BAC Information

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BAC

Clone NameB6Ng01-186A09
Chromosome5 (Build37)
Map Location 83,521,463 - 83,725,246
singlet/doubletdoublet
Overlap geneSrd5a2l2
Upstream geneEG433912, LOC100039434
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186A09.bB6Ng01-186A09.g
ACCGA010978GA010979
length1,115952
definitionB6Ng01-186A09.b B6Ng01-186A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,521,463 - 83,522,569)(83,724,298 - 83,725,246)
sequence
gaattctagaaattcgtaactacaaacggaattgcttgtaatgataaaag
gaaagaatacaacactttccctaattttccttaatgtggcagagattaat
atttacataaatgcctaaaataacaagcaacacaagctttttaaaaaatt
aaatctgattacaattgcctcattatctatttgatgactgatgtctctgt
gattcagaaacaagcataacataagagaaatcatgaaaaatatataccaa
gtagcacatgacatcattcctgtgagtctttactttttattactgccctg
ctctcgatgtcagtgtttttagcataggtactgaacttttttcatcatga
ttaacacagacagctatcatactgcaacataaagctgatttttgaacatc
gtgagaagtgatgtaagtcccttgcattttcaggatggtattgacctatt
gaagaggaagcagtaacaatgtaaaagacagggaataaagaggatttttt
ttttttttttttttttttttttgtaaatgacgtgactactgcaatcatat
actcatgtcagatctggctatctgtacaagataataccagccatagttct
agcataaagatgatacttcatagcttcccactattctggggcaggacaaa
acaactaggggatagagaatcacattttgagagtgtgaaattggtaagtt
tcttatgctctagcagatggccccacacatgtagaaccattacatggatt
tagtgtgtcctttcgtcattgtcactgttgtctcatcatcatcatcaaac
atgaagttgaaagaagtttgttcaggaacactgaaagggagaaatataaa
ggttatatttttatttcacctatttaagaaattcttcgagaaataaggaa
aaagtgtgaatgaaaaagagaaagcatatctatgtagatagtcgatttat
tttaaactaaattgcaattaattgaaattatatttcactaactcatattt
ttggaatagcgaatgattcgtaaaggttcacaaaaataattatttatggg
aggagtgtggcttagaaattagtttttaaagggaatatctcataaatact
ttattggtattacag

gaattcctacagctgataaacactttcagcaatgtggcaggatattaatt
aactcaaataaatcagtagccttcctttatacaaatgataaacaggctga
aaatgaaattctggataaaaccaatcacaatagccacaaatagtctaaaa
tatcttggtgtaactcttaaccaagaaaatgaaagctctgtaagacaagg
acttcaaacaattatcaactgcattggaaaaacaaaaacaaaggatagac
ataaaaaattctcaacagtctgccatcagtggaaagagaggcccattggt
cgtgtaaactttatctgcctcagtacagaggaacgccagggccaagaagt
gggattgggtgggggagcgtgtggaggacttttgggatagcattggaaat
gtaaatgaaataaaaacccaattaaaaaaataaaaagctcaagtcaacat
ggatctaggacctcaatgggaaagaaccccaaagtcattgactggcacag
agggaagtttcctgaacagaacactagtggttcagcctttaagatcaaca
ctacacctcatgaaaatgaaaagcttcaaggtgaaatatactatcaatta
ctttacatttttaactattctagctttcacttacaataaaatagctaaat
gtgttaatagaatgtctgtccaagaaaattggccatcctaaaagacattt
tagcatttactttggaaagaggagttatataaaaatggcaagaggaggag
ccttaaatgcagggaagcagcatatgaagagacaaatgtggccaatgtgt
caggtcatcagaacctatcaatacaggctgccatcagacagcatagaaga
tgaaatttcaactctattaaggttcaagtactgacaaaagaaaaagccat
acaattataagtaatttttgaatgttgcaaaatgtccaactactcctcaa
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83521463_83522569
seq2: B6Ng01-186A09.b_46_1160

seq1  GAATTCTAGAAATTCGTAACTACAAACGGAATTGCTTGTAATGATAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAATTCGTAACTACAAACGGAATTGCTTGTAATGATAAAAG  50

seq1  GAAAGAATACAACACTTTCCCTAATTTTCCTTAATGTGGCAGAGATTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATACAACACTTTCCCTAATTTTCCTTAATGTGGCAGAGATTAAT  100

seq1  ATTTACATAAATGCCTAAAATAACAAGCAACACAAGCTTTTTAAAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATAAATGCCTAAAATAACAAGCAACACAAGCTTTTTAAAAAATT  150

