BAC Information

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BAC

Clone NameB6Ng01-173C05
Chromosome5 (Build37)
Map Location 140,934,394 - 141,128,738
singlet/doubletdoublet
Overlap geneEG231836, Chst12, Grifin, Lfng, Ttyh3
Upstream gene3110082I17Rik, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291
Downstream geneIqce, AA881470, 6530401C20Rik, Gna12, Card11, LOC623466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173C05.bB6Ng01-173C05.g
ACCGA001569GA001570
length471780
definitionB6Ng01-173C05.b B6Ng01-173C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,934,394 - 140,934,870)(141,127,968 - 141,128,738)
sequence
actctgtagaccaggttggcacaaactcacattgtagcttagaatggtct
taaacttccctctcttgacttttattttatttatttggtttttcgagaca
gggtttctctgtgtagccctggctgtcctggaactcactttgcagaccag
gctagcctcaaactcagaaatctgcctgcctctgcctcccaagtgctggg
attaaaggtgtgtgccaccacgcccggcccctctcttggctttcacatcc
cacagcctgattacaggtgtgccactgcagatgtgcaccacccaccctgc
ctagaagtccttttgcttctaagaggcctgtccccagatgtgtgaactat
ctcctagcttccagctgctgcaggacaccactcctgtaccaagtggctac
actgccactgtccatggctctgtgaggggcactcttattaagattagaca
ctcgaggggctgtggttatcg
gaattccattgttctggctgcggccccacatctgggggctgggccaggct
ggacatatacaactggcttctggctttctcccactggttgcaggtcttga
gacttctcaggagcctcagaccaaccacctcccttcctagagggatagcc
ccagaggactcctgacctcagtccctgggtcttctgtttgaaatgtttct
gcaaaggcgctccctctgggtactcaatcttcagtgttggctccacacag
actctttttttcttttttcttttttccaagacagggtttctctgtgtagc
ccaggatctcctgcaacttgctctgttgatcaggttggccttgaacttag
aaatccacctacctctgcctctcaagtatggccaccatgcctggcttatg
tagacttttttttattcctgcctttaaaaaaattgtacgagtggaatttg
taaagatgtacatttgtgtgcatgcacattcacccatgtatatgggtata
gaggccagaggtcaacatcatgtaacttcctctatcatttccatgttatt
tttgacatgaggatctctcaccaattggctagactggctggctagcaggt
ccccaggagccactatctttgcctcctcccctctttggcctttgcatgaa
tgttaatggcgtcacattcatttgcacaaccaagccctctacctactgag
tgtcttcggctcacaaaaccctacttggaggcaaaatgaagggaagagag
gggaaaaaggagggaaagagggcaggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_140934394_140934870
seq2: B6Ng01-173C05.b_42_518

seq1  GAATTCACTCTGTAGACCAGGTTGGCACAAACTCACATTGTAGCTTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGTTGGCACAAACTCACATTGTAGCTTAGAA  50

seq1  TGGTCTTAAACTTCCCTCTCTTGACTTTTATTTTATTTATTTGGTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTAAACTTCCCTCTCTTGACTTTTATTTTATTTATTTGGTTTTTC  100

seq1  GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGCA  150

seq1  GACCAGGCTAGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTAGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGT  200

seq1  GCTGGGATTAAAGGTGTGTGCCACCACGCCCGGCCCCTCTCTTGGCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGTGTGTGCCACCACGCCCGGCCCCTCTCTTGGCTTTC  250

seq1  ACATCCCACAGCCTGATTACAGGTGTGCCACTGCAGATGTGCACCACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCACAGCCTGATTACAGGTGTGCCACTGCAGATGTGCACCACCCA  300

seq1  CCCTGCCTAGAAGTCCTTTTGCTTCTAAGAGGCCTGTCCCCAGATGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTAGAAGTCCTTTTGCTTCTAAGAGGCCTGTCCCCAGATGTGTG  350

seq1  AACTATCTCCTAGCTTCCAGCTGCTGCAGGACACCACTCCTGTACCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCTCCTAGCTTCCAGCTGCTGCAGGACACCACTCCTGTACCAAGT  400

seq1  GGCTACACTGCCACTGTCCATGGCTCTGTGAGGGGCACTCATATTAAGAT  450
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCTACACTGCCACTGTCCATGGCTCTGTGAGGGGCACTCTTATTAAGAT  450

