BAC Information

Click to search

BAC

Clone NameB6Ng01-191G24
Chromosome5 (Build37)
Map Location 11,791,972 - 11,971,239
singlet/doubletdoublet
Overlap geneLOC623998, EG668043, LOC545732, LOC384144
Upstream geneLOC100041395, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191G24.bB6Ng01-191G24.g
ACCGA014929GA014930
length1,1721,137
definitionB6Ng01-191G24.b B6Ng01-191G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,791,972 - 11,793,159)(11,970,108 - 11,971,239)
sequence
gaattctacaggaatgttggggaaattggggaagcgctgagggagtgaaa
atatatgatccaaaaataatatatgaaaaattaataaaaaggtttaaaga
ataaacaagtgagcatgtttctaaatattaattaaagtctttgcatttaa
aacaacagttattcaatttaaaattaaccattttgtctcatccttgtatt
ggtctccttgctgtgttcagctagtacagggtgtaacatagtgccctttt
ctcatacacagactgaaaaatattctgcaaaaatttctttcaagcagtgt
ttgaattgacagagtttggtaaacttaaaatttgtttcctcacagttctt
tgaaactaagttcttgatgtgtttctctatatattggttctagtagctga
taacttatgtgagaacggaataaagtgcaggttttatttcccctcagtgt
cctggagacgcaggtgtttatgtatcactgcccatatcatagtgttcctg
tgataatgtggtgtcaattggcagctatagaagcaattgtgctctaagag
ttgatttctgatgtctttatcaaaactaggactttacacccatgatagta
ctttttatgatttggcttctccaatgcaaagtaaggggtatctgatttca
tgaaatcaatatagtttgctttaaacagctacaaagtagagatattggct
aagtgtggaaagccttaaacagtgatgggaacaggtgtgtcaggaaataa
aaccaaaaaagagggctaggcaaaaagaatataaataaaatttgatgtgt
tgtataatatttgctatgtgaaagatatgggagattaaaggattaactgg
aggtgagggcagtggacaataagtataataaataatagttgggtaaacca
aaacaaagtacacatgaaaaaactttaataggaaccagctaattagtaag
ctaattctcaaaatatgttttaaaagattaaatgagcttgagacttgttt
ctgcattcatgagcctatgcagacacgttattcatgactatcacaggcga
ggcacagatgccccctataaattatctcagcatatgaggagctcaaccac
aacagattacactctcctatttcttacatatctaattggtaaagaatgat
tctgctgaaatacacccacttt
gaattcttggcaaagggcaaagcctttgagcaaaaggatggatttcagac
cagtcttccatttcctaatttgtcttcttactagagacaaaaccatgtgg
ataaaattaggaaatttagactattagagcaaggcagtgttctggaacag
aaaagcacggtatattgtaggcactcctcttagatgtgatattggccagg
agccttactgaaattaaagtggaaaagctcaatcaaaaccatagtcatct
gatgaatctttacttttcgtctgttctttatacattcacgcatctctcct
tcctcagctccccacactcttgtgtctcgtaatatgccttgcttggatat
agagccttttatagaagtaataacatataaatgatgtcataagattgatc
tccaatatgagatttgtatttattaaaaaaaaaaaaaggacattggaaac
aggcactaagttggaaggcacgtgaccatgaaagctggaatagagatgac
ttgtctagagccaggaaatgtcagaaattaccagaaatgcacagtggctt
aggcaagagttatagtcctcagaactgaatggaaccttccagttccttga
ttataaggatttttgccaatactcttatgtcatcaatttttaatgagact
accactttgctgttctgagttgcagctgtcctggaaaactggtataccat
caccttgacacttatctaatggacttgttatatatgtagaagatttttgt
acctgtttatagtttacctatatattatcaatataggcatatgaaatcac
acacacacacacacacacacacacacacgcaaatatatgaaaaaaaacag
aacatttgtatcagtgatagaagtcagaggttattgattgggtttatttt
tatcactttagttttgaaaaatagaaaaaaatggttcatcatgcagttaa
gagttaattgtagtttgctgctttattaaaggacattctgagaatactcc
tgtttgtggttttatcataatgtaagaatcctaaagtgtctttcacatca
tgtctaagaatatatattagtcacctcatatggatcctgaataaaaagag
aatgcaactagacgaaacaggcatggttgcctcccgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11791972_11793159
seq2: B6Ng01-191G24.b_42_1213

