BAC Information

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BAC

Clone NameB6Ng01-190N18
Chromosome5 (Build37)
Map Location 121,233,374 - 121,418,682
singlet/doubletdoublet
Overlap geneOas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a
Upstream geneEG433945, Tbx5, Rbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3
Downstream geneLOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190N18.bB6Ng01-190N18.g
ACCGA014510GA014511
length1,069442
definitionB6Ng01-190N18.b B6Ng01-190N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,417,612 - 121,418,682)(121,233,374 - 121,233,821)
sequence
gaattcttcatattgagggctgtgctgtgcaccgtacgctgtttaaacag
catctctggtctctagctaccagatgcttatcggtaaccccagcagctgt
gatgaccaaatgtggctccagacactgaccaccgttccctgggggcagag
tcatccctggctgaaaccatttcccgtgtccctttgctgatggttcatga
acagaagatgtgagtggaggagtgtgctgacatcatagccagcttttagg
ggaatgatggaaaacaacactgggctaaatcatctaatgtctgccccacg
cttagagctccaaacagggcactcatagcctcagcagtgaccccgtgctg
cagaacaaattattgccatcagtgttttctagatgagagaactgaagcac
agagaggttaagcaacatgccaggagccacacagttaacaagtgagggaa
ctgggaacaagagcccaggctagcccaccactgtagcccttttctacggt
cccacagagaggtatttcttgcaccctgggccatgaactctcagatgctc
tgtgcatcctctcatccgtgtaacgtcctcagggagagaaaggttcattg
ctgcctaacagctggggaacctgaagccccatgtccaggtgcgcacagcc
ttcctgtggccacgtgagactctggagttaagcatctttcacattctgct
gcctccagggactgcaagtgtcgaggggagttgacagatggtggagggac
gtggggagacaggcattcacaggtgtctccggtatctgtctgactgattg
cttcgcttctctctcctggctccatttatcatgattgaaacagtggagag
gcacagactgagccacagccctaagcaccgaatgacatgaaatttccctc
atccgacatccagggcaattagaccagccaccagtgccgcttgctagggg
tggccctctgcgtgcctcagtgtcccagtctgtaagcagggtgactagca
gaaccaatctcacagtgctcactactcaaaaaaaaaaaaaggggggggga
gttacttagcacagcacct
agtgtctccctggggcgggcgccctgtgtgctcacgtgtgtgccagggtt
tgtatgaagacgggtcagctggaagatctcacccgaggcatcaaaaaggc
aggacacattttctttgagcatgggggttcgcctggtaacttcctgtccc
tgtgaaggttccctacgtcttaactccctgcaggaacaccaccctcttct
cagatgtttgcacattttacagacctggcttctgtttcctcagcagatag
gagctcggagtgtgccctgtccctggggactgtatttgtgaaatgtcctg
gtgttcacacacctgcctctctctctgaaccagtagctcctaatccctag
taccccaatgcctccaggaaccccctacatctcaaatatctcctccttgg
ttggttggtactgttaggcagtggggtagggtgggggagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121417612_121418682
seq2: B6Ng01-190N18.b_48_1116 (reverse)

seq1  AGGTGCTGTGCTAAGTACTCCCCCCCCCCTTTTTTTTTTTTTGAGTAGTG  50
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  AGGTGCTGTGCTAAGTAACTCCCCCCCCCTTTTTTTTTTTTTGAGTAGTG  50

seq1  AGCACCTGTGAGATTGGTTCTGCTAGTCACCCCTGCTTTACAGACTGGGA  100
      |||| |||||||||||||||||||||||| |||||| |||||||||||||
seq2  AGCA-CTGTGAGATTGGTTCTGCTAGTCA-CCCTGC-TTACAGACTGGGA  97

seq1  CACTGAGGCACGCAGAGGGCCACCCCTAGCAAGCGGCACTGGTGGCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGCACGCAGAGGGCCACCCCTAGCAAGCGGCACTGGTGGCTGGT  147

seq1  CTAATTG-CCTGGATGTCGGATGAGGGAAATTTCATGTCATTCGGTGCTT  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGCCCTGGATGTCGGATGAGGGAAATTTCATGTCATTCGGTGCTT  197

seq1  AGGGCTGTGGCTCAGTCTGTGCCTCTCCACTGTTTCAATCATGATAAATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTGGCTCAGTCTGTGCCTCTCCACTGTTTCAATCATGATAAATG  247

seq1  GAGCCAGGAGAGAGAAGCGAAGCAATCAGTCAGACAGATACCGGAGACAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGAGAGAGAAGCGAAGCAATCAGTCAGACAGATACCGGAGACAC  297

seq1  CTGTGAATGCCTGTCTCCCCACGTCCCTCCACCATCTGTCAACTCCCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATGCCTGTCTCCCCACGTCCCTCCACCATCTGTCAACTCCCCTC  347

seq1  GACACTTGCAGTCCCTGGAGGCAGCAGAATGTGAAAGATGCTTAACTCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTGCAGTCCCTGGAGGCAGCAGAATGTGAAAGATGCTTAACTCCA  397

