BAC Information

Click to search

BAC

Clone NameB6Ng01-188A22
Chromosome5 (Build37)
Map Location 61,496,984 - 61,612,941
singlet/doubletdoublet
Overlap geneLOC666597
Upstream geneCbfa2t2-ps1, LOC100041498
Downstream geneEG666610, LOC100041524, G6pd2, LOC100041543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188A22.bB6Ng01-188A22.g
ACCGA012465GA012466
length1,1511,167
definitionB6Ng01-188A22.b B6Ng01-188A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,611,772 - 61,612,941)(61,496,984 - 61,498,163)
sequence
gaattcaaaatgattttgagaatacttgctaaaattttttgtttgtatac
tatttaatgcatggggagacctatttgctgttctagcaaatttgacttgg
cttcacagttatcatgtgtagtaagaaaaactgccacttgtaaacttgga
gctaatcctatgtgtgttgaactcagctgttgatctgagaaactatttaa
gaaagacatcatgtaacaattgtaaatgccatgggtatgactggaaagta
cacttggtttttgttttatttttttaattatttttttacactccatattc
cattcccctccttcgcatccaccctctgactgctccacatctcacacctc
ctccccacccactccatctctatgtggatgtcctcaccacattattgtgt
tctatgaacctccctcctacacagattgctcaaagaaggtagtttctcat
caactcatcttaaaaccatatattaaagaattccttccctagtattcctc
ttatatttttggttgtgagcctagcctttaacggctgagccatctctcca
gcccaattgcaccctagtattcctatcataagaaatgtctttctttattg
catttttagaacagacaacctgaactaccagctttattgaataacatatt
ctctgtttataaaactgatagttgtttttactcaaacactcaactaaaac
attctattttgtttgctatgttcttctccttggaagattattaatgatgt
cttccatttcttttgggtttgtgggactttctacatggtttttctgatcc
tgatttaactttggtaactgatatctgtctagaaaattgtccatttcatc
cagattttccagttctgttgagtataggcttttgcggtattatctgatga
tttttttttgagtttcctcggtttcagttgttatgtctaatttttcattt
ctgattttgttaatttggatactatctctgtgactctatctagtctagct
aagggtttatctatcttatgattttctcaatactagctcctggtttgctg
gtctttgtacattccctgtttctctgttattttagctctgatttgatatt
ctgcagtctaccctcgtggatatttgcttcttttgatctcggagcttcag
a

gaattcatcttaatagaaaggtttgagaagaaacacaatgtctcagtatt
taataggcaaaatgactgatagttgcatatgtacttaagctgtgtatatg
gagtaaagtgaagacatttaacacataaagactcaaaatatattcttatt
tgcagtaggaaagaggagttatgtccaagaaatggcaacatcaagagaaa
ccatacaggttatggaatcagattgaaaatacaaagatcagcaaacacaa
actcagatttgtgaagcaagtatagggaaaccagtttcgtctccatgact
gtaagttgataattattattattttaattattttatataaaattaatatg
tgcataattatttattcaatttctagcgggttgctgtaacacttctgtga
acaagtaaactttgttccagcagaagacacatctgttaagtgaactggga
tgatgatatgatagagaaagtggagattaaaaaatggatacatgacattt
ttattagcaagaaataatgcaagctgtaactcctgtcattattccagtgt
actgacttccatgctcaaatttttcactcaaactttaacactctggtatc
ccaggaaagcacaaacttcaacttgtcttcagagaagatcatttacccta
aagcttcttggttgcatcttatacccttcttctcatctgcaggaaaattg
gattacagatcttcagctttataataaggttcgcatctctttccaaagaa
tgatttttaatcattgccacccttccacaaaatgtatgcaggaatgtgtc
ccagggattagtcttacattttcattggtaccattgatcagagctaagaa
tcctatttatttaagagttgtcacatgcttgagaattttgacttaagaca
gagaagaataataaaaaaactaaactagggcacaaggtatgtataggaga
tttggagaatagaagtatgtgttgaatcaaatgcagcagattaagagctg
taaaggaacattgaatcattattttttccatattaaatacgaaaaacaaa
ttatttttaaatgatatgtagcaaaaataaaaatcaaatctgaagtctca
aggtggttggctactgcacgatatgaaaagtcatggcagattacttgctt
tttaatataggtattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_61611772_61612941
seq2: B6Ng01-188A22.b_45_1195 (reverse)

