BAC Information

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BAC

Clone NameB6Ng01-182D12
Chromosome5 (Build37)16 (Build37)
Map Location 43,264,463 - 43,264,54083,324,353 - 83,324,903
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040588, EG636612
Downstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182D12.bB6Ng01-182D12.g
ACCGA008174GA008175
length300841
definitionB6Ng01-182D12.b B6Ng01-182D12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,264,463 - 43,264,540)(83,324,353 - 83,324,903)
sequence
tcaattctgaatatctatgctccaaatacaagggcagccacatttattaa
aaaaaatttagtaaagctcaaagcacatattgcacctcacacaataatag
tgggagacttcaacaccccactctcaccaatggacagatcctggaaacag
aaactaaaccgagacacatggacactaacaaacattatgaaacaaatgga
tttaattgatagctacagaacttcttcccttctttccttctttccttctt
tccttctttccttctttccttctttccttctttccttccttccttccttc


gaattcctaagttttgcgtttctagttttatatcaatttggattttcttt
agtgatttctccttccacatttatgtctttagtgttttattcattctctc
ctccatttatgtatttttattcatcagcacattcataatctcttaaggaa
cttgaatataatcctaaaagatattttgaaaattttgtcttatgcttcgg
gtatattgaatttctcaggtcctactcttgtagggtttggggctttacgc
gatacttattgatctggctgtctttttatgcaggcatatgggtttgggat
gactatacatctaagtgttgatatctggtcttgcctgtgttgtgtgggtg
ttttattccttggtttcattgcccttggacatctatgatctctctggaga
atgtgatggaacctggtttcttccacaggagcttacacatggctgctgtg
ttcctgtatagactgggctcccaggtatttggagatgaaagggaagaata
tggaagatcaggtagggtatgagaaaaatggttcacagtaaggagaaagg
ctgagtctaccaggaagacctgtgaagattcgaaagaaatagaagagaga
gaaagtggggaatggcagatgttctgttaaagggctaatgttgagatagg
gggactggaattggaggacatcagagaaaagtgaagtttagctacttgct
tctggggctgatgtggtctcttcttggagatggttaccgtgcaggaggga
ggcttttaggagaagatctgcctttatctcctgagaatgggaacctatca
gacaccatgatttgaagaaaatgattgggaggagggtatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_43264463_43264540
seq2: B6Ng01-182D12.b_278_346 (reverse)

seq1  GAAGGAAGGAAGGAAGGAAA-AAGGAAAGGAAAGGAAAGGAAAGGAAAGG  49
      |||||||||||||||||||| ||||||||  ||||||||  |||||||| 
seq2  GAAGGAAGGAAGGAAGGAAAGAAGGAAAG--AAGGAAAG--AAGGAAAG-  45

seq1  AAAGGAAAGGAAAGGAAAGGAAAGGAAAG  78
       ||||||||  ||||||||  ||||||||
seq2  -AAGGAAAG--AAGGAAAG--AAGGAAAG  69


seq1: chr16_83324353_83324903
seq2: B6Ng01-182D12.g_349_903 (reverse)

seq1  CCATACCCTCCTCCCATTC-TTTTCTTCAAATCATGGTGTCTGATAGGTT  49
      |||||||||||||||| || ||||||||||||||||||||||||||||||
seq2  CCATACCCTCCTCCCAATCATTTTCTTCAAATCATGGTGTCTGATAGGTT  50

seq1  CCCATTCTCAGGAGATAAA-GCAGATCTTCTCCT-AAAGCCTCCCTCCTG  97
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  CCCATTCTCAGGAGATAAAGGCAGATCTTCTCCTAAAAGCCTCCCTCCTG  100

seq1  CACGGTAACCATCTCCAAGAAGAGACCACATCAGCCCCAGAAGCAAGTAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTAACCATCTCCAAGAAGAGACCACATCAGCCCCAGAAGCAAGTAG  150

seq1  CTAAACTTCAC-TTTCTCTGATGTCCTCCAATTCCAGTCCCCCTATCTCA  196
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTCACTTTTCTCTGATGTCCTCCAATTCCAGTCCCCCTATCTCA  200

seq1  ACATTAGCCCTTTAACAGAACATCTGCCATTCCCCACTTTCTCTCTCTTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGCCCTTTAACAGAACATCTGCCATTCCCCACTTTCTCTCTCTTC  250

seq1  TATTTCTTTCGAATCTTCACAGGTCTTCCTGGTAGACTCAGCCTTTCTCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTCGAATCTTCACAGGTCTTCCTGGTAGACTCAGCCTTTCTCC  300

seq1  TTACTGTGAACCATTTTTCTCATACCCTACCTGATCTTCCATATTCTTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGAACCATTTTTCTCATACCCTACCTGATCTTCCATATTCTTCC  350

seq1  CTTTCATCTCCAAATACCTGGGAGCCCAGTCTATACAGGAACACAGCAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCTCCAAATACCTGGGAGCCCAGTCTATACAGGAACACAGCAGC  400

seq1  CATGTGTAAGCTCCTGTGGAAGAAACCAGGTTCCATCACATTCTCCAGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTAAGCTCCTGTGGAAGAAACCAGGTTCCATCACATTCTCCAGAG  450

seq1  AGATCATAGATGTCCAAGGGCAATGAAACCAAGGAATAAAACACCCACAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATAGATGTCCAAGGGCAATGAAACCAAGGAATAAAACACCCACAC  500

seq1  AACACAGGCAAGACCAGATATCAACACTTAGATGTATAGTCATCCCAAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGCAAGACCAGATATCAACACTTAGATGTATAGTCATCCCAAAC  550

seq1  CCATA  551
      |||||
seq2  CCATA  555


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