BAC Information

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BAC

Clone NameB6Ng01-185C19
Chromosome5 (Build37)
Map Location 100,004,064 - 100,128,761
singlet/doubletdoublet
Overlap geneA930011G23Rik
Upstream gene1700007G11Rik, Bmp3, Prkg2, LOC100041680, Rasgef1b
Downstream geneLOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185C19.bB6Ng01-185C19.g
ACCGA010358GA010359
length1,183919
definitionB6Ng01-185C19.b B6Ng01-185C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,004,064 - 100,005,230)(100,128,206 - 100,128,761)
sequence
gaattcattcggtcactttttcaaccatagtatgttctttgactcttttc
atcctcagccatacagaaaaatgcttgtcttacggtttctgtgactataa
agagacgccgtgaccacattgactcttgtaaatgaaaacatctcgctggg
cctggcttacagttcggaggtttagtccattatcatcatgaacacccacc
taaaacaaatttgattttgacttttgtcaagttgaagactgctttctggc
tctctgatgtcgtatatgtgatgtctctaatttttttttaaagtgtagct
ggttccagctgttgacactatgccttatttcattgggcatttcccacatg
tcctgtaaatcaccacaccaaccttggacctctggacaaaccagggacac
cttcaagaccttgtatgcacactaacaggttctctctgcctagagacccc
atcttttctcttctggcaaagtctggcttccttctacagagatttttcct
aactttccccaaatgctgtcagcaatttccatctctctaggttagtccta
aagtctactattctcacacatttataattctttatgattaagaagaatcc
tgaaaaccttgctagctagacttgaaaactaactgggtgctgatagaaat
gaggcaggcacagcctagcacatggtggctcatcatgtactgtttgataa
aataaggagtcactggtttaataggcaaaggttggttagagatactgtca
gcatgcctctatatgacagctgaagccatggttatgatttgagaatgcct
cggtaaatacataattataagaaatgatagaatgagacaaatcctggcaa
acaccaatattatttaaaattaaaaatgagacaagctaaaggaactgaga
caaagcagacactttagtgggagtagagccaaataagcatacagttcata
ccagctagcctaggatagcacttcccggaaggaaaccctgcccagtctgc
taaattgagactgaaaccccttcttgtctgttccacctccacgccaccac
cttgcttatccacggaaatgctttccactgtccccctctctcttgaaacc
tccgcctggatttcttccctcaagcaggactctctgttcccactgacgga
tacttctacattcgcaccgtgcacagcaatgta
gaattctcatatctccctaccctgccctggagcagacctactgtattcag
ggttgaattcaaccccttcagaagggaacctcggtgatgggggagaacct
ttaagaggcggggcctcgtgtgggggtaataaggtcatggaggactctgt
ccccttatttctgcttccccagcaagcagtttgctctggaaaccataggt
ctgtttaattttggcaggagcggtcagaaatgtgagtctacagaccttgc
tcttttaagctggtcaccggagtcatttaattaaactgatggctagctgc
ctgcagtgatttttaaaaaccgttctctacatgtttgtacaaatgttgag
actaatcctttgtgatttgtttctctgtttttatatttaaatatagggca
atcatatatctccgggaatttctatatgtgctatggtaactttgggcctt
agtgcgggatgactggctacaccatttctttccactgtctctctttttat
tggtttatttatttatatttcaaatgttgtcctcccttcctggcctcctc
ccctcacccccccccccgcctctatgagggtgcttacccacccactccca
cctcacgtcacctccctagcacttccctacactggggcatagagcctcca
cagaaccaagggcctctcctcccaataatgtccgacaagtccatcctctg
ctacatatgaggctggagctatgggtccctccatgtgtactcttcggttg
gtggtttagtccctgggagctctggggagtctggttgattgatattgttg
atcttccgatggtgttgcaatctccctaactcttccattggaatccctgc
actttagtctgatggttggctgtgagcatccacatctgtattggtcagac
attggcagagtcctctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_100004064_100005230
seq2: B6Ng01-185C19.b_41_1223

