGAGACAAAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGTGACAAGTCACAGGAAGCACCTAGATCCACGAGACAAAGAGG  750

seq1  GTGCTTCCTGGGAGTGCACAATGAGTGTAGATGAAGTCACCCCTGGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCTGGGAGTGCACAATGAGTGTAGATGAAGTCACCCCTGGAGGA  800

seq1  ACTCAACAGTCACTGAGGACCCAGGATGAGCCTAGAACTTGATCAAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACAGTCACTGAGGACCCAGGATGAGCCTAGAACTTGATCAAAATC  850

seq1  GCCAAATCCTCCCCACAGCCTTTATCTCCAGGCTACGGCCCAAGCAATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATCCTCCCCACAGCCTTTATCTCCAGGCTACGGCCCAAGCAATCA  900

seq1  CCCAGATCATTGAGGGCCCTGGCTCCAGCCTCTCCTCCTCCTGCCGCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATCATTGAGGGCCCTGGCTCCAGCCTCTCCTCCTCCTGCCGCAGC  950

seq1  TGGACCATGGTGGCCAGCTCCCTGTCCAGGGCTTTGGACTGCTCCTCTCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCATGGTGGCCAGCTCCCTGTCCAGGGCTTTGGACTGCTCCTCTCG  1000

seq1  CCTCTGCTGCCTCCACTCCCAAGCCTCGCCACAAGGCCTACAGGCCAGGC  1050
      |||||||||||||||||||||||||||| |||||||| || ||| || | 
seq2  CCTCTGCTGCCTCCACTCCCAAGCCTCG-CACAAGGCTTAAAGG-CAAGT  1048

seq1  CTTGGAG-CTCAGCCTCCTGGCACATCCGCCTCCTGGCCTCTCGCTTCTC  1099
      ||||||| |||||||| ||||| |||||||||||||||| ||||| ||||
seq2  CTTGGAGCCTCAGCCT-CTGGC-CATCCGCCTCCTGGCCCCTCGC-TCTC  1095

seq1  CCA--GCGCCGGCGCCTC  1115
      |||  || | ||||||||
seq2  CCAAGGCCCGGGCGCCTC  1113

seq1: chr5_124968547_124969582
seq2: B6Ng01-167K19.g_67_1092 (reverse)

seq1  CCAGAGGGGATTTTTAATCTGAAGGCTTCTGGGGTGAGACAGAAGAGACC  50
      ||||||||||  |||||| ||||||| ||| ||  || |||||||||| |
seq2  CCAGAGGGGA--TTTAATTTGAAGGCCTCTTGGTAGA-ACAGAAGAGA-C  46

seq1  GGAATACAGCACCTGTCAGGATTCAGAAATC-TAGTGGCCCATGTAGGGT  99
      ||||||||   ||| ||| || ||||||||| |||| |||||||||||||
seq2  GGAATACA--CCCTTTCA-GAATCAGAAATCTTAGTTGCCCATGTAGGGT  93

seq1  GGGTATTTCTGAACAACCCTCCTTCCCCTAGCTCACCTCCACAGAAATCT  149
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTT-TGAACAACCCTCCTTCCCCTAGCTCACCTCCACAGAAATCT  142

seq1  GACCCCTGAGCCTTCATATGACCCTTGACCCTAGCCCTGTACCATTTCAC  199
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GA-CCCTGAGCCTTCATATGACCCTTGACCCTAGCCCTGTACCA-TTCAC  190

seq1  TCTTGACTGGTCCTGAAAGTCACCAGCGCCAACCCTCTTTCTCCCAGGGT  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTGGT-CTGAAAGTCACCAGCGCCAACCCTCTTTCTCCCAGGGT  239

seq1  ACTGCCTGCCCCATGCCTGTTCCTCTAGTAGGTGGGGAACACTTGGTCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTGCCCCATGCCTGTTCCTCTAGTAGGTGGGGAACACTTGGTCCC  289

seq1  TGCTGTGTTCCCATGGTTTCCCCACAAAATAAAAATAACCCTGAAGGCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTTCCCATGGTTTCCCCACAAAATAAAAATAACCCTGAAGGCAG  339

seq1  CCTGGCATCTGCCCGGCTCTCGGCTCCGGCGGGGGCCGCAGCGTGGAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATCTGCCCGGCTCTCGGCTCCGGCGGGGGCCGCAGCGTGGAGAA  389

seq1  CGCAGCTCTCCAGCTGGTCCCACGGAAGCTGAGCACACTCAGCATTAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTCTCCAGCTGGTCCCACGGAAGCTGAGCACACTCAGCATTAAGT  439

seq1  GCATCTCCTGCATACACCTTATGCTGGTCCACAGGGGTTCGAGAGCTGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCCTGCATACACCTTATGCTGGTCCACAGGGGTTCGAGAGCTGCA  489

seq1  AGGGCAAAGCCACATTCCCAGAGGGAAGGGAACCTCAGGAAAGGTAGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAAGCCACATTCCCAGAGGGAAGGGAACCTCAGGAAAGGTAGCTC  539

seq1  AGAGCTAGAGTGGGCAGTGGACTTCCCAGATCACCCCAAGAGGCCCCATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAGAGTGGGCAGTGGACTTCCCAGATCACCCCAAGAGGCCCCATA  589

seq1  GGCTACATCAAGATTTTTCCTAAATAAAGTGATTCCACAATTCCAATCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACATCAAGATTTTTCCTAAATAAAGTGATTCCACAATTCCAATCCT  639

seq1  AGACATGGACCCCACAGAGCTGAAACCAGGCCTCCCCACAAACACTGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGACCCCACAGAGCTGAAACCAGGCCTCCCCACAAACACTGAAA  689

seq1  AGATGTTCCCAGCAGCCAAAACATGGATACAACCAGAAAGCCCCAACTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTCCCAGCAGCCAAAACATGGATACAACCAGAAAGCCCCAACTAT  739

seq1  GGGTGAACAACAGACACGGTCCATCCGTGCATAGAATAGGACACAGCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAACAACAGACACGGTCCATCCGTGCATAGAATAGGACACAGCAGT  789

seq1  GAAAAGAAACTGAGAAATCGCCAACATCCATTAGAATACAGTCAGACCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAACTGAGAAATCGCCAACATCCATTAGAATACAGTCAGACCTA  839

seq1  GAAAGCATAAAAGTAAGATGCCAGACACCCTGATGGGAGAGGGACCACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATAAAAGTAAGATGCCAGACACCCTGATGGGAGAGGGACCACTA  889

seq1  CACTTTTCTCCCATTCAAACTGGGCAACCGAGGCACACAAAGATCTTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCTCCCATTCAAACTGGGCAACCGAGGCACACAAAGATCTTGTG  939

seq1  AGTCTGTTAAGTCACATAGCACCATTAATACGTTGCTTTCTAAAGCCATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTAAGTCACATAGCACCATTAATACGTTGCTTTCTAAAGCCATC  989

seq1  AAATCCATCTCAACAAAGAACACCTCAAAGAGAATTC  1036
      |||||||||||||||||||||||||||||||||||||
seq2  AAATCCATCTCAACAAAGAACACCTCAAAGAGAATTC  1026