BAC Information

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BAC

Clone NameB6Ng01-168B24
Chromosome5 (Build37)
Map Location 82,916,218 - 82,917,327
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168B24.bB6Ng01-168B24.g
ACCDH959447DH959448
length1,1821,077
definitionDH959447|Mus musculus domesticus DNA, BAC clone: B6Ng01-168B24, 5' end.DH959448|Mus musculus domesticus DNA, BAC clone: B6Ng01-168B24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttgtaattgggttacctaactcatgatgatgccttccaggtc
catccatttgcctaggaatttcataaattcattccttttaatagctgagt
agtactccattgtgtaaatgtaccacattttttgtatccattcctctgtt
gaggggcatctgggttctttccagcttctggctattataaataaggctgc
tatgaatatagtgaaccatgtgtcctccttaccagttggaacattttctg
gatatatgcccaggagaggtattgcatgatactctggtagtagtatgtcc
aattttctgaggaactgccagactgatttccagagtgcttgtagaaagct
tgcaatcccaccaaaaaaggaggagtgttcctctttcttcacatccttgc
cagcatctgctgtcacctgaatttttgatcttagccattctgactggtgt
gaggtagaatctcacagttgttttgatttgcattccctgatgattaagga
tgatgaacattttttttttcaggtgcttctcagccactaggtattcctca
ggtgagaattctttctttaactctgagccccattttttaaattaggttat
ttgatttctggagtccacttcttgagttctttatatgtattggatattag
tcctctatctgaattaggataggtaaagatcctttcccaatctgttggtg
gcctttttgtcttattgaaggtgttttttgccttgcagaagctttgcaat
tttataaggtcccatttgtctattctcgatcttacagcacaagccattgc
tgttctattcaggaatttttcccctgtgcccatatcttacaggcttttcc
ccactttcccctctatatatttcactgtctctgttttatgtggaattcct
tgatccacttagatttgatcttagtacaacgagataggaatggatcattc
gcattcttctacatgatactgccagtgtgccagcacatttgttgaaattc
tgtcttttttccactggatgtttagctccctgtcaagatcaaggaccata
tgtgggtagttagattctgggtctcaatctatcaattgtaacttcctgag
gccttaacaattcatgcgttatccaatggtctggatcactagctgcagcg
atccatagtccttacctggagagaagaattgc
gaattccacaggaagaccagcacagtcaactaacctggagctttggtgct
ctaagagattgaaccaccaatcaaagataatacatggaccggagctagtc
cctcttcccctacctctcctgcagagatatagcagatatgcagcttggcc
ttcatgtgaatcccaaacagctagtgtagggtgtattctaacaactgttg
tctgtatgtgggatgtgttcctatagccgggctgccttatctggcctcag
gaagtaaataagcaaaaattaattaattaattaattaattaattaattaa
aaaagatatttttatagacataaaatactcagaagaattcttctgttgag
aatgtgagatcttaccaaatctattcacattaatgttcttgaaatattta
gttatttgttaggtttacatcatgcttgttgtatacttttgacatactgt
tttatactattctaatagagaagtgagatgtttttatatcatgctcaagt
aataatataagaaagttgaaccctccctacagtgattgtaatggtgtgct
ttgaatcatagctatttttcagtcttttatttaagataaccatggaggta
aaaataaggtgaaagaaaacaaaacctgtttgaacatttgtttgccaaat
ccagttctgaattgcttagcaaatctttagcttttagaagaaactgttat
taagatgagctattgagagttaggagagctaagctaatgtctcaaggtta
ctaactcacagtccaaattcagtatgtgtgagaaatgagaacaactcaac
tcaactactcttcttgcagaggatcagggaagtaactacgtgtgacaaag
atgttggttgtttgtcatgtcttattaacagatgggaaataaaacgtgag
atttatggattttctttggtcatgatgaaactctgatgaaagggagagag
actagaccctattttctttctctctgttacttctgccttaagtgccacac
cactgcatagtgattctcccattaagaaaccaggaagcaccatgagttta
gaggtgagttaggcttgtatgtttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82916218_82917327
seq2: B6Ng01-168B24.g_66_1142

seq1  GAATTCCACAGGAAGACCAGCACAGTCAACTAACCTGGAGCTTTGGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGAAGACCAGCACAGTCAACTAACCTGGAGCTTTGGTGCT  50

seq1  CTAAGAGATTGAACCACCAATCAAAGATAATACATGGACCGGAGCTAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGATTGAACCACCAATCAAAGATAATACATGGACCGGAGCTAGTC  100

seq1  CCTCTTCCCCTACCTCTCCTGCAGAGATATAGCAGATATGCAGCTTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCCCTACCTCTCCTGCAGAGATATAGCAGATATGCAGCTTGGCC  150