seq1  TCTGAAAGCTCCGAGAACAAAAAGAAGCAAATATACCCACGAGGGGTAGA  50
      |||| ||||||||||| | |||||||||||||||  |||||| |||||||
seq2  TCTG-AAGCTCCGAGATC-AAAAGAAGCAAATAT--CCACGA-GGGTAGA  45

seq1  CTGCAGGAAATAATCAAAATCAGAGCTAAAATAAACCAAGGAGAAACAGG  100
      ||||||  ||| ||| ||||||||||||||||||  ||  ||||||||||
seq2  CTGCAG--AAT-ATC-AAATCAGAGCTAAAATAA--CA--GAGAAACAGG  87

seq1  GAATGTTACAAAGAACCAGCAAAACCAGGAGCTAGTTATTTGAGAAAATC  150
      ||||| ||||||| |||||| |||||||||||||||   |||||||||||
seq2  GAATG-TACAAAG-ACCAGC-AAACCAGGAGCTAGT--ATTGAGAAAATC  132

seq1  AATAAGATAGATAAACCCTTAGCTAGACTAGATAGAGGTCACAGAGATAG  200
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  -ATAAGATAGATAAACCCTTAGCTAGACTAGATAGA-GTCACAGAGATAG  180

seq1  TATCCAAATTAACAAAATCAGAAATGAAAATTTAGACATAACAACTGAAA  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATCCAAATTAACAAAATCAGAAATGAAAAATTAGACATAACAACTGAAA  230

seq1  CCGAGGAAACTC-AAAAAAAATCATCAGATAATACCGCAAAAGCCTATAC  299
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCGAGGAAACTCAAAAAAAAATCATCAGATAATACCGCAAAAGCCTATAC  280

seq1  TCAACAGAACTGGAAAATCTGGATGAAATGGACAATTTTCTAGACAGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAACTGGAAAATCTGGATGAAATGGACAATTTTCTAGACAGATA  330

seq1  TCAGTTACCAAAGTTAAATCAGGATCAGAAAAACCATGTAGAAAGTCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTACCAAAGTTAAATCAGGATCAGAAAAACCATGTAGAAAGTCCCA  380

seq1  CAAACCCAAAAGAAATGGAAGACATCATTAATAATCTTCCAAGGAGAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCAAAAGAAATGGAAGACATCATTAATAATCTTCCAAGGAGAAGA  430

seq1  ACATAGCAAACAAAATAGAATGTTTTAGTTGAGTGTTTGAGTAAAAACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAAACAAAATAGAATGTTTTAGTTGAGTGTTTGAGTAAAAACAA  480

seq1  CTATCAGTTTTATAAACAGAGAATATGTTATTCAATAAAGCTGGTAGTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTTTTATAAACAGAGAATATGTTATTCAATAAAGCTGGTAGTTC  530

seq1  AGGTTGTCTGTTCTAAAAATGCAATAAAGAAAGACATTTCTTATGATAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTCTGTTCTAAAAATGCAATAAAGAAAGACATTTCTTATGATAGG  580

seq1  AATACTAGGGTGCAATTGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAGGGTGCAATTGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTA  630

seq1  GGCTCACAACCAAAAATATAAGAGGAATACTAGGGAAGGAATTCTTTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAACCAAAAATATAAGAGGAATACTAGGGAAGGAATTCTTTAAT  680

