BAC Information

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BAC

Clone NameB6Ng01-176P12
Chromosome5 (Build37)
Map Location 79,703,442 - 79,811,497
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176P12.bB6Ng01-176P12.g
ACCGA004365GA004366
length7701,042
definitionB6Ng01-176P12.b B6Ng01-176P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,703,442 - 79,704,209)(79,810,498 - 79,811,497)
sequence
gaattcaatattcaatattttcctacaaaaataatttataatccttgtcc
attgcagatctatacagagtatatgtataatgggaaactcctagataatc
atcagctaaggaattcatagtaaacatgtggtacatataaacacaatgtc
attaggctattaaagaagtaaaatcatggaagtggcaagccaatgagttg
aactagaaaaaaaaatcatacttagtgggaataccttgacccagaaataa
agtgtcatgtgttctttctcatatgtggatcctagtttggcatctttaga
tatatgtttttaagttagagtacctattgaatccaagaaattagaaggaa
gccagtggggatcttaagagtgtcagaagcaccgaatttgagtgacataa
gaggggaatgttgaataattgctgtgaaggttgaagtagggcaggatggc
agtacagagataagaagaaagatatgtaagtaagaatacttgaaaagaac
attgtgtgggtaagcattttggaatgcagtataagtgggttgctaagggt
aactacgaaaattaattgtatagtggttaaaactgagaataattttaaaa
taatatattaaaagcataattccatttaacatatatataacatatagatt
atatttatagatgtgattaccatgtaagatatgttgatatttatacaatg
taatatacatacatatatatatatatatatgaatacggttttttatacca
cacatatatatgttataatt

gaattcttggtttagatctatatttttttttattgagttgtaataaatct
cttggtagatctccccacaaagataagacagaaagtcacattccagtact
aaaaatagagacaagactaacaccgtcagtaaagaccaagaaaatgcacg
tgtggttgtccacatcatatgtccaagtctttctccagtctgtcctcgga
aaaaatggtttgattatggttttccccagtaaaaccacatcatttcaatg
aatcatgactccatttttagacagctttataaaatttgaattgctaaata
gttttatttgatcagtgtaagcttctaattattttgaaattcagtgagtt
ttacaaccatatgttgaaaaaccatatgaaactgtttttttttcactatt
ttttccaggaagagtttcagatttttatttataaattcaagccttccatt
aattttttaaagtatgtgaaattatttcttttagaaatatgtcgaattat
aacttttagaagtgatttaaattctcagaacattgaataataattcgaaa
gggcttttatttttttcccctggtccacatgtgtataacccttcctaata
tcaatttattcccaaagagtagcatgtgagagacaatacatatacctgaa
tagatacactgctacctctagaagtccagagattaactttaagcctacat
ttgttgttagaactactgggatttaaagtaatttaatgacatatgttaac
atagagagtatccaaaaactactgatgtactaaaatacatattaattctg
gttttttttttattgattcattgtatttttccctgtagtctgtaaaaaca
acaaatttttagatattgacatatttcatctgttttagaatatcagagag
tttaagcaaaatgataaaaaataaattcgattattttgttgatttatttg
ggaattatgctataaaatgtccagcttttaaaagccagaagtgtcttgca
tttttctgaaatgtactatttacttataactgacatctcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79703442_79704209
seq2: B6Ng01-176P12.b_47_816

seq1  GAATTCAATATTCAATATTTTCCTACAAAAATAATTTATAATCCTTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTCAATATTTTCCTACAAAAATAATTTATAATCCTTGTCC  50

seq1  ATTGCAGATCTATACAGAGTATATGTATAATGGGAAACTCCTAGATAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGATCTATACAGAGTATATGTATAATGGGAAACTCCTAGATAATC  100

seq1  ATCAGCTAAGGAATTCATAGTAAACATGTGGTACATATAAACACAATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTAAGGAATTCATAGTAAACATGTGGTACATATAAACACAATGTC  150

seq1  ATTAGGCTATTAAAGAAGTAAAATCATGGAAGTGGCAAGCCAATGAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCTATTAAAGAAGTAAAATCATGGAAGTGGCAAGCCAATGAGTTG  200

seq1  AACTAGAAAAAAAAATCATACTTAGTGGGAATACCTTGACCCAGAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAAAAAAAATCATACTTAGTGGGAATACCTTGACCCAGAAATAA  250

seq1  AGTGTCATGTGTTCTTTCTCATATGTGGATCCTAGTTTGGCATCTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCATGTGTTCTTTCTCATATGTGGATCCTAGTTTGGCATCTTTAGA  300

seq1  TATATGTTTTTAAGTTAGAGTACCTATTGAATCCAAGAAATTAGAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTTTTAAGTTAGAGTACCTATTGAATCCAAGAAATTAGAAGGAA  350

seq1  GCCAGTGGGGATCTTAAGAGTGTCAGAAGCACCGAATTTGAGTGACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGGGGATCTTAAGAGTGTCAGAAGCACCGAATTTGAGTGACATAA  400

seq1  GAGGGGAATGTTGAATAATTGCTGTGAAGGTTGAAGTAGGGCAGGATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAATGTTGAATAATTGCTGTGAAGGTTGAAGTAGGGCAGGATGGC  450

seq1  AGTACAGAGATAAGAAGAAAGATATGTAAGTAAGAATACTTGAAAAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGAGATAAGAAGAAAGATATGTAAGTAAGAATACTTGAAAAGAAC  500

seq1  ATTGTGTGGGTAAGCATTTTGGAATGCAGTATAAGTGGGTTGCTAAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGGGTAAGCATTTTGGAATGCAGTATAAGTGGGTTGCTAAGGGT  550

