BAC Information

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BAC

Clone NameB6Ng01-183J16
Chromosome5 (Build37)
Map Location 53,333,929 - 53,544,515
singlet/doubletdoublet
Overlap geneSlc34a2, 2310045A20Rik
Upstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4
Downstream gene1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183J16.bB6Ng01-183J16.g
ACCGA009186GA009187
length753484
definitionB6Ng01-183J16.b B6Ng01-183J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,333,929 - 53,334,678)(53,544,032 - 53,544,515)
sequence
gaattcattagagcagctgatggggtcacagtggtcaactgtaggctgga
gggctaggaagcctcagaataatgaggtcctgtgcttcagcaaacccctc
aaagatctttgaaaatcgttgctgcaagtccatatttagaggctgaagcc
tacagagtccaggggcgacaggaggcagcggtaggaaatgcagcccctag
ggaagggagatgaaactgtgaggagggagggtctcagggaggccagttag
gaggctcccgaggatcatgtgagaggagcaggaggtcagaggggagttat
ctgaggtcacagctaacttctggggcttggccatcttctaagcttcaagc
ttgtggtgatggagggcttgtggtttggaatagagtggtcaagggctgag
ttttggccactgacagtttagggtcctatttgatgccctacagttgaatt
ctaagtgggcatcaagtatgtataatcagaagctcaatggacaggccaag
gctagaccacacactatggtggccttggcaaatgctggtcttgaaggctc
taagtgcatgagatggccccagagagatgacatccagaaggattcctggc
aaagaaagccaagccaccaagagccatgtgggtttgttttgttctgtttg
tttttacttaccccatatagcccaggctgactttggggctcttggtaatc
ctcctgcctcatcctcctgagagctgggggtttcaagtgtgcacactaga
taa
ttagattagactcactgatggcttgtttccggactgagaataaaaggctg
ccggtgaaggtgtctacagaggaatagcaggaaaacctactcggacagca
cagacctaggtccaggagaggggatagtgggctgggtggcttcagggaca
cagaggtgtgtgagatggttcacgttgataatgcaactggtttgctgtga
gggttaagagggtttccccccatctccataaagggccagctggtgagtat
ttcaagctttcactgtatggtgaggttttttttttgttttttgttttttt
tttttgtttttgtttttttttttgtttttttttgttttttttttttggtt
gatgctgtttttttcttttttctttctttcttttttttttttttttttct
gcccctgctggtatttttgatataaaaaagcatctgggtccgtgtagcca
cagcaattatgaagcaccatgacagcatttgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_53333929_53334678
seq2: B6Ng01-183J16.b_48_800

seq1  GAATTCATTAGAGCAGCTGATGGGGTCACAGTGGTCAACTGTAGGCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGAGCAGCTGATGGGGTCACAGTGGTCAACTGTAGGCTGGA  50

seq1  GGGCTAGGAAGCCTCAGAATAATGAGGTCCTGTGCTTCAGCAAACCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGAAGCCTCAGAATAATGAGGTCCTGTGCTTCAGCAAACCCCTC  100

seq1  AAAGATCTTTGAAAATCGTTGCTGCAAGTCCATATTTAGAGGCTGAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTTTGAAAATCGTTGCTGCAAGTCCATATTTAGAGGCTGAAGCC  150

seq1  TACAGAGTCCAGGGGCGACAGGAGGCAGCGGTAGGAAATGCAGCCCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTCCAGGGGCGACAGGAGGCAGCGGTAGGAAATGCAGCCCCTAG  200

seq1  GGAAGGGAGATGAAACTGTGAGGAGGGAGGGTCTCAGGGAGGCCAGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGAGATGAAACTGTGAGGAGGGAGGGTCTCAGGGAGGCCAGTTAG  250

seq1  GAGGCTCCCGAGGATCATGTGAGAGGAGCAGGAGGTCAGAGGGGAGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCCCGAGGATCATGTGAGAGGAGCAGGAGGTCAGAGGGGAGTTAT  300

seq1  CTGAGGTCACAGCTAACTTCTGGGGCTTGGCCATCTTCTAAGCTTCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCACAGCTAACTTCTGGGGCTTGGCCATCTTCTAAGCTTCAAGC  350

