BAC Information

Click to search

BAC

Clone NameB6Ng01-169J23
Chromosome5 (Build37)
Map Location 80,705,726 - 80,772,059
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169J23.bB6Ng01-169J23.g
ACCDH960550DH960551
length1,140691
definitionDH960550|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J23, 5' end.DH960551|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,705,726 - 80,706,884)(80,771,369 - 80,772,059)
sequence
gaattcatatgctggccattcatataaacaaatgtagatatagactgttc
aatgaaaactgctgactatcagatacaggatatagatttctttctccatc
taagcatctacggaattccacattgctgtcttatataagcttttgtatat
attttatatttcctgtgtatgttttggaatggtgtatttcttgctaatag
tcgtggttagggtcgaaagcatctagaaataaaccatttcacttgaaact
aagacaaatgtagacgaatcaaaaataatcatgtctcaggcatttggatg
aatatgttaaattagagataaaagaacaggtaggacgattttttgataga
ttggagtattgtgttttgaaagagaggcaagtactaagcaacaaagacaa
ctgtgagatgatataattaaaccctttcatgacagaaaatattcctcctc
ctgctatagtttgaggctgtctttagcatgaaagacaaggttgcaattag
agagatgcagtgcacaagtagcaaattatgtttattaatggataaaataa
ccacaggtattttgtatgtgagcaaaaaatgaaaattacatgaacaagtt
ttgataaagtacagaagaatatttttgtgatgataatatttctttaaatg
acttgtgcaaaaagagctgtggagtggctcatttttaacaactgttttag
tctcggtcagttaagaccttttgaaatcacagaaatgtaaaacataagga
acattacttagaagatattgtgcaacttattcaaataaaattatgaccat
ttaaactaagcatatacatattgtaaaatgaagcaatacttttgtttcct
aagattattagattgtgtattgttagggtgtttatggcaataaactttaa
aataagctgtttttattatatctgattttatttttgaaaaagcaatgcct
tttttgtagaagtgatatcagacttgagacccatttttattacttcattt
tacttgatatatcagaaagataccattacatagcagtttatatttctgag
aagtgaggtctgttacatcaacattatttgggacgagtagtagaatcact
atacaatgtactgaaattactaagtggtgaaaatgtaatg
acttcagaaaacatttataaacatttattaaaatagtagctaaagagaag
aaaattaggaatagacatgtgattcttggcttgatattttacagtgaaga
atgtggtacactataagttagaaccattctgaattttgaggttctcagtt
gtagcataagagttgggctcaataagcattaatgtttttggtttaaaaaa
atgtgacatttgattattttaattcaatcaactggtttctttatctattt
atctttctaaaagtctatccattatctatcaatcgatctatctatatatt
ttctacctatttacctatcatttatctatcctatttattcctctggctga
acccttcaaagctcactgcatggcttttattctgtgttatttttgttact
tctacaaattatttgacagaaataacaaagcaggtatgaaagaattttga
cactagttccagaagtttggtctattgtggtagagaacatgtatgacaca
cctccaagttagtaagcatgtatctcagagtttcttatttcttgttagat
cagaaagtacagagttaagaatgccatcatttggaaaagaggccccttgg
tattgcaaactttatgtgccccagtacaggggaaacaccagggccaagaa
gtgggagtgggtaggtagggaagaacagtgtgtgtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80705726_80706884
seq2: B6Ng01-169J23.b_50_1189

seq1  GAATTCATATGCTGGCCATTCATATAAACAAATGTAGATATAGACTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGCTGGCCATTCATATAAACAAATGTAGATATAGACTGTTC  50

seq1  AATGAAAACTGCTGACTATCAGATACAGGATATAGATTTCTTTCTCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAACTGCTGACTATCAGATACAGGATATAGATTTCTTTCTCCATC  100

seq1  TAAGCATCTACGGAATTCCACATTGCTGTCTTATATAAGCTTTTGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATCTACGGAATTCCACATTGCTGTCTTATATAAGCTTTTGTATAT  150