seq1  GAGTCTCACGTGGCCACAGGAAGGCTGTGCGCACCTGGACATGGGGCTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCACGTGGCCACAGGAAGGCTGTGCGCACCTGGACATGGGGCTTC  447

seq1  AGGTTCCCCAGCTGTTAGGCAGCAATGAACCTTTCTCTCCCTGAGGACGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCCAGCTGTTAGGCAGCAATGAACCTTTCTCTCCCTGAGGACGT  497

seq1  TACACGGATGAGAGGATGCACAGAGCATCTGAGAGTTCATGGCCCAGGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGGATGAGAGGATGCACAGAGCATCTGAGAGTTCATGGCCCAGGGT  547

seq1  GCAAGAAATACCTCTCTGTGGGACCGTAGAAAAGGGCTACAGTGGTGGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAATACCTCTCTGTGGGACCGTAGAAAAGGGCTACAGTGGTGGGC  597

seq1  TAGCCTGGGCTCTTGTTCCCAGTTCCCTCACTTGTTAACTGTGTGGCTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGGGCTCTTGTTCCCAGTTCCCTCACTTGTTAACTGTGTGGCTCC  647

seq1  TGGCATGTTGCTTAACCTCTCTGTGCTTCAGTTCTCTCATCTAGAAAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGTTGCTTAACCTCTCTGTGCTTCAGTTCTCTCATCTAGAAAACA  697

seq1  CTGATGGCAATAATTTGTTCTGCAGCACGGGGTCACTGCTGAGGCTATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGCAATAATTTGTTCTGCAGCACGGGGTCACTGCTGAGGCTATGA  747

seq1  GTGCCCTGTTTGGAGCTCTAAGCGTGGGGCAGACATTAGATGATTTAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTGTTTGGAGCTCTAAGCGTGGGGCAGACATTAGATGATTTAGCC  797

seq1  CAGTGTTGTTTTCCATCATTCCCCTAAAAGCTGGCTATGATGTCAGCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGTTTTCCATCATTCCCCTAAAAGCTGGCTATGATGTCAGCACA  847

seq1  CTCCTCCACTCACATCTTCTGTTCATGAACCATCAGCAAAGGGACACGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCACTCACATCTTCTGTTCATGAACCATCAGCAAAGGGACACGGG  897

seq1  AAATGGTTTCAGCCAGGGATGACTCTGCCCCCAGGGAACGGTGGTCAGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTTCAGCCAGGGATGACTCTGCCCCCAGGGAACGGTGGTCAGTG  947

seq1  TCTGGAGCCACATTTGGTCATCACAGCTGCTGGGGTTACCGATAAGCATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGCCACATTTGGTCATCACAGCTGCTGGGGTTACCGATAAGCATC  997

seq1  TGGTAGCTAGAGACCAGAGATGCTGTTTAAACAGCGTACGGTGCACAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCTAGAGACCAGAGATGCTGTTTAAACAGCGTACGGTGCACAGCA  1047

seq1  CAGCCCTCAATATGAAGAATTC  1071
      ||||||||||||||||||||||
seq2  CAGCCCTCAATATGAAGAATTC  1069

seq1: chr5_121233374_121233821
seq2: B6Ng01-190N18.g_65_512

seq1  GAATTCAGTGTCTCCCTGGGGCGGGCGCCCTGTGTGCTCACGTGTGTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTCTCCCTGGGGCGGGCGCCCTGTGTGCTCACGTGTGTGCC  50

seq1  AGGGTTTGTATGAAGACGGGTCAGCTGGAAGATCTCACCCGAGGCATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGTATGAAGACGGGTCAGCTGGAAGATCTCACCCGAGGCATCAA  100

seq1  AAAGGCAGGACACATTTTCTTTGAGCATGGGGGTTCGCCTGGTAACTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGGACACATTTTCTTTGAGCATGGGGGTTCGCCTGGTAACTTCC  150

seq1  TGTCCCTGTGAAGGTTCCCTACGTCTTAACTCCCTGCAGGAACACCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGTGAAGGTTCCCTACGTCTTAACTCCCTGCAGGAACACCACCC  200

seq1  TCTTCTCAGATGTTTGCACATTTTACAGACCTGGCTTCTGTTTCCTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCAGATGTTTGCACATTTTACAGACCTGGCTTCTGTTTCCTCAGC  250

seq1  AGATAGGAGCTCGGAGTGTGCCCTGTCCCTGGGGACTGTATTTGTGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAGCTCGGAGTGTGCCCTGTCCCTGGGGACTGTATTTGTGAAAT  300

seq1  GTCCTGGTGTTCACACACCTGCCTCTCTCTCTGAACCAGTAGCTCCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTGTTCACACACCTGCCTCTCTCTCTGAACCAGTAGCTCCTAAT  350

seq1  CCCTAGTACCCCAATGCCTCCAGGAACCCCCTACATCTCAAATATCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTACCCCAATGCCTCCAGGAACCCCCTACATCTCAAATATCTCCT  400

seq1  CCTTGGTTGGTTGGTACTGTTAGGCAGTGGGGTAGGGTGGGGGAGCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTGGTTGGTACTGTTAGGCAGTGGGGTAGGGTGGGGGAGCTT  448