seq1  GAATTCTACAGGAATGTTGGGGAAATTGGGGAAGCGCTGAGGGAGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGGAATGTTGGGGAAATTGGGGAAGCGCTGAGGGAGTGAAA  50

seq1  ATATATGATCCAAAAATAATATATGAAAAATTAATAAAAAGGTTTAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGATCCAAAAATAATATATGAAAAATTAATAAAAAGGTTTAAAGA  100

seq1  ATAAACAAGTGAGCATGTTTCTAAATATTAATTAAAGTCTTTGCATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGTGAGCATGTTTCTAAATATTAATTAAAGTCTTTGCATTTAA  150

seq1  AACAACAGTTATTCAATTTAAAATTAACCATTTTGTCTCATCCTTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGTTATTCAATTTAAAATTAACCATTTTGTCTCATCCTTGTATT  200

seq1  GGTCTCCTTGCTGTGTTCAGCTAGTACAGGGTGTAACATAGTGCCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTTGCTGTGTTCAGCTAGTACAGGGTGTAACATAGTGCCCTTTT  250

seq1  CTCATACACAGACTGAAAAATATTCTGCAAAAATTTCTTTCAAGCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACACAGACTGAAAAATATTCTGCAAAAATTTCTTTCAAGCAGTGT  300

seq1  TTGAATTGACAGAGTTTGGTAAACTTAAAATTTGTTTCCTCACAGTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGACAGAGTTTGGTAAACTTAAAATTTGTTTCCTCACAGTTCTT  350

seq1  TGAAACTAAGTTCTTGATGTGTTTCTCTATATATTGGTTCTAGTAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAAGTTCTTGATGTGTTTCTCTATATATTGGTTCTAGTAGCTGA  400

seq1  TAACTTATGTGAGAACGGAATAAAGTGCAGGTTTTATTTCCCCTCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATGTGAGAACGGAATAAAGTGCAGGTTTTATTTCCCCTCAGTGT  450

seq1  CCTGGAGACGCAGGTGTTTATGTATCACTGCCCATATCATAGTGTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGACGCAGGTGTTTATGTATCACTGCCCATATCATAGTGTTCCTG  500

seq1  TGATAATGTGGTGTCAATTGGCAGCTATAGAAGCAATTGTGCTCTAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGTGGTGTCAATTGGCAGCTATAGAAGCAATTGTGCTCTAAGAG  550

seq1  TTGATTTCTGATGTCTTTATCAAAACTAGGACTTTACACCCATGATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTGATGTCTTTATCAAAACTAGGACTTTACACCCATGATAGTA  600

seq1  CTTTTTATGATTTGGCTTCTCCAATGCAAAGTAAGGGGTATCTGATTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATGATTTGGCTTCTCCAATGCAAAGTAAGGGGTATCTGATTTCA  650

seq1  TGAAATCAATATAGTTTGCTTTAAACAGCTACAAAGTAGAGATATTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAATATAGTTTGCTTTAAACAGCTACAAAGTAGAGATATTGGCT  700

seq1  AAGTGTGGAAAGCCTTAAACAGTGATGGGAACAGGTGTGTCAGGAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGAAAGCCTTAAACAGTGATGGGAACAGGTGTGTCAGGAAATAA  750

seq1  AACCAAAAAAGAGGGCTAGGCAAAAAGAATATAAATAAAATTTGATGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAAAGAGGGCTAGGCAAAAAGAATATAAATAAAATTTGATGTGT  800