seq1  TTCATGTGAATCCCAAACAGCTAGTGTAGGGTGTATTCTAACAACTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGAATCCCAAACAGCTAGTGTAGGGTGTATTCTAACAACTGTTG  200

seq1  TCTGTATGTGGGATGTGTTCCTATAGCCGGGCTGCCTTATCTGGCCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGTGGGATGTGTTCCTATAGCCGGGCTGCCTTATCTGGCCTCAG  250

seq1  GAAGTAAATAAGCAAAAATTAATTAATTAATTAATTAATTAATTAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAATAAGCAAAAATTAATTAATTAATTAATTAATTAATTAATTAA  300

seq1  AAAAGATATTTTTATAGACATAAAATACTCAGAAGAATTCTTCTGTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATTTTTATAGACATAAAATACTCAGAAGAATTCTTCTGTTGAG  350

seq1  AATGTGAGATCTTACCAAATCTATTCACATTAATGTTCTTGAAATATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGATCTTACCAAATCTATTCACATTAATGTTCTTGAAATATTTA  400

seq1  GTTATTTGTTAGGTTTACATCATGCTTGTTGTATACTTTTGACATACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGTTAGGTTTACATCATGCTTGTTGTATACTTTTGACATACTGT  450

seq1  TTTATACTATTCTAATAGAGAAGTGAGATGTTTTTATATCATGCTCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTATTCTAATAGAGAAGTGAGATGTTTTTATATCATGCTCAAGT  500

seq1  AATAATATAAGAAAGTTGAACCCTCCCTACAGTGATTGTAATGGTGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATAAGAAAGTTGAACCCTCCCTACAGTGATTGTAATGGTGTGCT  550

seq1  TTGAATCATAGCTATTTTTCAGTCTTTTATTTAAGATAACCATGGAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCATAGCTATTTTTCAGTCTTTTATTTAAGATAACCATGGAGGTA  600

seq1  AAAATAAGGTGAAAGAAAACAAAACCTGTTTGAACATTTGTTTGCCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGGTGAAAGAAAACAAAACCTGTTTGAACATTTGTTTGCCAAAT  650

seq1  CCAGTTCTGAATTGCTTAGCAAATCTTTAGCTTTTAGAAGAAACTGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTGAATTGCTTAGCAAATCTTTAGCTTTTAGAAGAAACTGTTAT  700

seq1  TAAGATGAGCTATTGAGAGTTAGGAGAGCTAAGCTAATGTCTCAAGGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGAGCTATTGAGAGTTAGGAGAGCTAAGCTAATGTCTCAAGGTTA  750

seq1  CTAACTCACAGTCCAAATTCAGTATGTGTGAGAAATGAGAACAACTCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCACAGTCCAAATTCAGTATGTGTGAGAAATGAGAACAACTCAAC  800

seq1  TCAACTACTCTTCTTGCAGAGGATCAGGGAAGTAACTACGTGTGACAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTACTCTTCTTGCAGAGGATCAGGGAAGTAACTACGTGTGACAAAG  850

seq1  ATGTTGGTTGTTTGTCATGTCTTATTAACAGATGGGAAAATAAAACGTGA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGTTGGTTGTTTGTCATGTCTTATTAACAGATGGG-AAATAAAACGTGA  899

seq1  GATTTTAATGGATTTTCTTTGGTCATTGATTGAAACTCTTGAATGAAAAG  950
      |||||  |||||||||||||||||| ||| |||||||||   ||| ||||
seq2  GATTT--ATGGATTTTCTTTGGTCA-TGA-TGAAACTCT--GATG-AAAG  942

seq1  GGAGAAGAAGGACTAGAACCCTATTTTCTTTCTCTCTGTTTACCTTCTGG  1000
      |||| |||  |||||| |||||||||||||||||||||||   |||||| 
seq2  GGAG-AGA--GACTAG-ACCCTATTTTCTTTCTCTCTGTT--ACTTCTG-  985

seq1  CCTTTAAGTTGCCACACACTTGCATTAAGTGATTCTTCCACATTAAGAAA  1050
       | ||||| ||||||||   |||||  |||||||||  | ||||||| ||
seq2  -CCTTAAG-TGCCACACCACTGCAT--AGTGATTCT--CCCATTAAG-AA  1028

seq1  ACCAGGAGAGCAAACCATTGAAATCTTTAGAAGTGTGAGTTAAAGCTATG  1100
      ||||||| |||  |||| |||    ||||||   ||||||| | ||| ||
seq2  ACCAGGA-AGC--ACCA-TGA---GTTTAGA--GGTGAGTT-AGGCT-TG  1067

seq1  TATGTTTTTC  1110
      ||||||||||
seq2  TATGTTTTTC  1077