BAC Information

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BAC

Clone NameB6Ng01-177K01
Chromosome5 (Build37)
Map Location 90,444,019 - 90,547,092
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc4a4, Gc, LOC622870, Npffr2, LOC631105, Adamts3
Downstream geneEG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177K01.bB6Ng01-177K01.g
ACCGA004844GA004845
length7931,044
definitionB6Ng01-177K01.b B6Ng01-177K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,444,019 - 90,444,681)(90,546,044 - 90,547,092)
sequence
gaattcattggtggcatacctcaccttaatgtcaccatattctctgcaaa
attaacactcccacaaaagtaagtgatttcacgagccactgagcaaatga
ccatttaggaataaatgagatatttatgataattatgtgtgtgctcacct
ttcatgcataacaaagttgtaatagatatttttctgctggcaaaataaaa
cagcactaccaagaaagaattcatttaagcttacaattctagagtgttag
agtccaaaatggctggaacagcatggtagcaagtagaagcttggcaccat
gaagagagcctaggagaggctattggtgaggcctagttacagcagaagat
agcagtgttttggagatgccagtactgtgaggtgactgccaagagcagca
gcagcagtggagtacaggcatctggagcctagaagacaaggtatgtgcta
caaagggcagggctggagaagtgacccaaacccttgaaggagcccagaat
atcgtgagtggataccagacattaaatggttggagtctgattttgctttt
gattgtgactgtgcccggatagttttccttcttgaaggaagaaagtattt
tagtggagcccacagttaagagatttttaattgtaaaaaaagattttgga
ttttaaaagagattggatgttttaaagggattgaaattttagtatgtaag
aatttgcaaaaactgtgattttaaaagttatttagatcttgggatggata
agaaagtaagggttgaggcttagtagtgatgtgtttgtgtgtc
gaattcattaaatacttagtaaaactttgcagatttggggacagtagata
caaccagcctgaggtcctggcaagtcctagactctaggcacagttcaggg
gctgtcaggggcatggctgacatctgctgaaagcctgaggcacacatgtg
agaggtaagagtcagtctatgtcaggctaatcactgttttcctttgtatt
ctctaaacctttgtctcctccctacaattcaaaaccctgactccatatcc
tgttaattaagatctctgattcagagagcataagccactgtaagtaccac
agcgacctgacctttgagctttactaatgaagctagaaaatgctgtgcta
ggggaaacatggtgaacaactcacttgacacagaaaccctgtggttttgt
gttgagcacttactgtagagaatctagggttgaggaaaggagtcagaagg
caatggcacaaaagcaagatggcactctggagacatctggaaggcagcta
cgggatttgcttgtgggaggcatgtggggctaggcaagggagatggccag
tgcttaactagggatatgggtgggttctgggctgtactatggtgagagat
ggccaactagttttattaaagatctgacattgtactactgttagttaggg
tagtcagggcagcaagtggtttcttcacactgtgtttaatagagaaccta
ctaatgtgtctcagttcacacatagtgtgccttctgggacaccaaagtga
ggaagaaatacagagggagcttgaggggctggtagtaatgcttctgcgac
ctgtcactcacagtctaaccaggcagtggtggagagaggcccattcatta
gagggtgatgactgcatatctaatgaaaaaggaagaggtggaaaacatga
tttcccgaattaaagttgcacatgaactcaagaagaatgaagaccaaagt
gttgaacaccttgcccttctagagttgggaacaacacccatggaaggaga
tactaagacaagttggaatctgtaaccaaaggatggaccatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90444019_90444681
seq2: B6Ng01-177K01.b_44_706

seq1  GAATTCATTGGTGGCATACCTCACCTTAATGTCACCATATTCTCTGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGTGGCATACCTCACCTTAATGTCACCATATTCTCTGCAAA  50

seq1  ATTAACACTCCCACAAAAGTAAGTGATTTCACGAGCCACTGAGCAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACACTCCCACAAAAGTAAGTGATTTCACGAGCCACTGAGCAAATGA  100

