BAC Information

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BAC

Clone NameB6Ng01-189G09
Chromosome5 (Build37)
Map Location 107,530,584 - 107,662,031
singlet/doubletdoublet
Overlap geneTgfbr3
Upstream geneLOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7
Downstream geneLOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189G09.bB6Ng01-189G09.g
ACCGA013430GA013431
length723527
definitionB6Ng01-189G09.b B6Ng01-189G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,661,313 - 107,662,031)(107,530,584 - 107,531,116)
sequence
gaattcaaaggactgctcttactgcaaagccaatgtgctaactagaggct
gcgtggcgagtgtgagaatccttagctagaccagagtctcttgtgacgct
gaaccacagttagcatctgttatatttctagctgttttagaaacaggaga
tgctgaggcgctagataaatcacacgtggtaacattaagacatttgtttt
actaagaatatccattatgtgagaacaattaaaaatgatcattttagagt
caagctctcagtttgatttgggggaggggtaagtattttatatcatactt
acatgaagaatatggatactgatggtcttaaatacttcatgtcactgttg
atgtttactgtgccggtgaagagtttcatctgagcccagtaaatgggaac
cacattctgtaatgattttcagaacataaggtgaaagaggttccataaaa
tactcaggtgggctgagtgatgagatgaacatctgctagggctgggacga
tagctcagtggtagagtgtttccctcgcattcacaaggccctgggtacaa
tactcagtacaaccaaaaaggaaaaataatagggagatagataaatagat
agatagatagatagatagatagatagatagatagaagatgatcatttaat
ccaggacaaaggattctgaccttataggttttgtgccagccaacttggtt
ggtctgtgtgtttttcttaactt
tcagaggcaacaagaggagaaaaatcattaaaaaatcagttcaggctgtg
gccttctgaggaggaggggtgacatcatgtgacctttactttagtgtgga
aatcaaatctacatgaagcacagcgttcattttctctggaagaaaaaaaa
aagctgagatggaaagttagagacaaaggaagaaaaatgccaaaactcaa
acctcagactattaatgacatctgtaaaaattaatcaagttgcttgcatg
cttttgaacacattaacttaggaaagagcgatgtatgagcttggctcgct
aggaaacaagaaaaagatgccagcatttttctcagaaatgacgtttgtta
atatttcttcattttatagaattattatagcattcataggcagcagctgg
aagaaacaacacaccacaaatgactttgacttgtaaaatgtgtggaacag
gagagagagagagagagtgagggagagacagagagagagagagagtgagg
gagagacagagagagagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_107661313_107662031
seq2: B6Ng01-189G09.b_45_766 (reverse)

seq1  AGTTAAG-AAAACACACAGA-CAACCAAGGTGGCTGGCAC-ACAGCTATA  47
      ||||||| |||||||||||| |||||||| |||||||||| | | |||||
seq2  AGTTAAGAAAAACACACAGACCAACCAAGTTGGCTGGCACAAAACCTATA  50

seq1  AGGTCAGAATCCTTTGTCCTGGATTAAATGATCATCTTCTATCTATCTAT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGAATCCTTTGTCCTGGATTAAATGATCATCTTCTATCTATCTAT  100

seq1  CTATCTATCTATCTATCTATCTATCTATTTATCTATCTCCCTATTATTTT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATTTATCTATCTCCCTATTATTTT  150

seq1  TCCTTTTTGGTTGTACTGAGTATTGTACCCAGGGCCTTGTGAATGCGAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTGGTTGTACTGAGTATTGTACCCAGGGCCTTGTGAATGCGAGG  200

seq1  GAAACACTCTACCACTGAGCTATCGTCCCAGCCCTAGCAGATGTTCATCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTCTACCACTGAGCTATCGTCCCAGCCCTAGCAGATGTTCATCT  250

seq1  CATCACTCAGCCCACCTGAGTATTTTATGGAACCTCTTTCACCTTATGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTCAGCCCACCTGAGTATTTTATGGAACCTCTTTCACCTTATGTT  300

seq1  CTGAAAATCATTACAGAATGTGGTTCCCATTTACTGGGCTCAGATGAAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATCATTACAGAATGTGGTTCCCATTTACTGGGCTCAGATGAAAC  350