seq1  TGTATAATATTTGCTATGTGAAAGATATGGGAGATTAAAGGATTAACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATATTTGCTATGTGAAAGATATGGGAGATTAAAGGATTAACTGG  850

seq1  AGGTGAGGGCAGTGGACAATAAGTATAATAAATAATAGTTGGGTAAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGGCAGTGGACAATAAGTATAATAAATAATAGTTGGGTAAACCA  900

seq1  AAACAAAGTACACATGAAAAAAC-TTAATAGGAACCAGCTAATTAGTAAG  949
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAACAAAGTACACATGAAAAAACTTTAATAGGAACCAGCTAATTAGTAAG  950

seq1  CTAA-TCTCAAAATATGTTTTAAAAGATTAAATGAGCTTGAGAACTTG-T  997
      |||| ||||||||||||||||||||||||||||||||||||| ||||| |
seq2  CTAATTCTCAAAATATGTTTTAAAAGATTAAATGAGCTTGAG-ACTTGTT  999

seq1  TCTGCATTCATGAGCCTATGCAGACACGTTTATTCAATGACTATCACAAG  1047
      |||||||||||||||||||||||||||| |||||| ||||||||||| ||
seq2  TCTGCATTCATGAGCCTATGCAGACACG-TTATTC-ATGACTATCAC-AG  1046

seq1  GCGAGGCACAAGATGCCTCCCTATAATTTATTCCTCAGGCCATATGAGGA  1097
      ||||||||| ||||||| |||||||| ||||  |||||  ||||||||||
seq2  GCGAGGCAC-AGATGCC-CCCTATAAATTAT--CTCAG--CATATGAGGA  1090

seq1  AGGCTCCAAAACCAC-ACAGATTACCACTCTCCTTATTTCCTTACCATAT  1146
        ||||   |||||| |||||||| |||||||| ||||| |||| |||||
seq2  --GCTC---AACCACAACAGATTA-CACTCTCC-TATTT-CTTA-CATAT  1131

seq1  CTATATGGTAAAG-ATGATTCTGCTGAAAATACCACCCACTTT  1188
      |||  |||||||| |||||||||||| ||||| ||||||||||
seq2  CTAATTGGTAAAGAATGATTCTGCTG-AAATA-CACCCACTTT  1172

seq1: chr5_11970108_11971239
seq2: B6Ng01-191G24.g_65_1201 (reverse)

seq1  CCGGGAGCAAACCCATCCCTGTTCTGTCTAGTTACA-TCTCTTTT--ATC  47
      |||||||  || |||| ||||||  |||||||| || ||||||||   ||
seq2  CCGGGAGGCAA-CCATGCCTGTTTCGTCTAGTTGCATTCTCTTTTTATTC  49

seq1  AGGATCCCATAATGA-GTGACTA--ATATATTC-TAGACATGATTGTGAA  93
      ||||| |||| |||| |||||||  |||||||| ||||||||| ||||||
seq2  AGGAT-CCAT-ATGAGGTGACTAATATATATTCTTAGACATGA-TGTGAA  96

seq1  AGAACACTTTAGGATCTTAACATAATGATAAAACCACAAACA-GAGTA-T  141
      || ||||||||||||  | |||| |||||||||||||||||| ||||| |
seq2  AG-ACACTTTAGGATTCTTACATTATGATAAAACCACAAACAGGAGTATT  145

seq1  CTCAGAATGTCCTTTAATAAAGCAGCAAAACTACAATTAACTCTTAACTG  191
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCAGAATGTCCTTTAATAAAGCAGC-AAACTACAATTAACTCTTAACTG  194

seq1  CATGATG-ACCATTTTTTTCTA-TTTTCAAAACTAAAGTGATAAAAATAA  239
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  CATGATGAACCATTTTTTTCTATTTTTCAAAACTAAAGTGATAAAAATAA  244

