BAC Information

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BAC

Clone NameB6Ng01-180E24
Chromosome5 (Build37)
Map Location 86,764,084 - 86,765,230
singlet/doubletsinglet
Overlap geneTmprss11d
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c
Downstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180E24.bB6Ng01-180E24.g
ACCGA006786GA006787
length1,159763
definitionB6Ng01-180E24.b B6Ng01-180E24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaaaattaggaagaaaaatttaattacattttgatatacatgt
tcttaataaatatgtctgtataagatatacatctactatgtttgtgtgta
taacttgtgtatgtttgtatcaggacccatttatagatatgtacctataa
atctattgcattttaacagtctcttatttaaaatgcaaatatttctattt
atgtgcttatttatataataaactactaaacatgaatatttataagtaaa
taaatgtaaacataatacattaaacttctcatatataataatgttaaatt
attgacactagaattgttttaattaagagaatagtatgtttggatttttc
cttcaaacaatgtttgtgtttgagatattcagtgaagaaggatgcatttg
gagactgttacagtctaatattgaaaaggatggttgcattacattaaaag
ttatagagttgccgggcagtggtggcgcacacctttaatcctagcactct
gaaggcagaggcaggtggatttctgagtctgaggccagccttgtcaacag
agtaagttccaggacagccggggctacacagagaaaccctgtctcagaaa
aaaaaaagttatggagttgagagatatttcagtagtcaaagttgaagact
aggcaactgggtatgtggacctgagagagagtcaagatttgaagaagact
cccagatttctttcataagcaactggttgatggtgatgtcaacactgaga
cagacagtgctctttggatgaatgcacttggttgagatgataagacaggt
acagctctatgtatattaatgctgtctaaaaatatcattacatgtgttca
tatctgtgggatgaaaaaatacagttgtatcatgtctgagatacaagttc
atgactaatcaacagataatcaacagaggacccgaagtcagtgaaaggag
tgactgaactgtgatacgtggctcacagtgtacactcatgttaacatgtg
aggacacactaggagatatcaaaggaaaaagagaagatatcttatgtaga
tagcaggaaaggtcatgcttattcttagaagtcaggaggaatgaatattt
cagccaacaatccaacagtgcttaaatggtgctcatgaggttccaaggag
tagaagtaa
gaattcatccgaaacctgtttggtaaaactcaccttggcacaggtaatgg
gcaggcttggcttttcctcagtgccagccagatacaatagctgactccta
ttgggaaatgtgaagccatattccaaaataaacactttgaactttctcat
gagaatactagatgggatagcagagtctcagaagttcaagaatgtaaaaa
aaaaaaaaaaaaaaaaaaaatggctatcttgcctaaaccaatctacagat
tcaatgcaatccccataagaattccaattcaattcttcaccgagttagaa
aaggccatttgcaaattcatctgaaataacaaaaaacctaggataggaaa
aactattctcaacaataaaagaacctctggtggaatcaccatgcttgacc
ccaagctgtagtacagagcaattgtgataaaaactgcatggttactggta
cagcgacagacaggtagataaatggaatagaattgaagactcagaaatga
acccacatacctatggtcacttgatctttgacaaagggagctaaaaccat
ccagtggaaagaagacagcattttcaacaaatggtgctggcacaactggc
agttagcatgtagaagaatgtgaattgatccattcttacctctttgtaca
aagcccaagtctaagtggatcaaagaactccacataaaaccagagacacg
ggaacttatagaggagaaagtgggggaaaatctcaaacatataggtacgg
gggggggggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86764084_86765230
seq2: B6Ng01-180E24.b_32_1190

seq1  GAATTCTTAAAATTAGGAAGAAAAATTTAATTACATTTTGATATACATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAATTAGGAAGAAAAATTTAATTACATTTTGATATACATGT  50

seq1  TCTTAATAAATATGTCTGTATAAGATATACATCTACTATGTTTGTGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATAAATATGTCTGTATAAGATATACATCTACTATGTTTGTGTGTA  100

seq1  TAACTTGTGTATGTTTGTATCAGGACCCATTTATAGATATGTACCTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTGTATGTTTGTATCAGGACCCATTTATAGATATGTACCTATAA  150

seq1  ATCTATTGCATTTTAACAGTCTCTTATTTAAAATGCAAATATTTCTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTGCATTTTAACAGTCTCTTATTTAAAATGCAAATATTTCTATTT  200