seq1  ATTTTATATTTCCTGTGTATGTTTTGGAATGGTGTATTTCTTGCTAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATTTCCTGTGTATGTTTTGGAATGGTGTATTTCTTGCTAATAG  200

seq1  TCGTGGTTAGGGTCGAAAGCATCTAGAAATAAACCATTTCACTTGAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGTTAGGGTCGAAAGCATCTAGAAATAAACCATTTCACTTGAAACT  250

seq1  AAGACAAATGTAGACGAATCAAAAATAATCATGTCTCAGGCATTTGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAATGTAGACGAATCAAAAATAATCATGTCTCAGGCATTTGGATG  300

seq1  AATATGTTAAATTAGAGATAAAAGAACAGGTAGGACGATTTTTTGATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTAAATTAGAGATAAAAGAACAGGTAGGACGATTTTTTGATAGA  350

seq1  TTGGAGTATTGTGTTTTGAAAGAGAGGCAAGTACTAAGCAACAAAGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTATTGTGTTTTGAAAGAGAGGCAAGTACTAAGCAACAAAGACAA  400

seq1  CTGTGAGATGATATAATTAAACCCTTTCATGACAGAAAATATTCCTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGATGATATAATTAAACCCTTTCATGACAGAAAATATTCCTCCTC  450

seq1  CTGCTATAGTTTGAGGCTGTCTTTAGCATGAAAGACAAGGTTGCAATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATAGTTTGAGGCTGTCTTTAGCATGAAAGACAAGGTTGCAATTAG  500

seq1  AGAGATGCAGTGCACAAGTAGCAAATTATGTTTATTAATGGATAAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCAGTGCACAAGTAGCAAATTATGTTTATTAATGGATAAAATAA  550

seq1  CCACAGGTATTTTGTATGTGAGCAAAAAATGAAAATTACATGAACAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGTATTTTGTATGTGAGCAAAAAATGAAAATTACATGAACAAGTT  600

seq1  TTGATAAAGTACAGAAGAATATTTTTGTGATGATAATATTTCTTTAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAGTACAGAAGAATATTTTTGTGATGATAATATTTCTTTAAATG  650

seq1  ACTTGTGCAAAAAGAGCTGTGGAGTGGCTCATTTTTAACAACTGTTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGCAAAAAGAGCTGTGGAGTGGCTCATTTTTAACAACTGTTTTAG  700

seq1  TCTCGGTCAGTTAAGACCTTTTGAAATCACAGAAATGTAAAACATAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGTCAGTTAAGACCTTTTGAAATCACAGAAATGTAAAACATAAGGA  750

seq1  ACATTACTTAGAAGATATTGTGCAACTTATTCAAATAAAATTATGACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTTAGAAGATATTGTGCAACTTATTCAAATAAAATTATGACCAT  800

seq1  TTAAACTAAGCATATACATATTGTAAAATGAAGCAATACTTTTGTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTAAGCATATACATATTGTAAAATGAAGCAATACTTTTGTTTCCT  850

seq1  AAGATTATTAGATTGTGTATTGTTAGGGTGTTTATGGCAATAAACTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATTAGATTGTGTATTGTTAGGGTGTTTATGGCAATAAACTTTAA  900

seq1  AATAAGCTGTTTTTATTATATCTGATTTTATTTTTGAAAAAAGCAAATGC  950
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  AATAAGCTGTTTTTATTATATCTGATTTTATTTTTG-AAAAAGC-AATGC  948

seq1  CTTTTTTGTAAGAAGTGATATCAGACTTGAGACCCATTTTTTATTACTTC  1000
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  CTTTTTTGT-AGAAGTGATATCAGACTTGAGACCCA-TTTTTATTACTTC  996

seq1  ATTTTAACTTGATAATATCAGGAAAGATACCATTACAATAGCAGTTTATA  1050
      ||||| ||||||| |||||| ||||||||||||||| |||||||||||||
seq2  ATTTT-ACTTGAT-ATATCA-GAAAGATACCATTAC-ATAGCAGTTTATA  1042