seq1  ATATGGTTTTAAGATGAGTTGATGAGAAACTACCTTCTTTGAGCAATCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTTTAAGATGAGTTGATGAGAAACTACCTTCTTTGAGCAATCTG  730

seq1  TGTAGGAGGGAGGTTCATAGAACACAATAATGTGGTGAGGACATCCACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAGGGAGGTTCATAGAACACAATAATGTGGTGAGGACATCCACAT  780

seq1  AGAGATGGAGTGGGTGGGGAGGAGGTGTGAGATGTGGAGCAGTCAGAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGAGTGGGTGGGGAGGAGGTGTGAGATGTGGAGCAGTCAGAGGG  830

seq1  TGGATGCGAAGGAGGGGAATGGAATATGGAGTGTAAAAAAATAATTAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCGAAGGAGGGGAATGGAATATGGAGTGTAAAAAAATAATTAAAA  880

seq1  AAATAAAACAAAAACCAAGTGTACTTTCCAGTCATACCCATGGCATTTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAAAAACCAAGTGTACTTTCCAGTCATACCCATGGCATTTAC  930

seq1  AATTGTTACATGATGTCTTTCTTAAATAGTTTCTCAGATCAACAGCTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTACATGATGTCTTTCTTAAATAGTTTCTCAGATCAACAGCTGAG  980

seq1  TTCAACACACATAGGATTAGCTCCAAGTTTACAAGTGGCAGTTTTTCTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACACATAGGATTAGCTCCAAGTTTACAAGTGGCAGTTTTTCTTA  1030

seq1  CTACACATGATAACTGTGAAGCCAAGTCAAATTTGCTAGAACAGCAAATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATGATAACTGTGAAGCCAAGTCAAATTTGCTAGAACAGCAAATA  1080

seq1  GGTCTCCCCATGCATTAAATAGTATACAAACAAAAAATTTTAGCAAGTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCCCATGCATTAAATAGTATACAAACAAAAAATTTTAGCAAGTAT  1130

seq1  TCTCAAAATCATTTTGAATTC  1170
      |||||||||||||||||||||
seq2  TCTCAAAATCATTTTGAATTC  1151


seq1: chr5_61496984_61498163
seq2: B6Ng01-188A22.g_67_1233

seq1  GAATTCATCTTAATAGAAAGGTTTGAGAAGAAACACAATGTCTCAGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTAATAGAAAGGTTTGAGAAGAAACACAATGTCTCAGTATT  50

seq1  TAATAGGCAAAATGACTGATAGTTGCATATGTACTTAAGCTGTGTATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGCAAAATGACTGATAGTTGCATATGTACTTAAGCTGTGTATATG  100

seq1  GAGTAAAGTGAAGACATTTAACACATAAAGACTCAAAATATATTCTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGTGAAGACATTTAACACATAAAGACTCAAAATATATTCTTATT  150

seq1  TGCAGTAGGAAAGAGGAGTTATGTCCAAGAAATGGCAACATCAAGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAGGAAAGAGGAGTTATGTCCAAGAAATGGCAACATCAAGAGAAA  200

seq1  CCATACAGGTTATGGAATCAGATTGAAAATACAAAGATCAGCAAACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAGGTTATGGAATCAGATTGAAAATACAAAGATCAGCAAACACAA  250

seq1  ACTCAGATTTGTGAAGCAAGTATAGGGAAACCAGTTTCGTCTCCATGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGATTTGTGAAGCAAGTATAGGGAAACCAGTTTCGTCTCCATGACT  300

seq1  GTAAGTTGATAATTATTATTATTTTAATTATTTTATATAAAATTAATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTGATAATTATTATTATTTTAATTATTTTATATAAAATTAATATG  350

seq1  TGCATAATTATTTATTCAATTTCTAGCGGGTTGCTGTAACACTTCTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATTATTTATTCAATTTCTAGCGGGTTGCTGTAACACTTCTGTGA  400