seq1  TTGTGGTGATGGAGGGCTTGTGGTTTGGAATAGAGTGGTCAAGGGCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGATGGAGGGCTTGTGGTTTGGAATAGAGTGGTCAAGGGCTGAG  400

seq1  TTTTGGCCACTGACAGTTTAGGGTCCTATTTGATGCCCTACAGTTGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCCACTGACAGTTTAGGGTCCTATTTGATGCCCTACAGTTGAATT  450

seq1  CTAAGTGGGCATCAAGTATGTATAATCAGAAGCTCAATGGACAGGCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGGGCATCAAGTATGTATAATCAGAAGCTCAATGGACAGGCCAAG  500

seq1  GCTAGACCACACACTATGGTGGCCTTGGCAAATGCTGGTCTTGAAGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACCACACACTATGGTGGCCTTGGCAAATGCTGGTCTTGAAGGCTC  550

seq1  TAAGTGCATGAGATGGCCCCAGAGAGATGACATCCAGAAGGATTCCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCATGAGATGGCCCCAGAGAGATGACATCCAGAAGGATTCCTGGC  600

seq1  AAAGAAAGCCAAGCCACCAAGAGCCATGTGGGTTTGTTTTGTTCTGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGCCAAGCCACCAAGAGCCATGTGGGTTTGTTTTGTTCTGTTTG  650

seq1  -TTTTACTTACCCCATATAGCCCAGGCTGACTTT-GGGCTCTTGGTAATC  698
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTTTACTTACCCCATATAGCCCAGGCTGACTTTGGGGCTCTTGGTAATC  700

seq1  CTCCTGCCTCATCCTCCTGAGAGCT-GGGGTTTCAGGTGTGCACACTAGA  747
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  CTCCTGCCTCATCCTCCTGAGAGCTGGGGGTTTCAAGTGTGCACACTAGA  750

seq1  TAA  750
      |||
seq2  TAA  753

seq1: chr5_53544032_53544515
seq2: B6Ng01-183J16.g_75_558 (reverse)

seq1  AGGCAAATGCTGTCATGGTGCTTCATACTGGCTGTGGCTACACGGACCCA  50
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  AGGCAAATGCTGTCATGGTGCTTCATAATTGCTGTGGCTACACGGACCCA  50

seq1  GATGCACGTTTATTTCCACATTTCCAGCAGGTGCAAAAAAAAAAAAAAAA  100
      |||||   ||||| || | | | |||||||| ||| ||||||||||||||
seq2  GATGCTTTTTTATATCAAAAATACCAGCAGGGGCAGAAAAAAAAAAAAAA  100

seq1  AAAAGAAAGAAAGAAAAAAGAAAAAAACAGCAACAACCAAAAAAAAAAAA  150
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAAGAAAGAAAGAAAAAAGAAAAAAACAGCATCAACCAAAAAAAAAAAA  150

seq1  CAAAAAAAAACAAAAAAAAAAACAAAAACAAAAAAAAAAAACAAAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAACAAAAAAAAAAACAAAAACAAAAAAAAAAAACAAAAAACA  200

seq1  AAAAAAAAACCTCACCATACAGTGAAAGCTTGAAATACTCACCAGCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACCTCACCATACAGTGAAAGCTTGAAATACTCACCAGCTGGC  250

seq1  CCTTTATGGAGATGGGGGGAAACCCTCTTAACCCTCACAGCAAACCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGGAGATGGGGGGAAACCCTCTTAACCCTCACAGCAAACCAGTT  300

seq1  GCATTATCAACGTGAACCATCTCACACACCTCTGTGTCCCTGAAGCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATCAACGTGAACCATCTCACACACCTCTGTGTCCCTGAAGCCACC  350

seq1  CAGCCCACTATCCCCTCTCCTGGACCTAGGTCTGTGCTGTCCGAGTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCACTATCCCCTCTCCTGGACCTAGGTCTGTGCTGTCCGAGTAGGT  400

seq1  TTTCCTGCTATTCCTCTGTAGACACCTTCACCGGCAGCCTTTTATTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCTATTCCTCTGTAGACACCTTCACCGGCAGCCTTTTATTCTCA  450

seq1  GTCCGGAAACAAGCCATCAGTGAGTCTAATCTAA  484
      ||||||||||||||||||||||||||||||||||
seq2  GTCCGGAAACAAGCCATCAGTGAGTCTAATCTAA  484