BAC Information

Click to search

BAC

Clone NameB6Ng01-174I21
Chromosome5 (Build37)
Map Location 91,994,715 - 92,177,496
singlet/doubletdoublet
Overlap gene9130213B05Rik, EG665860
Upstream geneLOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
Downstream geneLOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174I21.bB6Ng01-174I21.g
ACCGA002605GA002606
length8061,062
definitionB6Ng01-174I21.b B6Ng01-174I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,176,759 - 92,177,496)(91,994,715 - 91,995,760)
sequence
gaattcttgctctctctagcttggtgtgtcacaggaatggtgtgtgtgcg
tgtgcgtgtgcgtgtgcgtgtgcgtgcatgtgcgtgtgcgtgtgtgtgtg
tgtgtgtgtgtgtgttggcacttgtaaagatcccagagcatggggagctc
agcacatccagactaaccacaggactagagagtcattcccctgcccgtgt
atcttattaccatatcactagcctaggaaaacccaaaggcaataggagta
ctaaaagaccagaggaaactttagcctctgacacctacagcaacagcaaa
cagtaaacataacttagcccctagacgggcaagcaaaatatcacactaaa
gctctgcgtactctgtgtagttccattagcccaatacatgtctggcttcc
aaccaaaaattccatactaaaggtgaaagtaaatttagcatttcattaaa
tgaatttagtatttcatacgaaaaggtaaaaacaaatgaaaaataatcaa
taaacaattctcccacagttacaaatatccaccctctagttccatacaac
ttgaagaggcagagcaagcgtcagaataggacagctgtggctgagacttt
ggaaaagcccaggatgagcttaaatatggctgaaatgtttaggattccaa
acgaaaaggtggccaaaacggcaagaacagatgggtaaaaaagtgtcata
ttgctatcagcagggagaatcggcaaaattgggtctcttcggattttccc
tagaattagaacgtttatatgtatgtgtgtgtgtgttttaaagcttattt
ttgaat
gaattccttgaggtcacagtcctgatagcgatggtgtctccggggattgt
gcaaggatgagaaagaatatggaatgaatgtcctatctctgagcaggaca
gagatgaaaacataggactccctgagtggatcaaggctggctgcgctctg
tggacaaccagaggcagagagatccatcactcaagtatctgtaaggccta
gttctgcagttgaggagtccctgcttttcggattaagcattgggatggtt
taattttgcatttaacaatgtaaaaaaaaaaaactatcagtgagaatagt
ttcccattcaactatatttgatttagaaacttctttgtgttgcctccata
atttcccaattaagccctgagctggaggtaacttcagaaagaaacacaaa
tccaagttttaaacgtttccaaacactttaccttttacatactcacagat
gaacctggatggtcttagaaaatcagccactgtgagtcactctccaatag
cactgtaatccctgacattctgtgaagagcttctcggcgtccagaacatc
ccgagctttcaaggacttgtcatttatataacatctttgtaaaaagcttt
ccagttatgacatagcatagtactccaccccctcctcccttggtctgcag
agaccccaagaaagcagcaaagcctccatccaaaaaataactacaccccc
ccctggtttctttcatttaaaatgtcattaagtccttgacagtgtaacct
agatgatttcctggatgcagacagggacacaaaaatgaaaaccaacaact
tggggacaaggactcacagacaactcaaggtggttgtgcaggggctacaa
gcgtgagttttcaacagaacgacagttgaaattattgactcttgccgcat
attcatcagccatattgaagtttagttcatttttgttatttacagataat
aagaccatcattgccctgctatgtgactgttaccttgaggaagactcaaa
caattgaataacttcattcccagatagagtcctggccaacgctcctaggc
aacttaagtcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_92176759_92177496
seq2: B6Ng01-174I21.b_33_773 (reverse)

seq1  CGAAGAGACCCAATTTTGCCGATTCTCCCTGCTGATAGCAATATGACAC-  49
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CGAAGAGACCCAATTTTGCCGATTCTCCCTGCTGATAGCAATATGACACT  50

