BAC Information

Click to search

BAC

Clone NameB6Ng01-179B03
Chromosome5 (Build37)
Map Location 59,870,915 - 59,871,955
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179B03.bB6Ng01-179B03.g
ACCGA005891GA005892
length1,2301,040
definitionB6Ng01-179B03.b B6Ng01-179B03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccccacccctaagcccttacccaataaaaaccctagttttcgagt
ctcatggccgacattcattatctcctgagtgagatgcatgttggtctgga
gctctgtcattaaactacctcgtgtaattaaatcaagacagtcttttcgt
gattctttgggtgcacgctgaatcagaaattgagtgggggtctcaccact
aggttctatcactgaacaattctgattctctctcccagttatctttccct
tctttcatcctctccaaattgatccctcctgtttacccacacaatccctc
tcccattcagtgttctgccttcatctatctctgatttctcttttatttcc
cattctcagtgaaattcaagcatcctgcctaagacctaccttgttgcttg
tcttctttggatctgtgattgcagcatggttatcctgtactatatagcta
atatccacttttaagtacataccatgtttgtctatctgggtctgggttac
ctcactcagcatgatttctttctagttccatcaatttgtctccaaatttc
ataatttcattgtttttaatagatagtcaatctcccagtgtataaatcat
ccaaaatctttatcaatttcttgtttcaaggacatcaaggctgtttgcaa
tttcaggctattttgaataaagctgctatgaatatagttcagtaagtgtt
cttgtggtatcatagagtatcttttgggtatatgcccaagagtggtataa
ctagattttgagatagaactatccccaatttactgagaaactgccaaaat
gatttccaaagtagttgtacacgtttacactcccactagcaatggagcaa
tattctccttgctagcatcctcaccagcatcagttgtcatttgatttttt
tttttattttagtaattctgatgagtgtaagatgtaacctcagaattgtt
ttgatttgcatatcagtgatgactaaggtgttgaacacttctttaggtgt
ttccatggctttggagagttctctgcaagaattctgtttattgttacaac
atttttaaaattgagtctttgggttgggtttgttctgaccttatttgagt
cattatttattttgtatattcaaggcttttctgtctcaagttaggtatta
tcttttttccattctgtagcttaccttttcccttatgattgttcctttgc
ctatgtagaacactttccatgaatctcact

gaattcaaaagaatgaagttcctggaacacaaaagaattccgtcaagaaa
aactccaatttcaagtgaaagacactttataatgatcaaattatgtaaat
gtatgatgctgctatttgatgatgtgtgtagggttgaagacagcttactg
caaaacagattcttattgccacatgagttccaaagacttccccagaacaa
atgctaccttacagctctttctcatggactctgagttgtctagtctcttt
cagattggcaatatcagctctatatctgggcaactgacatataaccagtg
atgtactctctcctgaagagttggcattctttctgaatcttttttctaag
ttctgtgactcagtgcttatttgctttgtagaaaccatctttgaatttgc
ttttgcaacataaaagtaaaactgtaggaaatcacgctgagctttgcttg
ctgagaaccttcaagtacacatggtaccgtctatatcacaaagtaaacag
catggcattaaacaaaaccactaaaccatgctgctctgtcttttgcctgc
gaggaagatataagatagacacctatctgtgcacactatgggtagtatgt
tggtatgaatagtcttttgctttgagtgtaaatggaagagaaacattttg
ctgattcccatcccaccctacctcttaagagattcttgccagctcacgaa
catgactctgtaaagcctgccctttcccaatccctctgctaaaaaccatt
agattacttttagagctagctccagtggtatattctcttacttgaccatt
tttgcctttgggaggctgactactaataccagttataatgtattgaagta
cagcaatcaaaagatcctggaatcactaataaatgccccaattagaattc
acacctcatgctaacttgagcttcctgtttatctttctaacctctcattt
tcctgtggtgcatgtctgtctctctctatctagaaggcagttctttgttc
ttccaggaaaaattattcctccccactaagaatttccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59870915_59871955
seq2: B6Ng01-179B03.g_66_1105 (reverse)

seq1  AAAGGAAA-TCTTAGTGGGGAGG-ATAATTTGTCCTGG-AGGACAAAGAA  47
      |||||||| |||||||||||||| ||||||| |||||| || ||||||||
seq2  AAAGGAAATTCTTAGTGGGGAGGAATAATTTTTCCTGGAAGAACAAAGAA  50

seq1  CTGCC-TCTAGATAGAGAAGAGACAGACATGCA-CACAGGAAAATGAGAG  95
      ||||| ||||||||||| ||||||||||||||| ||||||||||||||||
seq2  CTGCCTTCTAGATAGAG-AGAGACAGACATGCACCACAGGAAAATGAGAG  99

