BAC Information

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BAC

Clone NameB6Ng01-168E13
Chromosome5 (Build37)
Map Location 92,531,486 - 92,679,366
singlet/doubletdoublet
Overlap geneVdp, LOC100040605, U90926, Ppef2
Upstream geneAreg, Btc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2
Downstream geneAsahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168E13.bB6Ng01-168E13.g
ACCDH959561DH959562
length9231,070
definitionDH959561|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E13, 5' end.DH959562|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,531,486 - 92,532,407)(92,678,299 - 92,679,366)
sequence
gaattcattggacagtgaggatggccttaactcccaatcctctggcttca
gtgtcccaagagctgagatcacggttacccaagtaaccgcagcacgcaca
catagggatcagtatttatcacgcaggctcctgtgaccaagtttccctct
cttctcctgcagctttgtacctattacccaccaggtgtcttggcctaagt
taggggacaccctgtgctctgaacttgtctacagaaaatggctctgcttt
aggtgacctcccaggcatccagaccacctgtccatccattctgagtttgg
ctctccctgtgtattgtttttatggctaataaaaagcgaaatgtgctggg
tgtggtggcgcacacctttaatcccagcactcgagaggcagaggccgttg
gatttctgagttcaaggtcagcctggtctacaaagtaagttccaggacag
ccagggctacacagagaaaccctgtcttgaaaaagaagaaaaaaaaaaaa
aaagcgaaatgcacttggaagcactctttgaattacaggatcgagcattt
gagccaaagagatgaagaggccgcatgctgatgaagacaggacacattgg
acccaaactgagagaatgcccacgatttggctgtagccttcaatgagagg
tagaaaccagacagccaggagttaagacaatatgtggtgaggaagtcaga
gcgcccgagaaaatccgttgatatttatggtagttgagtgaggtttgagc
tgtgtttgttttggctgtagagttgccagggctacgacaaagcacaggct
gaactgtttctgtgaccacctttgatgtctgaagctcaaatcatctattt
ctctcctcccttcctctctccttcttcctctccctccccacctgtgtgtg
tgtgtggtgtgtgttgtggtgtg
gaattcttcagctaccttgtggaccatttcactcccagcagccaccatga
gagtgagtaggagttgtcatgctacgccgtcttggcttaataccgtagtg
tcggtgtggtagggtcaccacgggagtgtaactgggactctttctgccta
gagcttgggattgtgtaggaaagttggcaaacgaatgaccgagtaaactt
ttagcctgggctctcctataaacaaacatccctggagataagtgtttagg
ctcaggaggaagaaaggagtggagagaaatggaggaggtggagagagatg
cggaaaacgggatcgaaggctagttcagggggcctgcgaaatactgaaga
atgaacctccaggcaccagttcctggttgaaggcatcctacagagacgga
tacaagggtggttgactccgcagcctttctggttctgctacccatgatcc
tccgcggtccgggagggaaacccttggcctttagagcctggtagctggag
aaggctaccacattggtgcgagcctcttctgtacccactgagcaaggtga
atggcctagaatcctttcctcattggctttgccctgctcaactctgcatg
tcgggatgtcctctgaccgatcttttgatttttaaaagaatatttatttt
aaatcacgtgtaaaagtgtgtgtgtgtgcccttgtgaacgccggtgtctg
aggaggccagaagagggtgttaggtccccaggagctgggatttagagatc
actgtgagatgccagatgtggggtgctaggaatctgactcaggtcttttg
gacgagctgccagcactcctaacagcagagacgtaatctctccatctccc
attttctggtgatttttaaaaaaataaatgtagaccaactattgactgta
caagcgcagaaacataaccttcctcctgcaccccctaatcacctgaactc
agtttctctgtcctattctggggcttggagccagtgccggactgcagggt
cgcacagcaatgacggtccctcaaggtgggtcctaaagctggcctgcttc
gccttgtgtctgaacctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_92531486_92532407
seq2: B6Ng01-168E13.b_47_969

seq1  GAATTCATTGGACAGTGAGGATGGCCTTAACTCCCAATCCTCTGGCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGACAGTGAGGATGGCCTTAACTCCCAATCCTCTGGCTTCA  50

seq1  GTGTCCCAAGAGCTGAGATCACGGTTACCCAAGTAACCGCAGCACGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCAAGAGCTGAGATCACGGTTACCCAAGTAACCGCAGCACGCACA  100

seq1  CATAGGGATCAGTATTTATCACGCAGGCTCCTGTGACCAAGTTTCCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGATCAGTATTTATCACGCAGGCTCCTGTGACCAAGTTTCCCTCT  150

