BAC Information

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BAC

Clone NameB6Ng01-180O08
Chromosome5 (Build37)
Map Location 84,258,450 - 84,364,402
singlet/doubletdoublet
Overlap geneLOC231368
Upstream geneLOC100039434, Srd5a2l2, LOC100039608
Downstream geneEpha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180O08.bB6Ng01-180O08.g
ACCGA007209GA007210
length709950
definitionB6Ng01-180O08.b B6Ng01-180O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,258,450 - 84,259,153)(84,363,841 - 84,364,402)
sequence
gaattctcacctgaggaatactgaatggcagagaatcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctattatcattttttattttaatattgctgttcaatatggcaaac
aacaggattgattgcctttgggtttccccacattcctcatctctgtctca
cattatactttagaaacattggaattacagatgtttcttcttgtgtgagg
ctttacatggatactggggatccaaatgcacgtcctcaagctgtccaggc
aagccctttccagcttatccaggttactagcactctctagtacttcttaa
cccctttgtcataaatattacttcttctaacattttctcattctaattct
cgaaaatcttgtataaccaaatagaataatgcataaaaaaggctctacta
taatatgtgatatttacaaccctataaaaaattgaattaggatagataat
gatccatacatgacatgaaagaattcgttatatgtgtagtttaaagggga
tagaaggatggggaagaggagagaggaatggatggtaaagacaactaaag
gatatgtgaagcagcctcatggaaatccaaaaggtgctaatctaattaaa
attttaaaattgtgtgtgtgtgtgtgtgcgtgggtgtgttttttgtgtgt
gtgtgtgta

gaattctgaccttttattatttaaatatgtcatggaaaccagctgtttct
tttaaatcctgccttatagaggaattttaatctagtaacatggctgctct
gcgaagagatgacctagatctgtgtgatcccttggaatgcagacatacca
cacacctttaatccctattgctggaatacagacatgccaatagtacacat
cattgaggtaaatttagtttttagagtgaagcagccatcttgaggggaag
acgatgtgatgaatcagagaaagatctgaccagatgagtcagagatagga
taagccatctctcatgagaacagacaggaaagagaagctatttaagggac
gcatagggagatagagagtcaagatttgtgagtcagtgcagtgaagctga
gcttatttgtaagttcatgcaattcagtgcaggtcagcagaggcagttga
agccagagcataagaaggaaccagaggattagaacaaatttccagagtta
gtttgctgccaaatagagaaattcagtgaaaagataagcaaaagtcacat
tgaatcagtcatctgggaaggagttttgagacagatgacctgaattgaac
cagccagccagagttcagaaagaactataaagagtgagcttattcaagat
taagcctctgagatgtcacttatatttgaaaataaaagctaattttataa
gatttgaaaatgtataattgtaataaatatactgaatactccctaacctg
ttagaatatgtaaggagagataaacaacaataacaaaattgaaaaaaaaa
aaagcctgttctctattgaaaaaactactaaaacaaaacagaaaattgta
cagtcatagtttgcaggtaacacaaacaatgagaataataagaatgattt
ttttagtcttagatgatgttaacctaatataataaatgccaatttttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84258450_84259153
seq2: B6Ng01-180O08.b_44_751

seq1  GAATTCTCACCTGAGGAATACTGAATGGCAGAGAATCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACTGAATGGCAGAGAATCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTATTATCATTTTTTATTTTAATATTGCTGTTCAATATGGCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTATTATCATTTTTTATTTTAATATTGCTGTTCAATATGGCAAAC  150

seq1  AACAGGATTGATTGCCTTTGGGTTTCCCCACATTCCTCATCTCTGTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGATTGATTGCCTTTGGGTTTCCCCACATTCCTCATCTCTGTCTCA  200

seq1  CATTATACTTTAGAAACATTGGAATTACAGATGTTTCTTCTTGTGTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATACTTTAGAAACATTGGAATTACAGATGTTTCTTCTTGTGTGAGG  250

seq1  CTTTACATGGATACTGGGGATCCAAATGCACGTCCTCAAGCTGTCCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATGGATACTGGGGATCCAAATGCACGTCCTCAAGCTGTCCAGGC  300

seq1  AAGCCCTTTCCAGCTTATCCAGGTTACTAGCACTCTCTAGTACTTCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTTTCCAGCTTATCCAGGTTACTAGCACTCTCTAGTACTTCTTAA  350

