BAC Information

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BAC

Clone NameB6Ng01-178O04
Chromosome5 (Build37)
Map Location 14,958,647 - 14,959,807
singlet/doubletsinglet
Overlap geneSpeer8-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178O04.bB6Ng01-178O04.g
ACCGA005751GA005752
length1,1471,197
definitionB6Ng01-178O04.b B6Ng01-178O04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagctcctcctgaaccatgcctgccctggcactgccatgctcc
ttccttgatgataatggactaaacctctgaacctgtaggacaggcccaat
taaatggtctccttttaagagttgccacggtcatagtgtctgttacagca
gcaaaaccctaactaagacatattatatctgagcaaaaataaaatttttc
ttattctcaaagattattgcaaatttttacacgtaatgcaacaagacact
tgagcatattgctcaattattacattgaaaatatatagtgcttggtagtc
ttaaaggatattgataaaaagaaacagatatggattacatatagtataga
accatagttacatgattagaggtgagagaagttacttatgagagtgttaa
gcaccacttggccaataatgaaccattctttgaatatcctctaggtcctt
gctccttcagccatctctgtgacctgttaagtaccatttacatatcaact
agaaactgtttctcaagtctactttctctgaatgtctaattaacattaat
aagaaaaaatttgaaaatcaattatggcaagaggccagaaacatttcttt
cttcttttacaattaatttcatgcttattttgtaagaatatttattaagg
ttttgtaaaaaggttggattaagaatgaccacttgaagacaatttttttt
ctctcaatgaatgattttcattttactgctcatatttcaatatattcttt
aatctacaacatccacatttcattgtggggcaaagtagactgtgccacca
gacaggagaactggtaaggttgggtctctatctatgcccctgagctaaga
ctgtcccataacccttaaagaattagaagcagtcatgaatagtctcccaa
ccaaacaaatcccaggaacagatgggtttagtgcagaattctttttttta
ataggtattttctcgtttacattttcaatgctatcccaaaggtccccata
cccacccaccctatcccctacccacccactctcttttgaccctgtgttcc
actgtactggggcatataaagttataagtcaatggctctctttgcatgat
gcgactagccatctttgatacatatgcagctagagaacaagaagctc

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcaggggaatgcaaatcaaaacaactctgagat
tccacttcactcctgtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctcctttgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcgattcctca
gaaaattggacatagtactaccggaggatcctgcaacacctctcctgggc
atatatccagaaaatgtcccaaccagtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggagaaaacccagat
gcccctcaacagaggaatggatacataaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaagtgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatccttagtgaaataacccaatcacaaag
gaactcgaacaatatgtactcactgataagtggatattagcccagaaact
taggatacctaagatataaaatataacttgccaaatgcatgaaattcaag
aagaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaa
caaaacacccatagaaggagttacagagacaaaatttggagctgtgacaa
aacgatggaccatctagtgattgccatatgcagggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatatagctctctcttgtgagactatgcagggcctagcaaaca
cagaagtggatgatcacagtcagctattgggatgggtcacatgggcccca
atggaggaactagagaaattaccgaggagctaaagggatctgcaccctat
agtggaacacatatgactaccagtacccggagctcttgactctagctgca
tatatatcaaagatggcctagtcgcatcactgcaagaaaggtccattgaa
ctgccaacttgtatgcccagtacatgcaacgcaggtctaaaaagcatgtg
ctgtcggctaaggcccattggatctctactgacagtgcgagtagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14958647_14959807
seq2: B6Ng01-178O04.b_47_1189 (reverse)

seq1  GAGC-TCTTG-TCTTTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGC  48
      |||| ||||| ||| |||||||||||||||| |||||||| |||||||  
seq2  GAGCTTCTTGTTCTCTAGCTGCATATGTATC-AAAGATGG-CTAGTCG--  46

seq1  CATCACTGCAAAGAGAGGCCCATTGGACTTGCAAACTTTGTATGCTCCAG  98
      ||||| |||||||||||  ||||| |||||   |||||| ||||| ||||
seq2  CATCA-TGCAAAGAGAG--CCATT-GACTT-ATAACTTTATATGCCCCAG  91

seq1  TACAGGGGAACGCCAGGGCCAAAAGGAGGGAGTGGATGGGTAGGGGATTG  148
      ||||| |||||  ||||| ||||   || |||||| |||||||||||| |
seq2  TACAGTGGAAC-ACAGGGTCAAA---AGAGAGTGGGTGGGTAGGGGATAG  137

seq1  GGTGGGTGGGTATGGGGGGCCTTTGGGATAGCATTGAAAATGTAAACGAG  198
      ||||||||||||| |||| |||||||||||||||||||||||||||||| 
seq2  GGTGGGTGGGTAT-GGGGACCTTTGGGATAGCATTGAAAATGTAAACGA-  185