seq1  CCATTTAGGAATAAATGAGATATTTATGATAATTATGTGTGTGCTCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAGGAATAAATGAGATATTTATGATAATTATGTGTGTGCTCACCT  150

seq1  TTCATGCATAACAAAGTTGTAATAGATATTTTTCTGCTGGCAAAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCATAACAAAGTTGTAATAGATATTTTTCTGCTGGCAAAATAAAA  200

seq1  CAGCACTACCAAGAAAGAATTCATTTAAGCTTACAATTCTAGAGTGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTACCAAGAAAGAATTCATTTAAGCTTACAATTCTAGAGTGTTAG  250

seq1  AGTCCAAAATGGCTGGAACAGCATGGTAGCAAGTAGAAGCTTGGCACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAAATGGCTGGAACAGCATGGTAGCAAGTAGAAGCTTGGCACCAT  300

seq1  GAAGAGAGCCTAGGAGAGGCTATTGGTGAGGCCTAGTTACAGCAGAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGCCTAGGAGAGGCTATTGGTGAGGCCTAGTTACAGCAGAAGAT  350

seq1  AGCAGTGTTTTGGAGATGCCAGTACTGTGAGGTGACTGCCAAGAGCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTTTTGGAGATGCCAGTACTGTGAGGTGACTGCCAAGAGCAGCA  400

seq1  GCAGCAGTGGAGTACAGGCATCTGGAGCCTAGAAGACAAGGTATGTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTGGAGTACAGGCATCTGGAGCCTAGAAGACAAGGTATGTGCTA  450

seq1  CAAAGGGCAGGGCTGGAGAAGTGACCCAAACCCTTGAAGGAGCCCAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCAGGGCTGGAGAAGTGACCCAAACCCTTGAAGGAGCCCAGAAT  500

seq1  ATCGTGAGTGGATACCAGACATTAAATGGTTGGAGTCTGATTTTGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGAGTGGATACCAGACATTAAATGGTTGGAGTCTGATTTTGCTTTT  550

seq1  GATTGTGACTGTGCCCGGATAGTTTTCCTTCTTGAAGGAAGAAAGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGACTGTGCCCGGATAGTTTTCCTTCTTGAAGGAAGAAAGTATTT  600

seq1  TAGTGGAGCCCACAGTTAAGAGATTTTTAATTGTAAAAAAAGATTTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGCCCACAGTTAAGAGATTTTTAATTGTAAAAAAAGATTTTGGA  650

seq1  TTTTAAAAGAGAT  663
      |||||||||||||
seq2  TTTTAAAAGAGAT  663

seq1: chr5_90546044_90547092
seq2: B6Ng01-177K01.g_61_1104 (reverse)

seq1  TAGATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAACTCC  50
      ||||||||||||||||| ||  ||| | | ||| ||||||  ||| ||||
seq2  TAGATGGTCCATCCTTTGGTTACAGATTCCAAC-TTGTCTTAGTATCTCC  49

seq1  TTCCATGGGTGTTTTGTCCCCAACTCTAAGAAGGGGCAAAGTG-TCCACA  99
      |||||||||||  |||| ||||||||| |||| |||||| ||| || |||
seq2  TTCCATGGGTG--TTGTTCCCAACTCT-AGAA-GGGCAAGGTGTTCAACA  95

seq1  CTTTGGTCTTCATTCTTCTTGAGTTTCATGTGCCAAACTTTAATTCGGG-  148
      ||||||||||||||||||||||| |||||||||  |||||||||||||| 
seq2  CTTTGGTCTTCATTCTTCTTGAG-TTCATGTGC--AACTTTAATTCGGGA  142

seq1  AATCATGTTTTCCACCTCTTCCCTTTTCATTAGATATGCAGTCATCACCC  198
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATCATGTTTTCCACCTCTTCCTTTTTCATTAGATATGCAGTCATCACCC  192

