BAC Information

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BAC

Clone NameB6Ng01-179H18
Chromosome5 (Build37)
Map Location 66,159,498 - 66,314,085
singlet/doubletdoublet
Overlap geneB3bp, LOC100041809, Rhoh, LOC626641
Upstream geneKlf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261
Downstream geneEG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179H18.bB6Ng01-179H18.g
ACCGA006190GA006191
length483983
definitionB6Ng01-179H18.b B6Ng01-179H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,313,605 - 66,314,085)(66,159,498 - 66,160,443)
sequence
gaattctagtgttccttcctcttctgagaacactacccgtgttcatggta
agttcatggtacttcactctcatgacctaattgcctctcaaaggtctggc
tcctagtatctggcccctagcactggggattagagatttgatatatggat
ttggagaatagacatttagtctacagtaaggcatgagtgaatcccaggat
agaaagggaggcattcctagaggcagaaaacaaggatctgagatgacagg
ggcatgcaggtaatcctcctgcctcaggctcatgtatttcctgcttggtg
gtgaaaaacattttttttaaaaatgtatttatttattatatgtaagtaca
ctgtagctgacttcagacacaccagaagagggcatcagatctcattacgg
gtggttgtgagccaccatggcgttgctgggatttgaacttaggacctttg
gaagagcattcagtgctcttaatcgctgagcct
gaattcatgatgtggcagaggttggttctaggccttgctcctgataagaa
ctactgtgtattaaatgtatctgccaacgtccaattgatgataaactgta
gtaagaagtctgaagcctagaaataattctgtttcagaacctaaatggtg
gcagctctggcttgaaatctcaggacttgggaagctggggcaggaagact
cacaaataagctcagggtggttctgggctgtgggctacataatgagttcc
aagccaagccgagctagaaatcctacctcaaaaagtcataaagggggcta
gagagatgcctcagcagttaggagtactggctctttttccagaggacctg
ggttcgatttccaacaccaacatggtcactaacagctgtctgtaactctg
gtctcaggggatctgacatcctcttctcatctccataggtaccaagtgta
cttgtggtacacgctcatccatgcaggaaaaacatccatacacatttttt
aaaaattgggtagaaggatggatggagggagaaaagcaataaaccgatta
tcaaaaaagttgatacagttgccctctacattgccctggcagtccagctg
gcttcatgctcaaaaatatccccctgcctctgtctcccaaagtgctggca
ttaaggttgtactctaccatccttaattcatatatttttaagaaggatat
ttaaaaggtgtttctgctaattaaatttaagaatgaatttgggagatagt
gaatagaacttaaattttttgattgtttccttttttctagatgggcatgg
tatctcattctttgtaatcctggtattgggaagatgggcaggggcgtggg
gggcggcacctgcagattcaagggctggtgccagttccgtagtgatatcc
agggcagcttaggggttctattatatagtggagatcttgttctcaataac
aaaaaccaaattacccatcccccctccaaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66313605_66314085
seq2: B6Ng01-179H18.b_33_514 (reverse)

seq1  GGCTCAGCGCTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTAAGTTCAA  50
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  GGCTCAGCGATTAAGAGCACTGAATGCTCTTCCAAAGGTCCTAAGTTCAA  50

seq1  ATCCCAGCAACGCCATGGTGGCTCACAACCACCCGTAATGAGATCTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCAACGCCATGGTGGCTCACAACCACCCGTAATGAGATCTGATG  100

seq1  CCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAA  150
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTGTACTTACATATAATAA  150

seq1  ATAAATACATTTTTAAAAAAAATGTTTTTCACCACCAAGCAGGAAATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACATTTTTAAAAAAAATGTTTTTCACCACCAAGCAGGAAATACA  200

seq1  TGAGCCTGAGGCAGGAGGATTACCTGCATGCCCCTGTCATCTCAGATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGAGGCAGGAGGATTACCTGCATGCCCCTGTCATCTCAGATCCT  250

seq1  TGTTTTCTGCCTCTAGGAATGCCTCCCTTTCTATCCTGGGATTCACTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGCCTCTAGGAATGCCTCCCTTTCTATCCTGGGATTCACTCAT  300

seq1  GCCTTACTGTAGACTAAATGTCTATTCTCCAAATCCATATATCAAATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACTGTAGACTAAATGTCTATTCTCCAAATCCATATATCAAATCTC  350

seq1  TAATCCCCAGTGCTAGGGGCCAGATACTAGGAGCCAGACCTTTGAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCCAGTGCTAGGGGCCAGATACTAGGAGCCAGACCTTTGAGAGGC  400

seq1  AATTAGGTCATGAGAGTGAAGTACCATGAACTTACCATGAACAC-CTTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  AATTAGGTCATGAGAGTGAAGTACCATGAACTTACCATGAACACGGGTAG  450

seq1  TGTTCTCAGAAGAGGAAGGAACACTAGAATTC  481
      ||||||||||||||||||||||||||||||||
seq2  TGTTCTCAGAAGAGGAAGGAACACTAGAATTC  482