seq1  TTTTTACCCATCTGTTCTTGCCG-TTTGGCCACCTTTTCGTTTGGAATCC  98
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTTACCCATCTGTTCTTGCCGTTTTGGCCACCTTTTCGTTTGGAATCC  100

seq1  T-AACATTTCAGCCATATTTAAGCTCATCCTGGGCTTTTCCAAAGTCTCA  147
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTCAGCCATATTTAAGCTCATCCTGGGCTTTTCCAAAGTCTCA  150

seq1  GCCACAGCTGTCCTATTCTGACGCTTGCTCTGCCTCTTCAAGTTGTATGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCTGTCCTATTCTGACGCTTGCTCTGCCTCTTCAAGTTGTATGG  200

seq1  AACTAGAGGGTGGATATTTGTAACTGTGGGAGAATTGTTTATTGATTATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGGGTGGATATTTGTAACTGTGGGAGAATTGTTTATTGATTATT  250

seq1  TTTCATTTGTTTTTACCTTTTCGTATGAAATACTAAATTCATTTAATGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTGTTTTTACCTTTTCGTATGAAATACTAAATTCATTTAATGAA  300

seq1  ATGCTAAATTTACTTTCACCTTTAGTATGGAATTTTTGGTTGGAAGCCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAATTTACTTTCACCTTTAGTATGGAATTTTTGGTTGGAAGCCAG  350

seq1  ACATGTATTGGGCTAATGGAACTACACAGAGTACGCAGAGCTTTAGTGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATTGGGCTAATGGAACTACACAGAGTACGCAGAGCTTTAGTGTG  400

seq1  ATATTTTGCTTGCCCGTCTAGGGGCTAAGTTATGTTTACTGTTTGCTGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGCTTGCCCGTCTAGGGGCTAAGTTATGTTTACTGTTTGCTGTT  450

seq1  GCTGTAGGTGTCAGAGGCTAAAGTTTCCTCTGGTCTTTTAGTACTCCTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGGTGTCAGAGGCTAAAGTTTCCTCTGGTCTTTTAGTACTCCTAT  500

seq1  TGCCTTTGGGTTTTCCTAGGCTAGTGATATGGTAATAAGATACACGGGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGGGTTTTCCTAGGCTAGTGATATGGTAATAAGATACACGGGCA  550

seq1  GGGGAATGACTCTCTAGTCCTGTGGTTAGTCTGGATGTGCTGAGCTCCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGACTCTCTAGTCCTGTGGTTAGTCTGGATGTGCTGAGCTCCCC  600

seq1  ATGCTCTGGGATCTTTACAAGTGCCAACACACACACACACACACACACAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGGGATCTTTACAAGTGCCAACACACACACACACACACACACAC  650

seq1  ACGCACACGCACATGCACGCACACGCACACGCACACGCACACGCACACAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACACGCACATGCACGCACACGCACACGCACACGCACACGCACACAC  700

seq1  ACCATTCCTGTGACACACCAAGCTAGAGAGAGCAAGAATTC  738
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCCTGTGACACACCAAGCTAGAGAGAGCAAGAATTC  741

seq1: chr5_91994715_91995760
seq2: B6Ng01-174I21.g_69_1130

seq1  GAATTCCTTGAGGTCACAGTCCTGATAGCGATGGTGTCTCCGGGGATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAGGTCACAGTCCTGATAGCGATGGTGTCTCCGGGGATTGT  50

seq1  GCAAGGATGAGAAAGAATATGGAATGAATGTCCTATCTCTGAGCAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGATGAGAAAGAATATGGAATGAATGTCCTATCTCTGAGCAGGACA  100

seq1  GAGATGAAAACATAGGACTCCCTGAGTGGATCAAGGCTGGCTGCGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAAAACATAGGACTCCCTGAGTGGATCAAGGCTGGCTGCGCTCTG  150

seq1  TGGACAACCAGAGGCAGAGAGATCCATCACTCAAGTATCTGTAAGGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAACCAGAGGCAGAGAGATCCATCACTCAAGTATCTGTAAGGCCTA  200