seq1  TCTAATGAATGGGCCTCTCT-CACCACTGCCTGGTTAGACTGTGAGTGAC  247
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTAATGAATGGGCCTCTCTCCACCACTGCCTGGTTAGACTGTGAGTGAC  242

seq1  AGGTCGCAGAAGCATTACTACCAGCCCCTCAAGCTCCCTCTGTATTTCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGCAGAAGCATTACTACCAGCCCCTCAAGCTCCCTCTGTATTTCTT  292

seq1  CCTCACTTTGGTGTCCCAGAAGGCACACTATGTGTGAACTGAGACACATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTTGGTGTCCCAGAAGGCACACTATGTGTGAACTGAGACACATT  342

seq1  AGTAGGTTCTCTATTAAACACAGTGTGAAGAAACCACTTGCTGCCCTGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTTCTCTATTAAACACAGTGTGAAGAAACCACTTGCTGCCCTGAC  392

seq1  TACCCTAACTAACAGTAGTACAATGTCAGATCTTTAATAAAACTAGTTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAACTAACAGTAGTACAATGTCAGATCTTTAATAAAACTAGTTGG  442

seq1  CCATCTCTCACCATAGTACAGCCCAGAACCCACCCATATCCCTAGTTAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCACCATAGTACAGCCCAGAACCCACCCATATCCCTAGTTAAG  492

seq1  CACTGGCCATCTCCCTTGCCTAGCCCCACATGCCTCCCACAAGCAAATCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCCATCTCCCTTGCCTAGCCCCACATGCCTCCCACAAGCAAATCC  542

seq1  CGTAGCTGCCTTCCAGATGTCTCCAGAGTGCCATCTTGCTTTTGTGCCAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGCTGCCTTCCAGATGTCTCCAGAGTGCCATCTTGCTTTTGTGCCAT  592

seq1  TGCCTTCTGACTCCTTTCCTCAACCCTAGATTCTCTACAGTAAGTGCTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTGACTCCTTTCCTCAACCCTAGATTCTCTACAGTAAGTGCTCA  642

seq1  ACACAAAACCACAGGGTTTCTGTGTCAAGTGAGTTGTTCACCATGTTTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACCACAGGGTTTCTGTGTCAAGTGAGTTGTTCACCATGTTTCC  692

seq1  CCTAGCACAGCATTTTCTAGCTTCATTAGTAAAGCTCAAAGGTCAGGTCG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACAGCATTTTCTAGCTTCATTAGTAAAGCTCAAAGGTCAGGTCG  742

seq1  CTGTGGTACTTACAGTGGCTTATGCTCTCTGAATCAGAGATCTTAATTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTACTTACAGTGGCTTATGCTCTCTGAATCAGAGATCTTAATTAA  792

seq1  CAGGATATGGAGTCAGGGTTTTGAATTGTAGGGAGGAGACAAAGGTTTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATGGAGTCAGGGTTTTGAATTGTAGGGAGGAGACAAAGGTTTAG  842

seq1  AGAATACAAAGGAAAACAGTGATTAGCCTGACATAGACTGACTCTTACCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAAAGGAAAACAGTGATTAGCCTGACATAGACTGACTCTTACCT  892

seq1  CTCACATGTGTGCCTCAGGCTTTCAGCAGATGTCAGCCATGCCCCTGACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGTGTGCCTCAGGCTTTCAGCAGATGTCAGCCATGCCCCTGACA  942

seq1  GCCCCTGAACTGTGCCTAGAGTCTAGGACTTGCCAGGACCTCAGGCTGGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGAACTGTGCCTAGAGTCTAGGACTTGCCAGGACCTCAGGCTGGT  992

seq1  TGTATCTACTGTCCCCAAATCTGCAAAGTTTTACTAAGTATTTAATGAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTACTGTCCCCAAATCTGCAAAGTTTTACTAAGTATTTAATGAAT  1042

seq1  TC  1049
      ||
seq2  TC  1044