seq1  TCTTCACCGGCACAGTAAACATCAACAGTGACATGAAGTATTTAAGACCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACCGGCACAGTAAACATCAACAGTGACATGAAGTATTTAAGACCA  400

seq1  TCAGTATCCATATTCTTCATGTAAGTATGATATAAAATACTTACCCCTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATCCATATTCTTCATGTAAGTATGATATAAAATACTTACCCCTCC  450

seq1  CCCAAATCAAACTGAGAGCTTGACTCTAAAATGATCATTTTTAATTGTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATCAAACTGAGAGCTTGACTCTAAAATGATCATTTTTAATTGTTC  500

seq1  TCACATAATGGATATTCTTAGTAAAACAAATGTCTTAATGTTACCACGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAATGGATATTCTTAGTAAAACAAATGTCTTAATGTTACCACGTG  550

seq1  TGATTTATCTAGCGCCTCAGCATCTCCTGTTTCTAAAACAGCTAGAAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATCTAGCGCCTCAGCATCTCCTGTTTCTAAAACAGCTAGAAATA  600

seq1  TAACAGATGCTAACTGTGGTTCAGCGTCACAAGAGACTCTGGTCTAGCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATGCTAACTGTGGTTCAGCGTCACAAGAGACTCTGGTCTAGCTA  650

seq1  AGGATTCTCACACTCGCCACGCAGCCTCTAGTTAGCACATTGGCTTTGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTCACACTCGCCACGCAGCCTCTAGTTAGCACATTGGCTTTGCA  700

seq1  GTAAGAGCAGTCCTTTGAATTC  719
      ||||||||||||||||||||||
seq2  GTAAGAGCAGTCCTTTGAATTC  722

seq1: chr5_107530584_107531116
seq2: B6Ng01-189G09.g_67_599

seq1  GAATTCTCAGAGGCAACAAGAGGAGAAAAATCATTAAAAAATCAGTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGGCAACAAGAGGAGAAAAATCATTAAAAAATCAGTTCAG  50

seq1  GCTGTGGCCTTCTGAGGAGGAGGGGTGACATCATGTGACCTTTACTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGCCTTCTGAGGAGGAGGGGTGACATCATGTGACCTTTACTTTAG  100

seq1  TGTGGAAATCAAATCTACATGAAGCACAGCGTTCATTTTCTCTGGAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAATCAAATCTACATGAAGCACAGCGTTCATTTTCTCTGGAAGAA  150

seq1  AAAAAAAAGCTGAGATGGAAAGTTAGAGACAAAGGAAGAAAAATGCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGCTGAGATGGAAAGTTAGAGACAAAGGAAGAAAAATGCCAAA  200

seq1  ACTCAAACCTCAGACTATTAATGACATCTGTAAAAATTAATCAAGTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACCTCAGACTATTAATGACATCTGTAAAAATTAATCAAGTTGCT  250

seq1  TGCATGCTTTTGAACACATTAACTTAGGAAAGAGCGATGTATGAGCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTTTTGAACACATTAACTTAGGAAAGAGCGATGTATGAGCTTGG  300

seq1  CTCGCTAGGAAACAAGAAAAAGATGCCAGCATTTTTCTCAGAAATGACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTAGGAAACAAGAAAAAGATGCCAGCATTTTTCTCAGAAATGACGT  350

seq1  TTGTTAATATTTCTTCATTTTATAGAATTATTATAGCATTCATAGGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATATTTCTTCATTTTATAGAATTATTATAGCATTCATAGGCAGC  400

seq1  AGCTGGAAGAAACAACACACCACAAATGACTTTGACTTGTAAAATGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAAGAAACAACACACCACAAATGACTTTGACTTGTAAAATGTGTG  450

seq1  GAACAGGAGAGAGAGAGAGAGAGTGAGGGAGAGACAGAGAGAGAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGAGAGAGAGAGAGAGAGTGAGGGAGAGACAGAGAGAGAGAGAGA  500

seq1  GTGAGGGAGAGACAGAGAGAGAGAGAGAGAGAG  533
      |||||||||||||||||||||||||||||||||
seq2  GTGAGGGAGAGACAGAGAGAGAGAGAGAGAGAG  533