seq1  AAATCTGATTACAATTGCCTCATTATCTATTTGATGACTGATGTCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGATTACAATTGCCTCATTATCTATTTGATGACTGATGTCTCTGT  200

seq1  GATTCAGAAACAAGCATAACATAAGAGAAATCATGAAAAATATATACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGAAACAAGCATAACATAAGAGAAATCATGAAAAATATATACCAA  250

seq1  GTAGCACATGACATCATTCCTGTGAGTCTTTACTTTTTATTACTGCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACATGACATCATTCCTGTGAGTCTTTACTTTTTATTACTGCCCTG  300

seq1  CTCTCGATGTCAGTGTTTTTAGCATAGGTACTGAACTTTTTTCATCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGATGTCAGTGTTTTTAGCATAGGTACTGAACTTTTTTCATCATGA  350

seq1  TTAACACAGACAGCTATCATACTGCAACATAAAGCTGATTTTTGAACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACAGACAGCTATCATACTGCAACATAAAGCTGATTTTTGAACATC  400

seq1  GTGAGAAGTGATGTAAGTCCCTTGCATTTTCAGGATGGTATTGACCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAGTGATGTAAGTCCCTTGCATTTTCAGGATGGTATTGACCTATT  450

seq1  GAAGAGGAAGCAGTAACAATGTAAAAGACAGGGAATAAAGAGGATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAGCAGTAACAATGTAAAAGACAGGGAATAAAGAGGATTTTTT  500

seq1  TTTTTTTTTTTTTTTTTTTTTTGTAAATGACGTGACTACTGCAATCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTGTAAATGACGTGACTACTGCAATCATAT  550

seq1  ACTCATGTCAGATCTGGCTATCTGTACAAGATAATACCAGCCATAGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTCAGATCTGGCTATCTGTACAAGATAATACCAGCCATAGTTCT  600

seq1  AGCATAAAGATGATACTTCATAGCTTCCCACTATTCTGGGGCAGGACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAAGATGATACTTCATAGCTTCCCACTATTCTGGGGCAGGACAAA  650

seq1  ACAACTAGGGGATAGAGAATCACATTTTGAGAGTGTGAAATTGGTAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAGGGGATAGAGAATCACATTTTGAGAGTGTGAAATTGGTAAGTT  700

seq1  TCTTATGCTCTAGCAGATGGCCCCACACATGTAGAACCATTACATGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGCTCTAGCAGATGGCCCCACACATGTAGAACCATTACATGGATT  750

seq1  TAGTGTGTCCTTTCGTCATTGTCACTGTTGTCTCATCATCATCATCAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTCCTTTCGTCATTGTCACTGTTGTCTCATCATCATCATCAAAC  800

seq1  ATGAAGTTGAAAGAAGTTTGTTCAGGAACACTGAAAGGGAGAAATAT-AA  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGAAGTTGAAAGAAGTTTGTTCAGGAACACTGAAAGGGAGAAATATAAA  850

seq1  GGTTATA-TTTTATTTCACCTATTTAAGAAATTC-TCGAG-AATAAGGAA  896
      ||||||| |||||||||||||||||||||||||| ||||| |||||||||
seq2  GGTTATATTTTTATTTCACCTATTTAAGAAATTCTTCGAGAAATAAGGAA  900

seq1  AAAGTGTGAATGAAAAAGAGAAAGCATATCTATGTAGATAGTCGATTTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGAATGAAAAAGAGAAAGCATATCTATGTAGATAGTCGATTTAT  950

seq1  TTTAAACTAAATTGCAATTAATTGAAATTATAATTCCAACTAACTCATAT  996
      |||||||||||||||||||||||||||||||| |||  ||||||||||||
seq2  TTTAAACTAAATTGCAATTAATTGAAATTATATTTC--ACTAACTCATAT  998

seq1  TTT--GAATAGCGAATGATTCGT-AAGGTTCACAAAAATAA-TATTTATG  1042
      |||  |||||||||||||||||| ||||||||||||||||| ||||||||
seq2  TTTTGGAATAGCGAATGATTCGTAAAGGTTCACAAAAATAATTATTTATG  1048

seq1  GGAGAAGTGT-GCTTAGAAATATGTTTTTAAA-GGAATATCTCATAAATA  1090
      |||| ||||| ||||||||||  ||||||||| |||||||||||||||||
seq2  GGAGGAGTGTGGCTTAGAAATTAGTTTTTAAAGGGAATATCTCATAAATA  1098

seq1  CTTTATTGGTATTACAG  1107
      |||||||||||||||||
seq2  CTTTATTGGTATTACAG  1115


seq1: chr5_83724298_83725246
seq2: B6Ng01-186A09.g_64_1015 (reverse)