seq1  GAATTCATTCGGTCACTTTTTCAACCATAGTATGTTCTTTGACTCTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCGGTCACTTTTTCAACCATAGTATGTTCTTTGACTCTTTTC  50

seq1  ATCCTCAGCCATACAGAAAAATGCTTGTCTTACGGTTTCTGTGACTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGCCATACAGAAAAATGCTTGTCTTACGGTTTCTGTGACTATAA  100

seq1  AGAGACGCCGTGACCACATTGACTCTTGTAAATGAAAACATCTCGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACGCCGTGACCACATTGACTCTTGTAAATGAAAACATCTCGCTGGG  150

seq1  CCTGGCTTACAGTTCGGAGGTTTAGTCCATTATCATCATGAACACCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTACAGTTCGGAGGTTTAGTCCATTATCATCATGAACACCCACC  200

seq1  TAAAACAAATTTGATTTTGACTTTTGTCAAGTTGAAGACTGCTTTCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAATTTGATTTTGACTTTTGTCAAGTTGAAGACTGCTTTCTGGC  250

seq1  TCTCTGATGTCGTATATGTGATGTCTCTAATTTTTTTTTAAAGTGTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATGTCGTATATGTGATGTCTCTAATTTTTTTTTAAAGTGTAGCT  300

seq1  GGTTCCAGCTGTTGACACTATGCCTTATTTCATTGGGCATTTCCCACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAGCTGTTGACACTATGCCTTATTTCATTGGGCATTTCCCACATG  350

seq1  TCCTGTAAATCACCACACCAACCTTGGACCTCTGGACAAACCAGGGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAAATCACCACACCAACCTTGGACCTCTGGACAAACCAGGGACAC  400

seq1  CTTCAAGACCTTGTATGCACACTAACAGGTTCTCTCTGCCTAGAGACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGACCTTGTATGCACACTAACAGGTTCTCTCTGCCTAGAGACCCC  450

seq1  ATCTTTTCTCTTCTGGCAAAGTCTGGCTTCCTTCTACAGAGATTTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCTCTTCTGGCAAAGTCTGGCTTCCTTCTACAGAGATTTTTCCT  500

seq1  AACTTTCCCCAAATGCTGTCAGCAATTTCCATCTCTCTAGGTTAGTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCCCAAATGCTGTCAGCAATTTCCATCTCTCTAGGTTAGTCCTA  550

seq1  AAGTCTACTATTCTCACACATTTATAATTCTTTATGATTAAGAAGAATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTACTATTCTCACACATTTATAATTCTTTATGATTAAGAAGAATCC  600

seq1  TGAAAACCTTGCTAGCTAGACTTGAAAACTAACTGGGTGCTGATAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCTTGCTAGCTAGACTTGAAAACTAACTGGGTGCTGATAGAAAT  650

seq1  GAGGCAGGCACAGCCTAGCACATGGTGGCTCATCATGTACTGTTTGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCACAGCCTAGCACATGGTGGCTCATCATGTACTGTTTGATAA  700

seq1  AATAAGGAGTCACTGGTTTAATAGGCAAAGGTTGGTTAGAGATACTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGAGTCACTGGTTTAATAGGCAAAGGTTGGTTAGAGATACTGTCA  750

seq1  GCATGCCTCTATATGACAGCTGAAGCCATGGTTATGA-TTGAGAATGCCT  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCATGCCTCTATATGACAGCTGAAGCCATGGTTATGATTTGAGAATGCCT  800

seq1  CGGTAAATACATAATTATAAGAAATGATAGAATGAGACAAATCCTGGCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAAATACATAATTATAAGAAATGATAGAATGAGACAAATCCTGGCAA  850

seq1  ACACCAATATTAATTAAAATTAAAAATGAGACAAGCTAAAGGAACTGAGA  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACACCAATATTATTTAAAATTAAAAATGAGACAAGCTAAAGGAACTGAGA  900

seq1  CAAAGCAGACACTTTAGTGGGAGTAGAGCCAAATAAGCATACAG-TCATA  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAAGCAGACACTTTAGTGGGAGTAGAGCCAAATAAGCATACAGTTCATA  950