seq1: chr5_66159498_66160443
seq2: B6Ng01-179H18.g_69_1029

seq1  GAATTCATGATGTGGCAGAGGTTGGTTCTAGGCCTTGCTCCTGATAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATGTGGCAGAGGTTGGTTCTAGGCCTTGCTCCTGATAAGAA  50

seq1  CTACTGTGTATTAAATGTATCTGCCAACGTCCAATTGATGATAAACTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGTATTAAATGTATCTGCCAACGTCCAATTGATGATAAACTGTA  100

seq1  GTAAGAAGTCTGAAGCCTAGAAATAATTCTGTTTCAGAACCTAAATGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGTCTGAAGCCTAGAAATAATTCTGTTTCAGAACCTAAATGGTG  150

seq1  GCAGCTCTGGCTTGAAATCTCAGGACTTGGGAAGCTGGGGCAGGAAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTGGCTTGAAATCTCAGGACTTGGGAAGCTGGGGCAGGAAGACT  200

seq1  CACAAATAAGCTCAGGGTGGTTCTGGGCTGTGGGCTACATAATGAGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATAAGCTCAGGGTGGTTCTGGGCTGTGGGCTACATAATGAGTTCC  250

seq1  AAGCCAAGCCGAGCTAGAAATCCTACCTCAAAAAGTCATAAAGGGGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGCCGAGCTAGAAATCCTACCTCAAAAAGTCATAAAGGGGGCTA  300

seq1  GAGAGATGCCTCAGCAGTTAGGAGTACTGGCTCTTTTTCCAGAGGACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGCCTCAGCAGTTAGGAGTACTGGCTCTTTTTCCAGAGGACCTG  350

seq1  GGTTCGATTTCCAACACCAACATGGTCACTAACAGCTGTCTGTAACTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCGATTTCCAACACCAACATGGTCACTAACAGCTGTCTGTAACTCTG  400

seq1  GTCTCAGGGGATCTGACATCCTCTTCTCATCTCCATAGGTACCAAGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGGGATCTGACATCCTCTTCTCATCTCCATAGGTACCAAGTGTA  450

seq1  CTTGTGGTACACGCTCATCCATGCAGGAAAAACATCCATACACATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGTACACGCTCATCCATGCAGGAAAAACATCCATACACATTTTTT  500

seq1  AAAAATTGGGTAGAAGGATGGATGGAGGGAGAAAAGCAATAAACCGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGGGTAGAAGGATGGATGGAGGGAGAAAAGCAATAAACCGATTA  550

seq1  TCAAAAAAGTTGATACAGTTGCCCTCTACATTGCCCTGGCAGTCCAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAGTTGATACAGTTGCCCTCTACATTGCCCTGGCAGTCCAGCTG  600

seq1  GCTTCATGCTCAAAAATATCCCCCTGCCTCTGTCTCCC-AAGTGCTGGCA  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTTCATGCTCAAAAATATCCCCCTGCCTCTGTCTCCCAAAGTGCTGGCA  650

seq1  TTAAGGTTGTACTCTACCATCCTTAATTCATATA-TTTTAAGAAGGATAT  698
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAAGGTTGTACTCTACCATCCTTAATTCATATATTTTTAAGAAGGATAT  700

seq1  TTAAAAGGTGTTTCTGCTAATTAAATTTAAGAATGAATTTGGGAGATAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGTGTTTCTGCTAATTAAATTTAAGAATGAATTTGGGAGATAGT  750

seq1  GAATAGAACTT-AATTTTTTGATTGTTTCCTTTTTTCTAGATGGGCATGG  797
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAACTTAAATTTTTTGATTGTTTCCTTTTTTCTAGATGGGCATGG  800

seq1  TATCTCATTC-TTGTAATCCTGGTATTGGGAAGATGGGGCAGGGGCG-GG  845
      |||||||||| |||||||||||||||||||||||| ||||||||||| ||
seq2  TATCTCATTCTTTGTAATCCTGGTATTGGGAAGAT-GGGCAGGGGCGTGG  849

seq1  GGGGCGGCA-CTGCAGATTCAA-GGCTGG-GCCAG-TCCGTAGTGATATC  891
      ||||||||| |||||||||||| |||||| ||||| ||||||||||||||
seq2  GGGGCGGCACCTGCAGATTCAAGGGCTGGTGCCAGTTCCGTAGTGATATC  899

seq1  CAGGCCAGCT--AGGGTTCTA-TATATAGT-GAGATCTTG-TCTCAA-AA  935
      |||| |||||   |||||||| |||||||| ||||||||| |||||| ||
seq2  CAGGGCAGCTTAGGGGTTCTATTATATAGTGGAGATCTTGTTCTCAATAA  949

seq1  CAAAAA-CAAAT  946
      |||||| |||||
seq2  CAAAAACCAAAT  961