seq1  GTTAGAAAGATAAAACAGGAAAGCTCAAGTTAGCATGAGGTGTTGAATTC  145
      ||||||||||| ||||||| |||||||||||||||||||||| |||||||
seq2  GTTAGAAAGAT-AAACAGG-AAGCTCAAGTTAGCATGAGGTG-TGAATTC  146

seq1  TAATTGGGGCATTTAATTAGGTGATTCAAGGATCTTTTGATTGCTGTACT  195
      |||||||||||||| |||| ||||||| ||||||||||||||||||||||
seq2  TAATTGGGGCATTT-ATTA-GTGATTCCAGGATCTTTTGATTGCTGTACT  194

seq1  TCAATACATTTATAACTGGTTATTAGTAGTCAGCCT-CCAAAGGCAAAAA  244
      |||||||| |||||||||| |||||||||||||||| |||||||||||||
seq2  TCAATACA-TTATAACTGG-TATTAGTAGTCAGCCTCCCAAAGGCAAAAA  242

seq1  TGGTCAAGTAAGAGAATATACCACTGGAGCTAGCTCT-AAAGTAATCTAA  293
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGTCAAGTAAGAGAATATACCACTGGAGCTAGCTCTAAAAGTAATCTAA  292

seq1  TGGTTTTTAGCAGAGGGATTGGGAAAGGGCAGGCTTTACAGAGTCATGTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTAGCAGAGGGATTGGGAAAGGGCAGGCTTTACAGAGTCATGTT  342

seq1  CGTGAGCTGGCAAGAATCTCTTAAGAGGTAGGGTGGGATGGGAATCAGCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGCTGGCAAGAATCTCTTAAGAGGTAGGGTGGGATGGGAATCAGCA  392

seq1  AAATGTTTCTCTTCCATTTACACTCAAAGCAAAAGACTATTCATACCAAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTCTCTTCCATTTACACTCAAAGCAAAAGACTATTCATACCAAC  442

seq1  ATACTACCCATAGTGTGCACAGATAGGTGTCTATCTTATATCTTCCTCGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACCCATAGTGTGCACAGATAGGTGTCTATCTTATATCTTCCTCGC  492

seq1  AGGCAAAAGACAGAGCAGCATGGTTTAGTGGTTTTGTTTAATGCCATGCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAGACAGAGCAGCATGGTTTAGTGGTTTTGTTTAATGCCATGCT  542

seq1  GTTTACTTTGTGATATAGACGGTACCATGTGTACTTGAAGGTTCTCAGCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTTGTGATATAGACGGTACCATGTGTACTTGAAGGTTCTCAGCA  592

seq1  AGCAAAGCTCAGCGTGATTTCCTACAGTTTTACTTTTATGTTGCAAAAGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCTCAGCGTGATTTCCTACAGTTTTACTTTTATGTTGCAAAAGC  642

seq1  AAATTCAAAGATGGTTTCTACAAAGCAAATAAGCACTGAGTCACAGAACT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAAGATGGTTTCTACAAAGCAAATAAGCACTGAGTCACAGAACT  692

seq1  TAGAAAAAAGATTCAGAAAGAATGCCAACTCTTCAGGAGAGAGTACATCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAAGATTCAGAAAGAATGCCAACTCTTCAGGAGAGAGTACATCA  742

seq1  CTGGTTATATGTCAGTTGCCCAGATATAGAGCTGATATTGCCAATCTGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTATATGTCAGTTGCCCAGATATAGAGCTGATATTGCCAATCTGAA  792

seq1  AGAGACTAGACAACTCAGAGTCCATGAGAAAGAGCTGTAAGGTAGCATTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTAGACAACTCAGAGTCCATGAGAAAGAGCTGTAAGGTAGCATTT  842

seq1  GTTCTGGGGAAGTCTTTGGAACTCATGTGGCAATAAGAATCTGTTTTGCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGGAAGTCTTTGGAACTCATGTGGCAATAAGAATCTGTTTTGCA  892

seq1  GTAAGCTGTCTTCAACCCTACACACATCATCAAATAGCAGCATCATACAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTGTCTTCAACCCTACACACATCATCAAATAGCAGCATCATACAT  942

seq1  TTACATAATTTGATCATTATAAAGTGTCTTTCACTTGAAATTGGAGTTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAATTTGATCATTATAAAGTGTCTTTCACTTGAAATTGGAGTTTT  992

seq1  TCTTGACGGAATTCTTTTGTGTTCCAGGAACTTCATTCTTTTGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACGGAATTCTTTTGTGTTCCAGGAACTTCATTCTTTTGAATTC  1040


| Home | SequenceCutter | Blast | Download |