seq1  TGTTGA-GAGTAGTT-GACATTTTGCAACATTC-AAAATTACTTTATAAT  47
      |||||| |||||||| ||||||||||||||||| |||||||| |||||||
seq2  TGTTGAGGAGTAGTTGGACATTTTGCAACATTCAAAAATTAC-TTATAAT  49

seq1  TGTCT-GCTTTTTCTTTTGTCAGTACTGGAACATTAATAGAGTTTGAATT  96
      ||| | ||||||||||||||||||||| |||| |||||||||||  ||||
seq2  TGTATGGCTTTTTCTTTTGTCAGTACTTGAACCTTAATAGAGTTGAAATT  99

seq1  TCATCTTCTATGCTGTCTGATGGCAGCCTGTATTTGATAGGTTCTGATGA  146
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCATCTTCTATGCTGTCTGATGGCAGCCTGTA-TTGATAGGTTCTGATGA  148

seq1  CCTGACACATT-GCCACATTTGTCTCTTCATATGCTTGCTTCCCTGCATT  195
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  CCTGACACATTGGCCACATTTGTCTCTTCATATGC-TGCTTCCCTGCATT  197

seq1  TAAGGCTCCTCCTCTTGCCATTTTTATATAACTCCTCTTTCCAAAGTAAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTCCTCCTCTTGCCATTTTTATATAACTCCTCTTTCCAAAGTAAA  247

seq1  TGCT-AAATGTCTTTTAGGATGGCCAATTTTCTTGGACAGACATTCTATT  294
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAATGTCTTTTAGGATGGCCAATTTTCTTGGACAGACATTCTATT  297

seq1  AACACATTTAGCTATTTTATTGTAAGTGAAAGCTAGAATAGTTAAAAATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTTAGCTATTTTATTGTAAGTGAAAGCTAGAATAGTTAAAAATG  347

seq1  TAAAGTAATTGATAGTATATTTCACCTTGAAGCTTTTCATTTTCATGAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAATTGATAGTATATTTCACCTTGAAGCTTTTCATTTTCATGAGG  397

seq1  TGTAGTGTTGATCTTAAAGGCTGAACCACTAGTGTTCTGTTCAGGAAACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTTGATCTTAAAGGCTGAACCACTAGTGTTCTGTTCAGGAAACT  447

seq1  TCCCTCTGTGCCAGTCAATGACTTTGGGGTTCTTTCCCATTGAGGTCCTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGTGCCAGTCAATGACTTTGGGGTTCTTTCCCATTGAGGTCCTA  497

seq1  GATCCATGTTGACTTGAGCTTTTTATTTTTTTAATTGGGTTTTTATTTCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATGTTGACTTGAGCTTTTTATTTTTTTAATTGGGTTTTTATTTCA  547

seq1  TTTACATTTCCAATGCTATCCCAAAAGTCCTCCACACGCTCCCCCACCCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTCCAATGCTATCCCAAAAGTCCTCCACACGCTCCCCCACCCA  597

seq1  ATCCCACTTCTTGGCCCTGGCGTTCCTCTGTACTGAGGCAGATAAAGTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACTTCTTGGCCCTGGCGTTCCTCTGTACTGAGGCAGATAAAGTTT  647

seq1  ACACGACCAATGGGCCTCTCTTTCCACTGATGGCAGACTGTTGAGAATTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGACCAATGGGCCTCTCTTTCCACTGATGGCAGACTGTTGAGAATTT  697

seq1  TTTATGTCTATCCTTTGTTTTTGTTTTTCCAATGCAGTTGATAATTGTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCTATCCTTTGTTTTTGTTTTTCCAATGCAGTTGATAATTGTTT  747

seq1  GAAGTCCTTGTCTTACAGAGCTTTCATTTTCTTGGTTAAGAGTTACACCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCTTGTCTTACAGAGCTTTCATTTTCTTGGTTAAGAGTTACACCA  797

seq1  AGATATTTTAGACTATTTGTGGCTATTGTGATTGGTTTTATCCAGAATTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTAGACTATTTGTGGCTATTGTGATTGGTTTTATCCAGAATTT  847

seq1  CATTTTCAGCCTGTTTATCATTTGTATAAAGGAAGGCTACTGATTTATTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAGCCTGTTTATCATTTGTATAAAGGAAGGCTACTGATTTATTT  897

seq1  GAGTTAATTAATATCCTGCCACATTGCTGAAAGTGTTTATCAGCTGTAGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATTAATATCCTGCCACATTGCTGAAAGTGTTTATCAGCTGTAGG  947

seq1  AATTC  949
      |||||
seq2  AATTC  952


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