seq1  CCAGCTAGCCTAGGATAGCACTT-CCGGAAGGAAACCCTGCCCAGTCTGC  997
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCAGCTAGCCTAGGATAGCACTTCCCGGAAGGAAACCCTGCCCAGTCTGC  1000

seq1  TAAATTGAGACTGAAA-CCCTTC-TGTCTGTTTCCACCT-CACGCCAC--  1042
      |||||||||||||||| |||||| |||||| |||||||| ||||||||  
seq2  TAAATTGAGACTGAAACCCCTTCTTGTCTG-TTCCACCTCCACGCCACCA  1049

seq1  ACTTGCTTAT-CACGG-AATGCTT--CACTGT---CCACTCTC-TGAAAC  1084
       ||||||||| ||||| |||||||  ||||||   || ||||| ||||||
seq2  CCTTGCTTATCCACGGAAATGCTTTCCACTGTCCCCCTCTCTCTTGAAAC  1099

seq1  --TCGCCTGGATTTCTT-CCTCAAAGGCAAGGACTCT---GTCCCACTGA  1128
         |||||||||||||| ||||||  || ||||||||    |||||||||
seq2  CTCCGCCTGGATTTCTTCCCTCAA--GC-AGGACTCTCTGTTCCCACTGA  1146

seq1  CAGAATAACTTCTACATTTGGCACCGTGCACAGC-ATGTA  1167
      | ||   ||||||||| || |||||||||||||| |||||
seq2  CGGA--TACTTCTACA-TTCGCACCGTGCACAGCAATGTA  1183

seq1: chr5_100128206_100128761
seq2: B6Ng01-185C19.g_65_620 (reverse)

seq1  TGAGGGGAGGAGGCCAGGAAGGGAGGACAACATTTGAAATATAAATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGAGGAGGCCAGGAAGGGAGGACAACATTTGAAATATAAATAAAT  50

seq1  AAACCAATAAAAAGAGAGACAGTGGAAAGAAATGGTGTAGCCAGTCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATAAAAAGAGAGACAGTGGAAAGAAATGGTGTAGCCAGTCATCC  100

seq1  CGCACTAAGGCCCAAAGTTACCATAGCACATATAGAAATTCCCGGAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTAAGGCCCAAAGTTACCATAGCACATATAGAAATTCCCGGAGATA  150

seq1  TATGATTGCCCTATATTTAAATATAAAAACAGAGAAACAAATCACAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGCCCTATATTTAAATATAAAAACAGAGAAACAAATCACAAAGG  200

seq1  ATTAGTCTCAACATTTGTACAAACATGTAGAGAACGGTTTTTAAAAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCTCAACATTTGTACAAACATGTAGAGAACGGTTTTTAAAAATCA  250

seq1  CTGCAGGCAGCTAGCCATCAGTTTAATTAAATGACTCCGGTGACCAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCAGCTAGCCATCAGTTTAATTAAATGACTCCGGTGACCAGCTT  300

seq1  AAAAGAGCAAGGTCTGTAGACTCACATTTCTGACCGCTCCTGCCAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCAAGGTCTGTAGACTCACATTTCTGACCGCTCCTGCCAAAATT  350

seq1  AAACAGACCTATGGTTTCCAGAGCAAACTGCTTGCTGGGGAAGCAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACCTATGGTTTCCAGAGCAAACTGCTTGCTGGGGAAGCAGAAAT  400

seq1  AAGGGGACAGAGTCCTCCATGACCTTATTACCCCCACACGAGGCCCCGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACAGAGTCCTCCATGACCTTATTACCCCCACACGAGGCCCCGCC  450

seq1  TCTTAAAGGTTCTCCCCCATCACCGAGGTTCCCTTCTGAAGGGGTTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGGTTCTCCCCCATCACCGAGGTTCCCTTCTGAAGGGGTTGAAT  500

seq1  TCAACCCTGAATACAGTAGGTCTGCTCCAGGGCAGGGTAGGGAGATATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCTGAATACAGTAGGTCTGCTCCAGGGCAGGGTAGGGAGATATGA  550

seq1  GAATTC  556
      ||||||
seq2  GAATTC  556