BAC Information

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BAC

Clone NameB6Ng01-181D19
Chromosome5 (Build37)
Map Location 27,598,362 - 27,599,378
singlet/doubletsinglet
Overlap geneDpp6
Upstream gene4930584F24Rik, B930011P16Rik
Downstream geneSpeer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181D19.bB6Ng01-181D19.g
ACCGA007453GA007454
length1,0211,203
definitionB6Ng01-181D19.b B6Ng01-181D19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttccccaaaggaaatcagccgagactggtacaggaagtgacag
tcctttgctggtgtctccaggatgcctttgcagagttcagagcaggtggg
gcacagacctaagtccacagtatagacaggagaaggtgaagctcagaacg
gttgaatgcatcatgtagttggtgaaccgcagattcagaacacacccata
tttaattttgttttaagtcaaacagttctgagtgagaggtagtaaaaaat
agtatgttcagtaattaacataaaaattgatgttacctggaaactgcaaa
acagacaaagacatcagagatatggatggatgaggaagcccctgttgttg
tctggcatgtggcttgtgggagggcacctgcttagcctgtgggaggcact
gggcttatccctgccaaaggcacaagtaaagtatctatatggtatgaact
gaagaaggtatgtgttcaactctgggtatctggggcactactgtggctcc
tggtgtccttagctcctgggaagacaaatgatttctcctccttattttcc
ctagtcctgtggacaattgcggtttgtaacagtttttcatagtcaagtaa
ttatgtaacgagatgcttttgaaacaaagaagacagagagatagaatgat
ggagtttctcccagcctctaaaagtaaccaagtactaatagatcatgcat
gctttgggaatgtcttctaattttacttgcaaacaacttcatgaatggta
gttatttcacaaatgtggggagttgggcaagtgggggtgagaagggttcc
aggtcaccacctgtacagatcagcaggggtgcaaggactaagatgtgtgg
atgcttcatctgtttccaagtttaaactgaaccacacctacgtgggtcat
gaggtgactggactgaaggtttctttttgagagtctgattagagctatca
acctaacatggatataccagaacatttaccacccctttcctatctacaag
tggattgtagggttgcccata
gaattcctgatctttccaagacttttatcatgaatgggtgttagatcttg
tcgaatgctttttccacatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacgttgatggatttctgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggattttttt
gcatctatattcataagggaaattggtctgaagttctctatctttattgg
atctttctgtggtttaggtatcagagtaattgtggcttcatagaatgaat
tgggtagagttccatctacttctattttgtggaatagtttgtgcagaact
ggaattagatcttctttgaaggtctggttgaactctgcactaaacccatc
tggtcctgggctttttttggctgggagactattaatgactgcttctattt
cttttggggatatgggactgtttagatcgttaacttgatcctgatttaac
tttggtacctggtatctgtctagaaatttgtccatttcatccaggttttc
cagttttgttgagtatatagccttttgtagaaggatctgatggtgttttg
gatttctccaggatctgttgttatgtctcccttttcatttctgattttgt
tataaatctaagtggatcaaggaacttcacataaaaccagagacactgaa
acttatagaggagaaagtggggaaaagcctcgaagatatgggcataggag
aaaaattcctgaatagaacagcaatggcttgtgctgtaagatcgagaatc
aacaaatgggacctcatgaactgcaagcttctgcaaggcaaaagatactt
gtcaataagacaaaaaggccaccaatagattgggaaaggattcttttacc
ttattcttaaatcagataggggactaatatcccatatattataagatacc
tgaagagggtggactccagaaatcaataccccattaaaaaatggggctcc
agattgacagatctcaccttggaggaataccgatgccgagaatgcactga
ataaatgtttcacatcttatttactaggaaatgcaaatctacacccttga
atccactcaacatgtcgaatgcctaaactcaaattcagggtgtacacgac
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_27598362_27599378
seq2: B6Ng01-181D19.b_42_1062

seq1  GAATTCTTTCCCCAAAGGAAATCAGCCGAGACTGGTACAGGAAGTGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCCAAAGGAAATCAGCCGAGACTGGTACAGGAAGTGACAG  50

seq1  TCCTTTGCTGGTGTCTCCAGGATGCCTTTGCAGAGTTCAGAGCAGGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCTGGTGTCTCCAGGATGCCTTTGCAGAGTTCAGAGCAGGTGGG  100