seq1  ACCCAATCAATAACCTCTGACTTCTATCACTGATACAAATGTTCTGTTTT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATCAATAACCTCTGACTTCTATCACTGATACAAATGTTCTGTTTT  294

seq1  TTTTCATATATTTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATATTTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTT  344

seq1  CATATGCCTATATTGATAATATATAGGTAAACTATAAACAGGTACAAAAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCTATATTGATAATATATAGGTAAACTATAAACAGGTACAAAAA  394

seq1  TCTTCTACATATATAACAAGTCCATTAGATAAGTGTCAAGGTGATGGTAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACATATATAACAAGTCCATTAGATAAGTGTCAAGGTGATGGTAT  444

seq1  ACCAGTTTTCCAGGACAGCTGCAACTCAGAACAGCAAAGTGGTAGTCTCA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTTTCCAGGACAGCTGCAACTCAGAACAGCAAAGTGGTAGTCTCA  494

seq1  TTAAAAATTGATGACATAAGAGTATTGGCAAAAATCCTTATAATCAAGGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTGATGACATAAGAGTATTGGCAAAAATCCTTATAATCAAGGA  544

seq1  ACTGGAAGGTTCCATTCAGTTCTGAGGACTATAACTCTTGCCTAAGCCAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGGTTCCATTCAGTTCTGAGGACTATAACTCTTGCCTAAGCCAC  594

seq1  TGTGCATTTCTGGTAATTTCTGACATTTCCTGGCTCTAGACAAGTCATCT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTTCTGGTAATTTCTGACATTTCCTGGCTCTAGACAAGTCATCT  644

seq1  CTATTCCAGCTTTCATGGTCACGTGCCTTCCAACTTAGTGCCTGTTTCCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCAGCTTTCATGGTCACGTGCCTTCCAACTTAGTGCCTGTTTCCA  694

seq1  ATGTCCTTTTTTTTTTTTTAATAAATACAAATCTCATATTGGAGATCAAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTTTTTTTTTTTTAATAAATACAAATCTCATATTGGAGATCAAT  744

seq1  CTTATGACATCATTTATATGTTATTACTTCTATAAAAGGCTCTATATCCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGACATCATTTATATGTTATTACTTCTATAAAAGGCTCTATATCCA  794

seq1  AGCAAGGCATATTACGAGACACAAGAGTGTGGGGAGCTGAGGAAGGAGAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCATATTACGAGACACAAGAGTGTGGGGAGCTGAGGAAGGAGAG  844

seq1  ATGCGTGAATGTATAAAGAACAGACGAAAAGTAAAGATTCATCAGATGAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTGAATGTATAAAGAACAGACGAAAAGTAAAGATTCATCAGATGAC  894

seq1  TATGGTTTTGATTGAGCTTTTCCACTTTAATTTCAGTAAGGCTCCTGGCC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTTGATTGAGCTTTTCCACTTTAATTTCAGTAAGGCTCCTGGCC  944

seq1  AATATCACATCTAAGAGGAGTGCCTACAATATACCGTGCTTTTCTGTTCC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCACATCTAAGAGGAGTGCCTACAATATACCGTGCTTTTCTGTTCC  994

seq1  AGAACACTGCCTTGCTCTAATAGTCTAAATTTCCTAATTTTATCCACATG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTGCCTTGCTCTAATAGTCTAAATTTCCTAATTTTATCCACATG  1044

seq1  GTTTTGTCTCTAGTAAGAAGACAAATTAGGAAATGGAAGACTGGTCTGAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCTCTAGTAAGAAGACAAATTAGGAAATGGAAGACTGGTCTGAA  1094

seq1  ATCCATCCTTTTGCTCAAAGGCTTTGCCCTTTGCCAAGAATTC  1132
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCTTTTGCTCAAAGGCTTTGCCCTTTGCCAAGAATTC  1137