BAC Information

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BAC

Clone NameB6Ng01-180M07
Chromosome5 (Build37)
Map Location 98,126,540 - 98,272,471
singlet/doubletdoublet
Overlap genenone
Upstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180M07.bB6Ng01-180M07.g
ACCGA007112GA007113
length7891,143
definitionB6Ng01-180M07.b B6Ng01-180M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,271,681 - 98,272,471)(98,126,540 - 98,127,682)
sequence
gaattctggaagtttttgaaaatgattttgaaatagtgtactacacttct
acattggtgctctaccccaggagtgtcctagaatgtgaatacatttattg
aaatattttgcactgcactgacaatatcttacaaggacatctgtcataca
gaaatagatagaaggaattatttataatgattagaaaaacacacatttac
tctttaagttgtgtgttataagaattgtctttctcttaccaccttaaaga
ttcctaacacccttttgtcaaatgtaaatttagcaatgtcagactgtaaa
agagaatatttatacagttctgatcgttagatgaaactaccattttttaa
aaaatattaaactatctcaagcaatttttgtaagcagagcaaaatgatgt
gggaagtgtgaaataaaaaatgttttcactcattagagatgaccttatat
agtttcagtacttatgagttatcaggacatctgtaacttgtgaaaatcat
tttcataaactatatccaaatattatgtattttctctttatttttaaaac
atgtaaatacacacacatactaaaagctatattttatgcattttgatata
ctaaagtgcttaaattaagagtttgcaaattcatttgttaagatatgcca
acaaaggcattggggggagatactactaacgttatttatgcccttgctcc
ttcagaggaaaggtcacctttccagagcagagcaaactggcacactggga
tggagcggaacatcagtaacgtcaaacacgtttcacttg
gaattcaggctgaatgaaaaaaaaaaggttcacaactatctcataaagcc
ttgtttatttttgctacagatgcttgttctctcaatattctttccttgcc
aatatctggcctttgctggggcggtttccaatcattgctgctgttagcca
gctgatcttcagagtcgtcaacacacggaccctggggagcacgcgattcc
ccattgtcagcctctttgcacaatgtggcctcagcaattcgagcagttcc
aaacatccctgcattctctggctcaagattggcatcatgggaaggctgcc
aggattccaggaggggagccaggggatcagagtgccaaagtcagcaggtg
gcaatggccagtagcaactcagagaggcaaattagtctttccagcactta
ggacagccaacagaggtggaagccagtgcagttcttgttatccgatgtat
aggtattgttataaatgacatcagagccttgtacactgctcactgggctt
gttagccaggtggcaatttctgaagcatcattactgctccaagcaaagcg
tatgctctataattcaacttagatctgaggtcaataaattatatttcttg
gaattatgtcttaggcacacaaagactagttctggtattgattcagtacc
atcttgttagttggtaagtatacttaccagtaaataaatcacactaagac
cattgatcacaagtaaaccaggaagtgctgcctcgaagattaaacaataa
gaaacataatatctagatgtgatatttcagaattaaaacccataaaaatt
tggtgatagaatacacatagaataaagatgaaaataagaaagttctgcat
attattttcacatacaacccaacatgctagttgttggagtacacagaagt
ctgagaggagctagcatttcttatagatctcaaatagcaaccattggaag
actctggggttatatctttcctttagcttctattaggaaagggttagctg
ttgttttcagaggagtgaaaattatttactatcttgatcctttctaaagc
agagctataggaaagctggtaataataagagggtctcagtttggaacaat
attctataaggtgatatattttctgaatgttctggtgatgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_98271681_98272471
seq2: B6Ng01-180M07.b_42_830 (reverse)

seq1  CAAGTGAAAACGTGTTTGACGTTACTGATGTTCCGCTCCATCCCAGTGTG  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTG-AAACGTGTTTGACGTTACTGATGTTCCGCTCCATCCCAGTGTG  49

seq1  CCAGTTTGCTCTGCCTCTGGAAAGGTGACCTTTCCTCTGAAGGAGCAAGG  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGCTCTG-CTCTGGAAAGGTGACCTTTCCTCTGAAGGAGCAAGG  98

