BAC Information

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BAC

Clone NameB6Ng01-178J18
Chromosome5 (Build37)
Map Location 57,058,853 - 57,060,067
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178J18.bB6Ng01-178J18.g
ACCGA005551GA005552
length1,1901,148
definitionB6Ng01-178J18.b B6Ng01-178J18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattcagttgaactgtattcagtcactgatttgtgttttaatgt
ccaaggtgctcctttgtaatggttgtgatttctggagatatcagagacca
catcactgacacgtaaacatctctttgtaatatttgctaaattatggtaa
aacaataaaatcttacacaaagtattccagtatatttttaatttgatcaa
tatgctgatgtcttcattttgggaagaactctaacagaagattttttttg
attcagtggttctacctttctcaaaagaaccctttagattttagtcagcg
agagatttataaactaggttatgctacaaatgcatatcacttgaaaatta
atgaaatgttgaatatattttaagaattattattttatactaatattttg
ctactttttatttcatattaattgtattcacttgtcaccatttaaactag
atttcttttcaaagtagagagtctgggtctaggtccattgctgtaaaaca
acagtataaccaaggcgattcttataaaggacaacatttaattggggctg
gcttataggttcaaaggttcagtccattatcatcatcctgacaagaatca
tggcaacattcaggcaaacaaggtactagagaagggccaagtgttctgca
tcatgatccaaagtcagtgagtagaagactctgaatcctctggcacctag
gagcagcatctcaaatcccagccctacagtgacacacatcctccaaggca
catttcttaatactgccactccctgcgacaaccatattcaaaaccccaca
gcctgtattgtttactggcaaatatgaagagatctagttttatttactat
catgtggtttccagcaggaaatgtttactctttaaatggatacctcagtt
gatgatcaacacaaatagaactcagttgttgtcttagtcagggtttctat
tcctgcacaaacatcatgaccaagaagcaagttggatctcatagaggcat
ttcctcaactgaagctcctttcttcttgtgataactcagctgtgtcaagt
gacacaaactagcagtacatgaccctgtcacctgaccaacaacacatcac
tagtaggctcacccttacttctatcattcccagtctaatacttgaaggtc
ccaggtcttacaattcctaagttcacctctttaaatatcc

gaattctgttggcttcttgaatgttcatggggatctctttctttagggaa
gttttcgtctataattttgttgaagacatttactggccctttaagttgaa
aatcttcattctcatctatatttattatccttaggtttggtcttctcatt
gtgtcctggatttcctggatattttgggttagggtatttttgcattttgc
attttctttgattgttttgtctatgttctccatggaatcttctgcaaccc
gagattctcttttctacctcttgtattctgttgctgatgcttgcatctat
ggttcctgacttctttcataggatttttatctccagagttgtctcccttt
gggttttctttattgtttctacttccatttttagatcttggatggttttg
ctcaattccatcacctgtttggttgtgttttcctgtaaatctttaaagtg
tttttgtgttccctctttaaggacttctacctgtttagtttttgtgtaat
tctttaagggatatttgtgttttctctttaattacttctaagtttttttt
cagtgttatcctgtatttccttaagagaattattaatgcccttcttaaaa
tgctctaccagcattatgagatatgattttaaacctgaatcttgcttttc
cggtgtgctggtgtatctaggacttgttgtggtaggagttcagggttctg
atgatgctgagtggtctcggtttctgttagtaagattcttatgtttgcct
ttcaccatctggaaatctctggtgttagatgtttctagctgtctctgctg
gagcttgttcctcctgtgattcttttagcctctgtcaggactcctgagag
tccaactctctactgagtcacagtggtcaaaacattctctgcaggcaatc
ttctcctctggcagggaaaggtgtcaagaggtcttggtactcagttttgc
ctcctggctgagatgaaggccagaagggactctatccaggagctatgttg
ctctgcagccttcttgctctcagtgcggactggtgtcatcgagtctggat
acaaagaatggagatcctcaccttagttccagggtcaagttctccctgag
gcctaattttttcctttcttgaattatcagaaacatccacgctacgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57058853_57060067
seq2: B6Ng01-178J18.b_44_1233

seq1  GAATTCAATTCAGTTGAACTGTATTCAGTCACTGATTTGTGTTTTAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCAGTTGAACTGTATTCAGTCACTGATTTGTGTTTTAATGT  50

seq1  CCAAGGTGCTCCTTTGTAATGGTTGTGATTTCTGGAGATATCAGAGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTGCTCCTTTGTAATGGTTGTGATTTCTGGAGATATCAGAGACCA  100

seq1  CATCACTGACACGTAAACATCTCTTTGTAATATTTGCTAAATTATGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGACACGTAAACATCTCTTTGTAATATTTGCTAAATTATGGTAA  150

seq1  AACAATAAAATCTTACACAAAGTATTCCAGTATATTTTTAATTTGATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAAATCTTACACAAAGTATTCCAGTATATTTTTAATTTGATCAA  200