seq1  CTTCTCCTGCAGCTTTGTACCTATTACCCACCAGGTGTCTTGGCCTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTGCAGCTTTGTACCTATTACCCACCAGGTGTCTTGGCCTAAGT  200

seq1  TAGGGGACACCCTGTGCTCTGAACTTGTCTACAGAAAATGGCTCTGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGACACCCTGTGCTCTGAACTTGTCTACAGAAAATGGCTCTGCTTT  250

seq1  AGGTGACCTCCCAGGCATCCAGACCACCTGTCCATCCATTCTGAGTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACCTCCCAGGCATCCAGACCACCTGTCCATCCATTCTGAGTTTGG  300

seq1  CTCTCCCTGTGTATTGTTTTTATGGCTAATAAAAAGCGAAATGTGCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTGTGTATTGTTTTTATGGCTAATAAAAAGCGAAATGTGCTGGG  350

seq1  TGTGGTGGCGCACACCTTTAATCCCAGCACTCGAGAGGCAGAGGCCGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGCGCACACCTTTAATCCCAGCACTCGAGAGGCAGAGGCCGTTG  400

seq1  GATTTCTGAGTTCAAGGTCAGCCTGGTCTACAAAGTAAGTTCCAGGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTCAAGGTCAGCCTGGTCTACAAAGTAAGTTCCAGGACAG  450

seq1  CCAGGGCTACACAGAGAAACCCTGTCTTGAAAAAGAAGAAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTACACAGAGAAACCCTGTCTTGAAAAAGAAGAAAAAAAAAAAA  500

seq1  AAAGCGAAATGCACTTGGAAGCACTCTTTGAATTACAGGATCGAGCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGAAATGCACTTGGAAGCACTCTTTGAATTACAGGATCGAGCATTT  550

seq1  GAGCCAAAGAGATGAAGAGGCCGCATGCTGATGAAGACAGGACACATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAAGAGATGAAGAGGCCGCATGCTGATGAAGACAGGACACATTGG  600

seq1  ACCCAAACTGAGAGAATGCCCACGATTTGGCTGTAGCCTTCAATGAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACTGAGAGAATGCCCACGATTTGGCTGTAGCCTTCAATGAGAGG  650

seq1  TAGAAACCAGACAGCCAGGAGTTAAGACAATATGTGGTGAGGAAGTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACCAGACAGCCAGGAGTTAAGACAATATGTGGTGAGGAAGTCAGA  700

seq1  GCGCCCGAGAAAATCCGTTGATATTTATGGTAGTTGAGTGAGGTTTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCGAGAAAATCCGTTGATATTTATGGTAGTTGAGTGAGGTTTGAGC  750

seq1  TGTGTTTGTTTTGGCTGTAGAGTTGCCAGGGCTACGAC-AAGCACAGGCT  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTGTTTGTTTTGGCTGTAGAGTTGCCAGGGCTACGACAAAGCACAGGCT  800

seq1  GAACTG-TTCTGTGACCACCTTTGATGTCTGAAGCTCAAATCATCTA-TT  847
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  GAACTGTTTCTGTGACCACCTTTGATGTCTGAAGCTCAAATCATCTATTT  850

seq1  CTCTCCTCCCTTCCTCTCTCCTTCTTCCTCTCCCT-CCCACCTGTGTGTG  896
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTCTCCTCCCTTCCTCTCTCCTTCTTCCTCTCCCTCCCCACCTGTGTGTG  900

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTG  922
      |||||| |||||||| |||| |||||
seq2  TGTGTG-GTGTGTGT-TGTG-GTGTG  923

seq1: chr5_92678299_92679366
seq2: B6Ng01-168E13.g_67_1136 (reverse)

seq1  CCTA-GTTCAGACACAAAGGGCGAAGGCAGGCCAGCTTAGGAACCAACCT  49
      |||| ||||||||||||  |||||| ||||||||||||  | ||| ||||
seq2  CCTAGGTTCAGACACAA--GGCGAA-GCAGGCCAGCTTTAGGACCCACCT  47

seq1  TGAGGGACCGTCAATGCTGTGCGACCCTGCCAGTCCGGCACTGGCTCCA-  98
      ||||||||||||| ||||||||||||||| ||||||||||||||||||| 
seq2  TGAGGGACCGTCATTGCTGTGCGACCCTG-CAGTCCGGCACTGGCTCCAA  96