seq1  GCATAAATAACGTTAGTAGTATCT-CCCCCAATGCCTTTGTTGGCATATC  149
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCATAAATAACGTTAGTAGTATCTCCCCCCAATGCCTTTGTTGGCATATC  148

seq1  TTAACAAATGAATTTGCAAACTCTTAATTTAAGCACTTTAGTATATCAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAATGAATTTGCAAACTCTTAATTTAAGCACTTTAGTATATCAAA  198

seq1  ATGCATAAAATATAGCTTTTAGTATGTGTGTGTATTTACATGTTTTTAAA  249
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGCATAAAATATAGCTTTTAGTATGTGTGTGTATTTACATG-TTTTAAA  247

seq1  AATAAAGAGAAAATACATAATATTTGGATATAGTTTATGAAAATGATTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAGAAAATACATAATATTTGGATATAGTTTATGAAAATGATTTT  297

seq1  CACAAGTTACAGATGTCCTGATAACTCATAAGTACTGAAACTATATAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTTACAGATGTCCTGATAACTCATAAGTACTGAAACTATATAAGG  347

seq1  TCATCTCTAATGAGTGAAAACATTTTTTATTTCACACTTCCCACATCATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTAATGAGTGAAAACATTTTTTATTTCACACTTCCCACATCATT  397

seq1  TTGCTCTGCTTACAAAAATTGCTTGAGATAGTTTAATATTTTTTAAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGCTTACAAAAATTGCTTGAGATAGTTTAATATTTTTTAAAAAA  447

seq1  TGGTAGTTTCATCTAACGATCAGAACTGTATAAATATTCTCTTTTACAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTTCATCTAACGATCAGAACTGTATAAATATTCTCTTTTACAGT  497

seq1  CTGACATTGCTAAATTTACATTTGACAAAAGGGTGTTAGGAATCTTTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATTGCTAAATTTACATTTGACAAAAGGGTGTTAGGAATCTTTAAG  547

seq1  GTGGTAAGAGAAAGACAATTCTTATAACACACAACTTAAAGAGTAAATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAGAGAAAGACAATTCTTATAACACACAACTTAAAGAGTAAATGT  597

seq1  GTGTTTTTCTAATCATTATAAATAATTCCTTCTATCTATTTCTGTATGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTCTAATCATTATAAATAATTCCTTCTATCTATTTCTGTATGAC  647

seq1  AGATGTCCTTGTAAGATATTGTCAGTGCAGTGCAAAATATTTCAATAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCCTTGTAAGATATTGTCAGTGCAGTGCAAAATATTTCAATAAAT  697

seq1  GTATTCACATTCTAGGACACTCCTGGGGTAGAGCACCAATGTAGAAGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCACATTCTAGGACACTCCTGGGGTAGAGCACCAATGTAGAAGTGT  747

seq1  AGTACACTATTTCAAAATCATTTTCAAAAACTTCCAGAATTC  791
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTATTTCAAAATCATTTTCAAAAACTTCCAGAATTC  789

seq1: chr5_98126540_98127682
seq2: B6Ng01-180M07.g_67_1209

seq1  GAATTCAGGCTGAATGAAAAAAAAAAGGTTCACAACTATCTCATAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTGAATGAAAAAAAAAAGGTTCACAACTATCTCATAAAGCC  50

seq1  TTGTTTATTTTTGCTACAGATGCTTGTTCTCTCAATATTCTTTCCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTTTTGCTACAGATGCTTGTTCTCTCAATATTCTTTCCTTGCC  100

seq1  AATATCTGGCCTTTGCTGGGGCGGTTTCCAATCATTGCTGCTGTTAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTGGCCTTTGCTGGGGCGGTTTCCAATCATTGCTGCTGTTAGCCA  150

seq1  GCTGATCTTCAGAGTCGTCAACACACGGACCCTGGGGAGCACGCGATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTTCAGAGTCGTCAACACACGGACCCTGGGGAGCACGCGATTCC  200

seq1  CCATTGTCAGCCTCTTTGCACAATGTGGCCTCAGCAATTCGAGCAGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTCAGCCTCTTTGCACAATGTGGCCTCAGCAATTCGAGCAGTTCC  250

seq1  AAACATCCCTGCATTCTCTGGCTCAAGATTGGCATCATGGGAAGGCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCCCTGCATTCTCTGGCTCAAGATTGGCATCATGGGAAGGCTGCC  300