seq1  GCACAGACCTAAGTCCACAGTATAGACAGGAGAAGGTGAAGCTCAGAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACCTAAGTCCACAGTATAGACAGGAGAAGGTGAAGCTCAGAACG  150

seq1  GTTGAATGCATCATGTAGTTGGTGAACCGCAGATTCAGAACACACCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATGCATCATGTAGTTGGTGAACCGCAGATTCAGAACACACCCATA  200

seq1  TTTAATTTTGTTTTAAGTCAAACAGTTCTGAGTGAGAGGTAGTAAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTGTTTTAAGTCAAACAGTTCTGAGTGAGAGGTAGTAAAAAAT  250

seq1  AGTATGTTCAGTAATTAACATAAAAATTGATGTTACCTGGAAACTGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTCAGTAATTAACATAAAAATTGATGTTACCTGGAAACTGCAAA  300

seq1  ACAGACAAAGACATCAGAGATATGGATGGATGAGGAAGCCCCTGTTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAAGACATCAGAGATATGGATGGATGAGGAAGCCCCTGTTGTTG  350

seq1  TCTGGCATGTGGCTTGTGGGAGGGCACCTGCTTAGCCTGTGGGAGGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATGTGGCTTGTGGGAGGGCACCTGCTTAGCCTGTGGGAGGCACT  400

seq1  GGGCTTATCCCTGCCAAAGGCACAAGTAAAGTATCTATATGGTATGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTATCCCTGCCAAAGGCACAAGTAAAGTATCTATATGGTATGAACT  450

seq1  GAAGAAGGTATGTGTTCAACTCTGGGTATCTGGGGCACTACTGTGGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGTATGTGTTCAACTCTGGGTATCTGGGGCACTACTGTGGCTCC  500

seq1  TGGTGTCCTTAGCTCCTGGGAAGACAAATGATTTCTCCTCCTTATTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCCTTAGCTCCTGGGAAGACAAATGATTTCTCCTCCTTATTTTCC  550

seq1  CTAGTCCTGTGGACAATTGCGGTTTGTAACAGTTTTTCATAGTCAAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCTGTGGACAATTGCGGTTTGTAACAGTTTTTCATAGTCAAGTAA  600

seq1  TTATGTAACGAGATGCTTTTGAAACAAAGAAGACAGAGAGATAGAATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAACGAGATGCTTTTGAAACAAAGAAGACAGAGAGATAGAATGAT  650

seq1  GGAGTTTCTCCCAGCCTCTAAAAGTAACCAAGTACTAATAGATCATGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTCTCCCAGCCTCTAAAAGTAACCAAGTACTAATAGATCATGCAT  700

seq1  GCTTTGGGAATGTCTTCTAATTTTACTTGCAAACAACTTCATGAATGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGAATGTCTTCTAATTTTACTTGCAAACAACTTCATGAATGGTA  750

seq1  GTTATTTCACAAATGTGGGGAGTTGGGCAAGTGGGGGTGAGAAGGGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCACAAATGTGGGGAGTTGGGCAAGTGGGGGTGAGAAGGGTTCC  800

seq1  AGGTCACCACCTGTACAGATCAGCAGGGGTGCAAGGACTAAGATGTGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACCACCTGTACAGATCAGCAGGGGTGCAAGGACTAAGATGTGTGG  850

seq1  ATGCTTCATCTGTTCCCAAGTTTAAACTGAACCACACCTACGTGGGTCAT  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGCTTCATCTGTTTCCAAGTTTAAACTGAACCACACCTACGTGGGTCAT  900

seq1  GA-GTGACTGGACTGAAGGTTTC-TTTTGAGAGTCTGATAAGAGCCATCA  948
      || |||||||||||||||||||| ||||||||||||||| ||||| ||||
seq2  GAGGTGACTGGACTGAAGGTTTCTTTTTGAGAGTCTGATTAGAGCTATCA  950

seq1  ACCTAACATGGATATAACCAGAACA-TTACCA-CCCTTTCCTATCTACAA  996
      ||||||||||||||| ||||||||| |||||| |||||||||||||||||
seq2  ACCTAACATGGATAT-ACCAGAACATTTACCACCCCTTTCCTATCTACAA  999

seq1  AGTGATTGTA-GGTTGCACATA  1017
         ||||||| |||||| ||||
seq2  GTGGATTGTAGGGTTGCCCATA  1021