seq1  TATGCTGATGTCTTCATTTTGGGAAGAACTCTAACAGAAGATTTTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGATGTCTTCATTTTGGGAAGAACTCTAACAGAAGATTTTTTTTG  250

seq1  ATTCAGTGGTTCTACCTTTCTCAAAAGAACCCTTTAGATTTTAGTCAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGGTTCTACCTTTCTCAAAAGAACCCTTTAGATTTTAGTCAGCG  300

seq1  AGAGATTTATAAACTAGGTTATGCTACAAATGCATATCACTTGAAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTATAAACTAGGTTATGCTACAAATGCATATCACTTGAAAATTA  350

seq1  ATGAAATGTTGAATATATTTTAAGAATTATTATTTTATACTAATATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGTTGAATATATTTTAAGAATTATTATTTTATACTAATATTTTG  400

seq1  CTACTTTTTATTTCATATTAATTGTATTCACTTGTCACCATTTAAACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTTATTTCATATTAATTGTATTCACTTGTCACCATTTAAACTAG  450

seq1  ATTTCTTTTCAAAGTAGAGAGTCTGGGTCTAGGTCCATTGCTGTAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTCAAAGTAGAGAGTCTGGGTCTAGGTCCATTGCTGTAAAACA  500

seq1  ACAGTATAACCAAGGCGATTCTTATAAAGGACAACATTTAATTGGGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATAACCAAGGCGATTCTTATAAAGGACAACATTTAATTGGGGCTG  550

seq1  GCTTATAGGTTCAAAGGTTCAGTCCATTATCATCATCCTGACAAGAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAGGTTCAAAGGTTCAGTCCATTATCATCATCCTGACAAGAATCA  600

seq1  TGGCAACATTCAGGCAAACAAGGTACTAGAGAAGGGCCAAGTGTTCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACATTCAGGCAAACAAGGTACTAGAGAAGGGCCAAGTGTTCTGCA  650

seq1  TCATGATCCAAAGTCAGTGAGTAGAAGACTCTGAATCCTCTGGCACCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCCAAAGTCAGTGAGTAGAAGACTCTGAATCCTCTGGCACCTAG  700

seq1  GAGCAGCATCTCAAATCCCAGCCCTACAGTGACACACATCCTCCAAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCATCTCAAATCCCAGCCCTACAGTGACACACATCCTCCAAGGCA  750

seq1  CATTTCTTAATACTGCCACTCCCTGCGACAACCATATTCAAAACCCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTAATACTGCCACTCCCTGCGACAACCATATTCAAAACCCCACA  800

seq1  GCCTGTATTGTTTACTGGCAAATATGAAGAGATCTAGTTTTATTTACTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTATTGTTTACTGGCAAATATGAAGAGATCTAGTTTTATTTACTAT  850

seq1  CATGTGGTTTCCAGCAGGAAATGTTTACTCTTTAAATGGATACCTCAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTTCCAGCAGGAAATGTTTACTCTTTAAATGGATACCTCAGTT  900

seq1  GATGATCAACACAAATAGAACTCAGTTGTTGTCTTAGTCAGGGTTTCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCAACACAAATAGAACTCAGTTGTTGTCTTAGTCAGGGTTTCTAT  950

seq1  TCCTGCACAAACATCATGACCAAGAAGCAAGTTGGATCTCATAGAGGCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACAAACATCATGACCAAGAAGCAAGTTGGATCTCATAGAGGCAT  1000

seq1  TTCCTCAACTGAAGCTCCTTTCT--CTGTGATAACTCCAGCTGTGTCAAG  1048
      |||||||||||||||||||||||   |||||||||| |||||||||||||
seq2  TTCCTCAACTGAAGCTCCTTTCTTCTTGTGATAACT-CAGCTGTGTCAAG  1049

seq1  TTGACACAAAACTAGCCAGTACAATTGACCCCTTGTCAACTTGACACACA  1098
       |||||| ||||||| |||||||  ||||||  |||| || |||| ||  
seq2  -TGACAC-AAACTAG-CAGTACA--TGACCC--TGTC-ACCTGAC-CAAC  1090

seq1  AACACATCACTAGTAAGCCTCAACCCTTACATTCCTATTCATCCCCAAGG  1148
      |||||||||||||| || ||| ||||||||  | ||| |||| ||||  |
seq2  AACACATCACTAGT-AGGCTC-ACCCTTAC--TTCTA-TCATTCCCA--G  1133

seq1  TCTAAATAACTTTAAAAGTCCCACAGTCTTTACATATTCTTAAAATTTCA  1198
      ||| ||||   || || ||||||  ||| ||||| |||| |  || ||| 
seq2  TCT-AATA--CTTGAAGGTCCCA-GGTC-TTACA-ATTCCT--AAGTTC-  1174

seq1  ACCTCTTTAAAATATCC  1215
      |||||||| ||||||||
seq2  ACCTCTTT-AAATATCC  1190


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