seq1  ACAAGTAAACTTTGTTCCAGCAGAAGACACATCTGTTAAGTGAACTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAAACTTTGTTCCAGCAGAAGACACATCTGTTAAGTGAACTGGGA  450

seq1  TGATGATATGATAGAGAAAGTGGAGATTAAAAAATGGATACATGACATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATATGATAGAGAAAGTGGAGATTAAAAAATGGATACATGACATTT  500

seq1  TTATTAGCAAGAAATAATGCAAGCTGTAACTCCTGTCATTATTCCAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGCAAGAAATAATGCAAGCTGTAACTCCTGTCATTATTCCAGTGT  550

seq1  ACTGACTTCCATGCTCAAATTTTTCACTCAAACTTTAACACTCTGGTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTCCATGCTCAAATTTTTCACTCAAACTTTAACACTCTGGTATC  600

seq1  CCAGGAAAGCACAAACTTCAACTTGTCTTCAGAGAAGATCATTTACCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGCACAAACTTCAACTTGTCTTCAGAGAAGATCATTTACCCTA  650

seq1  AAGCTTCTTGGTTGCATCTTATACCCTTCTTCTCATCTGCAGGAAAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTTGGTTGCATCTTATACCCTTCTTCTCATCTGCAGGAAAATTG  700

seq1  GATTACAGATCTTCAGCTTTATAATAAGGTTCGCATCTCTTTCCAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGATCTTCAGCTTTATAATAAGGTTCGCATCTCTTTCCAAAGAA  750

seq1  TGATTTTTAATCATTGCCACCCTTCCACAAAATGTATGCAGGAATGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAATCATTGCCACCCTTCCACAAAATGTATGCAGGAATGTGTC  800

seq1  CCAGGGATTAGTCTTACATTTTCATTGGTACCATTGATCAGAGCTAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATTAGTCTTACATTTTCATTGGTACCATTGATCAGAGCTAAGAA  850

seq1  TCCTATTTATTTAAGAGTTGTCACATGCTTGAGAATTTTGACTTAAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTATTTAAGAGTTGTCACATGCTTGAGAATTTTGACTTAAGACA  900

seq1  GAGAAGAATAATAAAAAAACTAAACTAGGGCACAAGGTATGTATAGGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAATAATAAAAAAACTAAACTAGGGCACAAGGTATGTATAGGAGA  950

seq1  TTTGGAGAATAGAAGTATGTGTTGAATCAAAAATGCAGCAGATTAAGAGC  1000
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  TTTGGAGAATAGAAGTATGTGTTGAATC--AAATGCAGCAGATTAAGAGC  998

seq1  TGTAAAGGAACATTGAATCATTA-TTTTTCCATATTTAAAATAAGGAAAA  1049
      ||||||||||||||||||||||| ||||||||||||  ||||| |  |||
seq2  TGTAAAGGAACATTGAATCATTATTTTTTCCATATT--AAATACG--AAA  1044

seq1  AACAAATTATTTTAAAATGAATATGTAGCAAAAAT-AAAATCAAATCTGA  1098
      ||||||||||||| ||||| ||||||||||||||| ||||||||||||||
seq2  AACAAATTATTTTTAAATG-ATATGTAGCAAAAATAAAAATCAAATCTGA  1093

seq1  AATTCTTCAAAGTTGTT-GCTACTGTGAACAAATTATGAAAAAAATCATG  1147
      | |   |||| || ||| |||||||    ||   ||||  |||| |||||
seq2  AGT--CTCAAGGTGGTTGGCTACTG----CACGATATG--AAAAGTCATG  1135

seq1  GCAGATTTACTTGTTTTTTTAATTAGGTATTTA  1180
      ||||| ||||||| ||||| |  ||||||||||
seq2  GCAGA-TTACTTGCTTTTTAATATAGGTATTTA  1167


| Home | SequenceCutter | Blast | Download |