seq1  GTTCTGCAGTTGAGGAGTCCCTGCTTTTCGGATTAAGCATTGGGATGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCAGTTGAGGAGTCCCTGCTTTTCGGATTAAGCATTGGGATGGTT  250

seq1  TAATTTTGCATTTAACAATGTAAAAAAAAAAAACTATCAGTGAGAATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGCATTTAACAATGTAAAAAAAAAAAACTATCAGTGAGAATAGT  300

seq1  TTCCCATTCAACTATATTTGATTTAGAAACTTCTTTGTGTTGCCTCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTCAACTATATTTGATTTAGAAACTTCTTTGTGTTGCCTCCATA  350

seq1  ATTTCCCAATTAAGCCCTGAGCTGGAGGTAACTTCAGAAAGAAACACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCAATTAAGCCCTGAGCTGGAGGTAACTTCAGAAAGAAACACAAA  400

seq1  TCCAAGTTTTAAACGTTTCCAAACACTTTACCTTTTACATACTCACAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTTTAAACGTTTCCAAACACTTTACCTTTTACATACTCACAGAT  450

seq1  GAACCTGGATGGTCTTAGAAAATCAGCCACTGTGAGTCACTCTCCAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGATGGTCTTAGAAAATCAGCCACTGTGAGTCACTCTCCAATAG  500

seq1  CACTGTAATCCCTGACATTCTGTGAAGAGCTTCTCGGCGTCCAGAACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAATCCCTGACATTCTGTGAAGAGCTTCTCGGCGTCCAGAACATC  550

seq1  CCGAGCTTTCAAGGACTTGTCATTTATATAACATCTTTGTAAAAAGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCTTTCAAGGACTTGTCATTTATATAACATCTTTGTAAAAAGCTTT  600

seq1  CCAGTTATGACATAGCATAGTACTCCACCCCCTCCTCCCTTGGTCTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATGACATAGCATAGTACTCCACCCCCTCCTCCCTTGGTCTGCAG  650

seq1  AGACCCCAAGAAAGCAGCAAAGCCTCCATCCAAAAAATAACTACACCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCAAGAAAGCAGCAAAGCCTCCATCCAAAAAATAACTACACCCCC  700

seq1  CCCTGGTTTCTTTCATTTAAAATGTCATTAAGTCCTTGACAGTGTAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTTCTTTCATTTAAAATGTCATTAAGTCCTTGACAGTGTAACCT  750

seq1  AGATGATTTCCTGGATGCAGACAGGGACAC-AAAATGAAAACCAACAACT  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGATGATTTCCTGGATGCAGACAGGGACACAAAAATGAAAACCAACAACT  800

seq1  TGGGGACAAGGACTCACAGACAACTCAAGGTGGTTGTGCAGGGGCTACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACAAGGACTCACAGACAACTCAAGGTGGTTGTGCAGGGGCTACAA  850

seq1  GCGTGAG-TTTCAACAGAACGACAGTTGAAATTATTGACTC-TGCCGCAT  897
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  GCGTGAGTTTTCAACAGAACGACAGTTGAAATTATTGACTCTTGCCGCAT  900

seq1  A-TCATCAGCCATA-TGAAGTTTAGTTCATTTTTGTTATTTACAGATAAT  945
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGCCATATTGAAGTTTAGTTCATTTTTGTTATTTACAGATAAT  950

seq1  AAGACCATCAT--GCCTGCTATGTGACTG-TACC-TGAGG-AGACTCAAA  990
      |||||||||||   ||||||||||||||| |||| ||||| |||||||||
seq2  AAGACCATCATTGCCCTGCTATGTGACTGTTACCTTGAGGAAGACTCAAA  1000

seq1  CAAATG-ATAAC-TCA-TCCCAGATAGAGTCCTGG-CAACGCTCC-AAGC  1035
      ||| || ||||| ||| |||||||||||||||||| ||||||||| | ||
seq2  CAATTGAATAACTTCATTCCCAGATAGAGTCCTGGCCAACGCTCCTAGGC  1050

seq1  AAC-TAAGTCCA  1046
      ||| ||||||||
seq2  AACTTAAGTCCA  1062