seq1  AGGATTCCAGGAGGGGAGCCAGGGGATCAGAGTGCCAAAGTCAGCAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCCAGGAGGGGAGCCAGGGGATCAGAGTGCCAAAGTCAGCAGGTG  350

seq1  GCAATGGCCAGTAGCAACTCAGAGAGGCAAATTAGTCTTTCCAGCACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCCAGTAGCAACTCAGAGAGGCAAATTAGTCTTTCCAGCACTTA  400

seq1  GGACAGCCAACAGAGGTGGAAGCCAGTGCAGTTCTTGTTATCCGATGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAACAGAGGTGGAAGCCAGTGCAGTTCTTGTTATCCGATGTAT  450

seq1  AGGTATTGTTATAAATGACATCAGAGCCTTGTACACTGCTCACTGGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTGTTATAAATGACATCAGAGCCTTGTACACTGCTCACTGGGCTT  500

seq1  GTTAGCCAGGTGGCAATTTCTGAAGCATCATTACTGCTCCAAGCAAAGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCAGGTGGCAATTTCTGAAGCATCATTACTGCTCCAAGCAAAGCG  550

seq1  TATGCTCTATAATTCAACTTAGATCTGAGGTCAATAAATTATATTTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCTATAATTCAACTTAGATCTGAGGTCAATAAATTATATTTCTTG  600

seq1  GAATTATGTCTTAGGCACACAAAGACTAGTTCTGGTATTGATTCAGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATGTCTTAGGCACACAAAGACTAGTTCTGGTATTGATTCAGTACC  650

seq1  ATCTTGTTAGTTGGTAAGTATACTTACCAGTAAATAAATCACACTAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTTAGTTGGTAAGTATACTTACCAGTAAATAAATCACACTAAGAC  700

seq1  CATTGATCACAAGTAAACCAGGAAGTGCTGCCTCGAAGATTAAACAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATCACAAGTAAACCAGGAAGTGCTGCCTCGAAGATTAAACAATAA  750

seq1  GAAACATAATATCTAGATGTGATATTTCAGAATTAAAA-CCATAAAAATT  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAAACATAATATCTAGATGTGATATTTCAGAATTAAAACCCATAAAAATT  800

seq1  TGGTGATAGAATACACATAGAATAAAGATGAAAATAAGAAAGTTCTGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATAGAATACACATAGAATAAAGATGAAAATAAGAAAGTTCTGCAT  850

seq1  ATTATTTTCACATACAACCCAACATGCTAGTTGTTGGAGTACACAGAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCACATACAACCCAACATGCTAGTTGTTGGAGTACACAGAAGT  900

seq1  CTGAGAGGAGCTAGCA-TTCTTATAGATCTCAAATAGCAACCATT-GAAG  947
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  CTGAGAGGAGCTAGCATTTCTTATAGATCTCAAATAGCAACCATTGGAAG  950

seq1  ACTCTGGGG-TATAATCTTCCTTTAGCTTCTATTAGGAAAGGGTTAGCTG  996
      ||||||||| ||||   |||||||||||||||||||||||||||||||||
seq2  ACTCTGGGGTTATATCTTTCCTTTAGCTTCTATTAGGAAAGGGTTAGCTG  1000

seq1  T--GTTTCAGAGAAGTGAAAATTATTTACTATCTTGATCCTTTCTAAAGC  1044
      |   |||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCAGAGGAGTGAAAATTATTTACTATCTTGATCCTTTCTAAAGC  1050

seq1  AGAGCTATTAGGAAAGCTGGT-ATAATAAGAGGGTCTTCCAAGTTGGAAC  1093
      ||||||| ||||||||||||| |||||||||||||||  ||  |||||||
seq2  AGAGCTA-TAGGAAAGCTGGTAATAATAAGAGGGTCT--CAGTTTGGAAC  1097

seq1  AATATTCTATAAGTTGAAATATATTTCTGAAATGTTCTGGGGTGATGCAG  1143
      ||||||||||||| ||| |||| |||||| ||||||||  ||||||||||
seq2  AATATTCTATAAGGTGATATAT-TTTCTG-AATGTTCT--GGTGATGCAG  1143