seq1  CCCCTTTGTCATAAATATTACTTCTTCTAACATTTTCTCATTCTAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGTCATAAATATTACTTCTTCTAACATTTTCTCATTCTAATTCT  400

seq1  CGAAAATCTTGTATAACCAAATAGAATAATGCATAAAAAAGGCTCTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAATCTTGTATAACCAAATAGAATAATGCATAAAAAAGGCTCTACTA  450

seq1  TAATATGTGATATTTACAACCCTATAAAAAATTGAATTAGGATAGATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTGATATTTACAACCCTATAAAAAATTGAATTAGGATAGATAAT  500

seq1  GATCCATACATGACATGAAAGAATTCGTTATATGTGTAGTTTAAAGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATACATGACATGAAAGAATTCGTTATATGTGTAGTTTAAAGGGGA  550

seq1  TAGAAGGATGGGGAAGAGGAGAGAGGAATGGATGGTAAAGACAACTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGATGGGGAAGAGGAGAGAGGAATGGATGGTAAAGACAACTAAAG  600

seq1  GATATGTGAAGCAGCCTCATGGAAA-CCCAAAGGTGCTAATCTAATTAAA  649
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  GATATGTGAAGCAGCCTCATGGAAATCCAAAAGGTGCTAATCTAATTAAA  650

seq1  ATTTTAAAATTGTGTGTGTGTGTGTGTGCGTGTGTGTG---TGTGTGTGT  696
      |||||||||||||||||||||||||||||||| |||||   | |||||||
seq2  ATTTTAAAATTGTGTGTGTGTGTGTGTGCGTGGGTGTGTTTTTTGTGTGT  700

seq1  GTGTGTGT  704
      ||||||||
seq2  GTGTGTGT  708


seq1: chr5_84363841_84364402
seq2: B6Ng01-180O08.g_61_622 (reverse)

seq1  ATGACTGATTCAATGTGACTTTTGCTTATCTTTTCACTGAATTTCTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGATTCAATGTGACTTTTGCTTATCTTTTCACTGAATTTCTCTAT  50

seq1  TTGGCAGCAAACTAACTCTGGAAATTTGTTCTAATCCTCTGGTTCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGCAAACTAACTCTGGAAATTTGTTCTAATCCTCTGGTTCCTTCT  100

seq1  TATGCTCTGGCTTCAACTGCCTCTGCTGACCTGCACTGAATTGCATGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCTGGCTTCAACTGCCTCTGCTGACCTGCACTGAATTGCATGAAC  150

seq1  TTACAAATAAGCTCAGCTTCACTGCACTGACTCACAAATCTTGACTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATAAGCTCAGCTTCACTGCACTGACTCACAAATCTTGACTCTCT  200

seq1  ATCTCCCTATGCGTCCCTTAAATAGCTTCTCTTTCCTGTCTGTTCTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTATGCGTCCCTTAAATAGCTTCTCTTTCCTGTCTGTTCTCATG  250

seq1  AGAGATGGCTTATCCTATCTCTGACTCATCTGGTCAGATCTTTCTCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTTATCCTATCTCTGACTCATCTGGTCAGATCTTTCTCTGAT  300

seq1  TCATCACATCGTCTTCCCCTCAAGATGGCTGCTTCACTCTAAAAACTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACATCGTCTTCCCCTCAAGATGGCTGCTTCACTCTAAAAACTAAA  350

seq1  TTTACCTCAATGATGTGTACTATTGGCATGTCTGTATTCCAGCAATAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTCAATGATGTGTACTATTGGCATGTCTGTATTCCAGCAATAGGG  400

seq1  ATTAAAGGTGTGTGGTATGTCTGCATTCCAAGGGATCACACAGATCTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTGTGTGGTATGTCTGCATTCCAAGGGATCACACAGATCTAGG  450

seq1  TCATCTCTTCGCAGAGCAGCCATGTTACTAGATTAAAATTCCTCTATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTTCGCAGAGCAGCCATGTTACTAGATTAAAATTCCTCTATAAG  500

seq1  GCAGGATTTAAAAGAAACAGCTGGTTTCCATGACATATTTAAATAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATTTAAAAGAAACAGCTGGTTTCCATGACATATTTAAATAATAAA  550

seq1  AGGTCAGAATTC  562
      ||||||||||||
seq2  AGGTCAGAATTC  562


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