seq1  ATGTGCTTATTTATATAATAAACTACTAAACATGAATATTTATAAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTTATTTATATAATAAACTACTAAACATGAATATTTATAAGTAAA  250

seq1  TAAATGTAAACATAATACATTAAACTTCTCATATATAATAATGTTAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAACATAATACATTAAACTTCTCATATATAATAATGTTAAATT  300

seq1  ATTGACACTAGAATTGTTTTAATTAAGAGAATAGTATGTTTGGATTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACACTAGAATTGTTTTAATTAAGAGAATAGTATGTTTGGATTTTTC  350

seq1  CTTCAAACAATGTTTGTGTTTGAGATATTCAGTGAAGAAGGATGCATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACAATGTTTGTGTTTGAGATATTCAGTGAAGAAGGATGCATTTG  400

seq1  GAGACTGTTACAGTCTAATATTGAAAAGGATGGTTGCATTACATTAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGTTACAGTCTAATATTGAAAAGGATGGTTGCATTACATTAAAAG  450

seq1  TTATAGAGTTGCCGGGCAGTGGTGGCGCACACCTTTAATCCTAGCACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGTTGCCGGGCAGTGGTGGCGCACACCTTTAATCCTAGCACTCT  500

seq1  GAAGGCAGAGGCAGGTGGATTTCTGAGTCTGAGGCCAGCCTTGTCAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGAGGCAGGTGGATTTCTGAGTCTGAGGCCAGCCTTGTCAACAG  550

seq1  AGTAAGTTCCAGGACAGCCGGGGCTACACAGAGAAACCCTGTCTCAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTCCAGGACAGCCGGGGCTACACAGAGAAACCCTGTCTCAGAAA  600

seq1  AAAAAAAGTTATGGAGTTGAGAGATATTTCAGTAGTCAAAGTTGAAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTTATGGAGTTGAGAGATATTTCAGTAGTCAAAGTTGAAGACT  650

seq1  AGGCAACTGGGTATGTGGACCTGAGAGAGAGTCAAGATTTGAAGAAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTGGGTATGTGGACCTGAGAGAGAGTCAAGATTTGAAGAAGACT  700

seq1  CCCAGATTTCTTTCATAAGCAACTGGTTGATGGTGATGTCAACACTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATTTCTTTCATAAGCAACTGGTTGATGGTGATGTCAACACTGAGA  750

seq1  CAGACAGTGCTCTTTGGATGAATGCACTTGGTTGAGATGATAAGACAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTGCTCTTTGGATGAATGCACTTGGTTGAGATGATAAGACAGGT  800

seq1  ACAGCTCTATGTATATTAATGCTGTCTAAAAATATCATTACATGTGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTATGTATATTAATGCTGTCTAAAAATATCATTACATGTGTTCA  850

seq1  TATCTGT-GGATGAAAAAATACAGTTGTATCATGTCTGAGATACAAGTTC  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGGGATGAAAAAATACAGTTGTATCATGTCTGAGATACAAGTTC  900

seq1  ATGACTAATCAACAGATAATCAACAGAGGACCCGAAGTCAGTGAAAGGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAATCAACAGATAATCAACAGAGGACCCGAAGTCAGTGAAAGGAG  950

seq1  TGACTGAACTGTGATACGTGGCTCACAGTGTACACTCATGTTTAACATGT  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGACTGAACTGTGATACGTGGCTCACAGTGTACACTCATG-TTAACATGT  999

seq1  GAGGAACACACTA-GAGATATCAAAGGAAAAAGAGAAGATATC-TATGTA  1047
      |||| |||||||| ||||||||||||||||||||||||||||| ||||||
seq2  GAGG-ACACACTAGGAGATATCAAAGGAAAAAGAGAAGATATCTTATGTA  1048

seq1  GATAGCAGGAAA-GTCATGCCTA-TCTAAG-AGCCA-GAGG-ATG-ATAT  1091
      |||||||||||| ||||||| || ||| || || || |||| ||| ||||
seq2  GATAGCAGGAAAGGTCATGCTTATTCTTAGAAGTCAGGAGGAATGAATAT  1098

seq1  TTCAG-CAACAATCCAACAGTGC-TAAATGGTGCTCA-GAGG-TCCAA-G  1136
      ||||| ||||||||||||||||| ||||||||||||| |||| ||||| |
seq2  TTCAGCCAACAATCCAACAGTGCTTAAATGGTGCTCATGAGGTTCCAAGG  1148

seq1  AGTAGAAGTAA  1147
      |||||||||||
seq2  AGTAGAAGTAA  1159