seq1  -GCCCAGAATAGGACAGAGAAACTGAAGTCAGGTGATTAGGGGGTGCAGG  147
        ||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  GCCCCAGAATAGGACAGAGAAACTGAGTTCAGGTGATTAGGGGGTGCAGG  146

seq1  AGGAAGGTTATGTTTCTGTGCTTGTACAGTCATTAGTTGGTCTACATTTA  197
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  AGGAAGGTTATGTTTCTGCGCTTGTACAGTCAATAGTTGGTCTACATTTA  196

seq1  TTTTTTTAAAAATCACCAG-AAATGGGAGATGGAGAGATTACGTCTCTGC  246
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAAATCACCAGAAAATGGGAGATGGAGAGATTACGTCTCTGC  246

seq1  TGTTAGGAGTGCTGGCAGCTCGTCCAAAAGACCTGAGTCAGATTCCTAGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGAGTGCTGGCAGCTCGTCCAAAAGACCTGAGTCAGATTCCTAGC  296

seq1  A-CCCACATCTGGCATCTCACAGTGATCTCTAAAT-CCAGCTCCTGGGGA  344
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCCCACATCTGGCATCTCACAGTGATCTCTAAATCCCAGCTCCTGGGGA  346

seq1  CCTAACACCCTCTTCTGGCCTCCTCAGACACCGGCGTTCACAAGGGCACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACCCTCTTCTGGCCTCCTCAGACACCGGCGTTCACAAGGGCACA  396

seq1  CACACACACTTTTACACGTGATTTAAAATAAATATTCTTTTAAAAATCAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTTTTACACGTGATTTAAAATAAATATTCTTTTAAAAATCAA  446

seq1  AAGATCGGTCAGAGGACATCCCGACATGCAGAGTTGAGCAGGGCAAAGCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCGGTCAGAGGACATCCCGACATGCAGAGTTGAGCAGGGCAAAGCC  496

seq1  AATGAGGAAAGGATTCTAGGCCATTCACCTTGCTCAGTGGGTACAGAAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAAAGGATTCTAGGCCATTCACCTTGCTCAGTGGGTACAGAAGA  546

seq1  GGCTCGCACCAATGTGGTAGCCTTCTCCAGCTACCAGGCTCTAAAGGCCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGCACCAATGTGGTAGCCTTCTCCAGCTACCAGGCTCTAAAGGCCA  596

seq1  AGGGTTTCCCTCCCGGACCGCGGAGGATCATGGGTAGCAGAACCAGAAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCCCTCCCGGACCGCGGAGGATCATGGGTAGCAGAACCAGAAAG  646

seq1  GCTGCGGAGTCAACCACCCTTGTATCCGTCTCTGTAGGATGCCTTCAACC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGGAGTCAACCACCCTTGTATCCGTCTCTGTAGGATGCCTTCAACC  696

seq1  AGGAACTGGTGCCTGGAGGTTCATTCTTCAGTATTTCGCAGGCCCCCTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGGTGCCTGGAGGTTCATTCTTCAGTATTTCGCAGGCCCCCTGA  746

seq1  ACTAGCCTTCGATCCCGTTTTCCGCATCTCTCTCCACCTCCTCCATTTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCTTCGATCCCGTTTTCCGCATCTCTCTCCACCTCCTCCATTTCT  796

seq1  CTCCACTCCTTTCTTCCTCCTGAGCCTAAACACTTATCTCCAGGGATGTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTCCTTTCTTCCTCCTGAGCCTAAACACTTATCTCCAGGGATGTT  846

seq1  TGTTTATAGGAGAGCCCAGGCTAAAAGTTTACTCGGTCATTCGTTTGCCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAGGAGAGCCCAGGCTAAAAGTTTACTCGGTCATTCGTTTGCCA  896

seq1  ACTTTCCTACACAATCCCAAGCTCTAGGCAGAAAGAGTCCCAGTTACACT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTACACAATCCCAAGCTCTAGGCAGAAAGAGTCCCAGTTACACT  946

seq1  CCCGTGGTGACCCTACCACACCGACACTACGGTATTAAGCCAAGACGGCG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGGTGACCCTACCACACCGACACTACGGTATTAAGCCAAGACGGCG  996

seq1  TAGCATGACAACTCCTACTCACTCTCATGGTGGCTGCTGGGAGTGAAATG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGACAACTCCTACTCACTCTCATGGTGGCTGCTGGGAGTGAAATG  1046

seq1  GTCCACAAGGTAGCTGAAGAATTC  1068
      ||||||||||||||||||||||||
seq2  GTCCACAAGGTAGCTGAAGAATTC  1070