seq1  TAGACACTCGAGGGGCTGTGGTTATCG  477
      |||||||||||||||||||||||||||
seq2  TAGACACTCGAGGGGCTGTGGTTATCG  477

seq1: chr5_141127968_141128738
seq2: B6Ng01-173C05.g_68_847 (reverse)

seq1  TCCACCTG-CCTC-TTCCCTCCTTTTT-CCCTCTCTT-CCTTCA-TTTGC  45
      |||||||| |||| ||||||||||||| ||||||||| |||||| |||||
seq2  TCCACCTGCCCTCTTTCCCTCCTTTTTCCCCTCTCTTCCCTTCATTTTGC  50

seq1  CTCC-AGTAGGG-TTTGTGAGCCGAAGACACTCAGTAGGTAGAGGGCTTG  93
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTAGGGTTTTGTGAGCCGAAGACACTCAGTAGGTAGAGGGCTTG  100

seq1  GTTGTGCAAATGAATGTGACGCCATTAACATTCATGCAAAGGCC-AAGA-  141
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  GTTGTGCAAATGAATGTGACGCCATTAACATTCATGCAAAGGCCAAAGAG  150

seq1  GGGAGGAGGCAAAGATAGTGGCTCCTGGGGACCTGCTAGCCAGCCAGTCT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGGCAAAGATAGTGGCTCCTGGGGACCTGCTAGCCAGCCAGTCT  200

seq1  AGCCAATTGGTGAGAGATCCTCATGTCAAAAATAACATGGAAATGATAGA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATTGGTGAGAGATCCTCATGTCAAAAATAACATGGAAATGATAGA  250

seq1  GGAAGTTACATGATGTTGACCTCTGGCCTCTATACCCATATACATGGGTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTACATGATGTTGACCTCTGGCCTCTATACCCATATACATGGGTG  300

seq1  AATGTGCATGCACACAAATGTACATCTTTACAAATTCCACTCGTACAATT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCATGCACACAAATGTACATCTTTACAAATTCCACTCGTACAATT  350

seq1  TTTTTAAAGGCAGGAATAAAAAAAAGTCTACATAAGCCAGGCATGGTGGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGGCAGGAATAAAAAAAAGTCTACATAAGCCAGGCATGGTGGC  400

seq1  CATACTTGAGAGGCAGAGGTAGGTGGATTTCTAAGTTCAAGGCCAACCTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTGAGAGGCAGAGGTAGGTGGATTTCTAAGTTCAAGGCCAACCTG  450

seq1  ATCAACAGAGCAAGTTGCAGGAGATCCTGGGCTACACAGAGAAACCCTGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAGAGCAAGTTGCAGGAGATCCTGGGCTACACAGAGAAACCCTGT  500

seq1  CTTGGAAAAAAGAAAAAAGAAAAAAAGAGTCTGTGTGGAGCCAACACTGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAAAAGAAAAAAGAAAAAAAGAGTCTGTGTGGAGCCAACACTGA  550

seq1  AGATTGAGTACCCAGAGGGAGCGCCTTTGCAGAAACATTTCAAACAGAAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAGTACCCAGAGGGAGCGCCTTTGCAGAAACATTTCAAACAGAAG  600

seq1  ACCCAGGGACTGAGGTCAGGAGTCCTCTGGGGCTATCCCTCTAGGAAGGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGACTGAGGTCAGGAGTCCTCTGGGGCTATCCCTCTAGGAAGGG  650

seq1  AGGTGGTTGGTCTGAGGCTCCTGAGAAGTCTCAAGACCTGCAACCAGTGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTGGTCTGAGGCTCCTGAGAAGTCTCAAGACCTGCAACCAGTGG  700

seq1  GAGAAAGCCAGAAGCCAGTTGTATATGTCCAGCCTGGCCCAGCCCCCAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCCAGAAGCCAGTTGTATATGTCCAGCCTGGCCCAGCCCCCAGA  750

seq1  TGTGGGGCCGCAGCCAGAACAATGGAATTC  771
      ||||||||||||||||||||||||||||||
seq2  TGTGGGGCCGCAGCCAGAACAATGGAATTC  780