seq1  GAAAATACCTAATTAAAAAAAAAAAAGAATTCAGCACTAAACCCATCTGT  248
      ||||||||||| |     |||||||||||||| |||||||||||||||||
seq2  GAAAATACCTATT-----AAAAAAAAGAATTCTGCACTAAACCCATCTGT  230

seq1  TCCTGGGATTTGTTCGGTTGGGTGACTATTAATGACTGCTTCTAATTCTT  298
      |||||||||||||| ||||||| ||||||| |||||||||||||||||||
seq2  TCCTGGGATTTGTTTGGTTGGGAGACTATTCATGACTGCTTCTAATTCTT  280

seq1  TAAGGGTTATGGGACAGCCTTAGCTCAGGGGCATAGATAGAGACCCAACC  348
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAGGGTTATGGGACAGTCTTAGCTCAGGGGCATAGATAGAGACCCAACC  330

seq1  TTACCAGTTCTCCTGTCTGGTGGCACAGTCCACTTTGCCCCACAATGAAA  398
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTACCAGTTCTCCTGTCTGGTGGCACAGTCTACTTTGCCCCACAATGAAA  380

seq1  TGTGGATGTTGTAGATTAAAGAATATATTGAAATATGAGCAGTAAAATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGTTGTAGATTAAAGAATATATTGAAATATGAGCAGTAAAATGA  430

seq1  AAATCATTCATTGAGAG-AAAAAAATTGTCTCCAAGTGGTCATTCTTAAT  497
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  AAATCATTCATTGAGAGAAAAAAAATTGTCTTCAAGTGGTCATTCTTAAT  480

seq1  CCAACCTTTTTACAAAACCTTAATAAATATTCTTACAAAATAAGCATGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTTTTTACAAAACCTTAATAAATATTCTTACAAAATAAGCATGAA  530

seq1  ATTAATTGTAAAAGAAGAAAGAAATGTTTCTGGCCTCTTGCCATAATTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGTAAAAGAAGAAAGAAATGTTTCTGGCCTCTTGCCATAATTGA  580

seq1  TTTTCAATTTTTTTCTTATTAATTTTAATTAGACATTCAGAGAAAGTAGA  647
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTCAAATTTTTTCTTATTAATGTTAATTAGACATTCAGAGAAAGTAGA  630

seq1  CTTGAGAAACAGTTTCTAGTTGATATGTAAATGGTACTTAACAGGTCACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAACAGTTTCTAGTTGATATGTAAATGGTACTTAACAGGTCACA  680

seq1  GAGATGACTGAAGGAGCAAGGACCTAGAGGATATTCAAAGAATGGTTCAT  747
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTGAAGGAGCAAGGACCTAGAGGATATTCAAAGAATGGTTCAT  730

seq1  TATTGGCCAAGTGGTGCTTAACACTCTCATAAGTAACTTCTCTCACCTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCCAAGTGGTGCTTAACACTCTCATAAGTAACTTCTCTCACCTCT  780

seq1  AATCATGTAACTATGGTTCTATACTATATGTAATCCATATCTGTTTCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTAACTATGGTTCTATACTATATGTAATCCATATCTGTTTCTTT  830

seq1  TTATCAATATCCTTTAAGACTACCCAGCACTATATATTTTCAATGTAATA  897
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTATCAATATCCTTTAAGACTACCAAGCACTATATATTTTCAATGTAATA  880

seq1  ATTGAGCAATATGCTCAAGTGTCTTGTTGCATTATGTGTAAAAATTTGCA  947
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTGAGCAATATGCTCAAGTGTCTTGTTGCATTACGTGTAAAAATTTGCA  930

seq1  ATAATCTTTGAGAATAAGAAAAATTTTATTTTTGCCCAGATATAATATGT  997
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATAATCTTTGAGAATAAGAAAAATTTTATTTTTGCTCAGATATAATATGT  980

seq1  CTTAGTTAGGGTTTTGCTGCTGTAAACAGACACTATGACCATGGCAACTC  1047
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  CTTAGTTAGGGTTTTGCTGCTGT-AACAGACACTATGACCGTGGCAACTC  1029

seq1  TTAAAAGGAGACCATTTAATTGGGCCTGTCCTACAGGTTCAGAGGTTCAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTAAAAGGAGACCATTTAATTGGGCCTGTCCTACAGGTTCAGAGGTTTAG  1079

seq1  TCCATTATCATCAAGGCAGGAGCATGGCAGTGCCAGGGCAGGCATGGTTC  1147
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCATTATCATCAAGGAAGGAGCATGGCAGTGCCAGGGCAGGCATGGTTC  1129

seq1  AGGAGGAGCTGAGA  1161
      ||||||||||||||
seq2  AGGAGGAGCTGAGA  1143


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