seq1  AACTACGAAAATTAATTGTATAGTGGTTAAAACTGAGAATAATTTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACGAAAATTAATTGTATAGTGGTTAAAACTGAGAATAATTTTAAAA  600

seq1  TAATATATTAAAAGCATAATTCCATTTAACATATATATAACATATAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTAAAAGCATAATTCCATTTAACATATATATAACATATAGATT  650

seq1  ATATTTATAGATGTGATTACCATGTAAGATATGTTGATATTTATACAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATAGATGTGATTACCATGTAAGATATGTTGATATTTATACAATG  700

seq1  TAATATACATACATATATATATATATATATGAATACGG-TTTTTATACCA  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAATATACATACATATATATATATATATATGAATACGGTTTTTTATACCA  750

seq1  CACATATATATG-TATAATT  768
      |||||||||||| |||||||
seq2  CACATATATATGTTATAATT  770


seq1: chr5_79810498_79811497
seq2: B6Ng01-176P12.g_69_1070 (reverse)

seq1  AATGCAAGAACACTTCTGGGCTTTTAAAAGCTGGACATTTTATAGCAT-A  49
      |||||||| |||||||| |||||||||||||||||||||||||||||| |
seq2  AATGCAAG-ACACTTCT-GGCTTTTAAAAGCTGGACATTTTATAGCATAA  48

seq1  TTTCCAAATAAATCAACAAA--TATCGAATTTATTTTTTATCATTTTGCT  97
      || |||||||||||||||||   |||||||||||||||||||||||||||
seq2  TTCCCAAATAAATCAACAAAATAATCGAATTTATTTTTTATCATTTTGCT  98

seq1  T-AACTCTCTGATATTCTAAAACAGATGAAATATGTCAATATCTAAAAAT  146
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCTCTGATATTCTAAAACAGATGAAATATGTCAATATCTAAAAAT  148

seq1  TTGTTGTTTTTACAGACTACAGGGAAAAATACAATGAATCAATAAAAAAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTTTTACAGACTACAGGGAAAAATACAATGAATCAATAAAAAAA  198

seq1  AAACCAGAATTAATATGTATTTTAGTACATCAGTAGTTTTTGGATACTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGAATTAATATGTATTTTAGTACATCAGTAGTTTTTGGATACTCT  248

seq1  CTATGTTAACATATGTCATTAAATTACTTTAAATCCCAGTAGTTCTAACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTAACATATGTCATTAAATTACTTTAAATCCCAGTAGTTCTAACA  298

seq1  ACAAATGTAGGCTTAAAGTTAATCTCTGGACTTCTAGAGGTAGCAGTGTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTAGGCTTAAAGTTAATCTCTGGACTTCTAGAGGTAGCAGTGTA  348

seq1  TCTATTCAGGTATATGTATTGTCTCTCACATGCTACTCTTTGGGAATAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCAGGTATATGTATTGTCTCTCACATGCTACTCTTTGGGAATAAA  398

seq1  TTGATATTAGGAAGGGTTATACACATGTGGACCAGGGGAAAAAAATAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTAGGAAGGGTTATACACATGTGGACCAGGGGAAAAAAATAAAA  448

seq1  GCCCTTTCGAATTATTATTCAATGTTCTGAGAATTTAAATCACTTCTAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCGAATTATTATTCAATGTTCTGAGAATTTAAATCACTTCTAAA  498

seq1  AGTTATAATTCGACATATTTCTAAAAGAAATAATTTCACATACTTTAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAATTCGACATATTTCTAAAAGAAATAATTTCACATACTTTAAAA  548

seq1  AATTAATGGAAGGCTTGAATTTATAAATAAAAATCTGAAACTCTTCCTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGGAAGGCTTGAATTTATAAATAAAAATCTGAAACTCTTCCTGG  598

seq1  AAAAAATAGTGAAAAAAAAACAGTTTCATATGGTTTTTCAACATATGGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAGTGAAAAAAAAACAGTTTCATATGGTTTTTCAACATATGGTT  648

seq1  GTAAAACTCACTGAATTTCAAAATAATTAGAAGCTTACACTGATCAAATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTCACTGAATTTCAAAATAATTAGAAGCTTACACTGATCAAATA  698

seq1  AAACTATTTAGCAATTCAAATTTTATAAAGCTGTCTAAAAATGGAGTCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTTAGCAATTCAAATTTTATAAAGCTGTCTAAAAATGGAGTCAT  748

seq1  GATTCATTGAAATGATGTGGTTTTACTGGGGAAAACCATAATCAAACCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTGAAATGATGTGGTTTTACTGGGGAAAACCATAATCAAACCAT  798

seq1  TTTTTCCGAGGACAGACTGGAGAAAGACTTGGACATATGATGTGGACAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCGAGGACAGACTGGAGAAAGACTTGGACATATGATGTGGACAAC  848

seq1  CACACGTGCATTTTCTTGGTCTTTACTGACGGTGTTAGTCTTGTCTCTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTGCATTTTCTTGGTCTTTACTGACGGTGTTAGTCTTGTCTCTAT  898

seq1  TTTTAGTACTGGAATGTGACTTTCTGTCTTATCTTTGTGGGGAGATCTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTACTGGAATGTGACTTTCTGTCTTATCTTTGTGGGGAGATCTAC  948

seq1  CAAGAGATTTATTACAACTCAATAAAAAAAAATATAGATCTAAACCAAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGATTTATTACAACTCAATAAAAAAAAATATAGATCTAAACCAAGA  998

seq1  ATTC  1000
      ||||
seq2  ATTC  1002


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