seq1  TTTCTGAGAAAGTGAGGGTCTG-TACATCAACATAATTTGGGGACAGAGT  1099
      |||||||| |||||| |||||| ||||||||||| |||| ||||| ||||
seq2  TTTCTGAG-AAGTGA-GGTCTGTTACATCAACATTATTT-GGGAC-GAGT  1088

seq1  AGTAGAATCCAACTATTAACAATGTTACTTGAAATATACTAAAGTGTGAA  1149
      |||||||||  |||||  |||||| ||| |||||| |||| |||||   |
seq2  AGTAGAATC--ACTAT--ACAATG-TAC-TGAAAT-TACT-AAGTGGTGA  1130

seq1  AAATGTAATG  1159
      ||||||||||
seq2  AAATGTAATG  1140

seq1: chr5_80771369_80772059
seq2: B6Ng01-169J23.g_73_763 (reverse)

seq1  CCCCCCACACACACTGTTCTTCCCTACCTACCCACTCCCACTTCTTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACACACACTGTTCTTCCCTACCTACCCACTCCCACTTCTTGGCC  50

seq1  CTGGTGTTTCCCCTGTACTGGGGCACATAAAGTTTGCAATACCAAGGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTTCCCCTGTACTGGGGCACATAAAGTTTGCAATACCAAGGGGC  100

seq1  CTCTTTTCCAAATGATGGCATTCTTAACTCTGTACTTTCTGATCTAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCCAAATGATGGCATTCTTAACTCTGTACTTTCTGATCTAACAA  150

seq1  GAAATAAGAAACTCTGAGATACATGCTTACTAACTTGGAGGTGTGTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGAAACTCTGAGATACATGCTTACTAACTTGGAGGTGTGTCATA  200

seq1  CATGTTCTCTACCACAATAGACCAAACTTCTGGAACTAGTGTCAAAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTCTACCACAATAGACCAAACTTCTGGAACTAGTGTCAAAATTC  250

seq1  TTTCATACCTGCTTTGTTATTTCTGTCAAATAATTTGTAGAAGTAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACCTGCTTTGTTATTTCTGTCAAATAATTTGTAGAAGTAACAAA  300

seq1  AATAACACAGAATAAAAGCCATGCAGTGAGCTTTGAAGGGTTCAGCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACAGAATAAAAGCCATGCAGTGAGCTTTGAAGGGTTCAGCCAGA  350

seq1  GGAATAAATAGGATAGATAAATGATAGGTAAATAGGTAGAAAATATATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAATAGGATAGATAAATGATAGGTAAATAGGTAGAAAATATATAG  400

seq1  ATAGATCGATTGATAGATAATGGATAGACTTTTAGAAAGATAAATAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCGATTGATAGATAATGGATAGACTTTTAGAAAGATAAATAGATA  450

seq1  AAGAAACCAGTTGATTGAATTAAAATAATCAAATGTCACATTTTTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCAGTTGATTGAATTAAAATAATCAAATGTCACATTTTTTTAAA  500

seq1  CCAAAAACATTAATGCTTATTGAGCCCAACTCTTATGCTACAACTGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACATTAATGCTTATTGAGCCCAACTCTTATGCTACAACTGAGAA  550

seq1  CCTCAAAATTCAGAATGGTTCTAACTTATAGTGTACCACATTCTTCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAATTCAGAATGGTTCTAACTTATAGTGTACCACATTCTTCACTG  600

seq1  TAAAATATCAAGCCAAGAATCACATGTCTATTCCTAATTTTCTTCTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCAAGCCAAGAATCACATGTCTATTCCTAATTTTCTTCTCTTT  650

seq1  AGCTACTATTTTAATAAATGTTTATAAATGTTTTCTGAAGT  691
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTATTTTAATAAATGTTTATAAATGTTTTCTGAAGT  691