BAC Information

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BAC

Clone NameB6Ng01-192H08
Chromosome5 (Build37)
Map Location 93,442,333 - 93,605,302
singlet/doubletdoublet
Overlap geneAnkrd56, Sept11
Upstream geneCdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798
Downstream geneCcni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192H08.bB6Ng01-192H08.g
ACCGA015694GA015695
length9201,100
definitionB6Ng01-192H08.b B6Ng01-192H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,442,333 - 93,443,021)(93,604,207 - 93,605,302)
sequence
gaattcccgtgtctacctccaagtgctagcattacagctaggctcagcct
cttcctctttgtgttaaagaatttaatattggattttaatttctgatgag
tataaaataaataacattaaaagaatcttcaaaaatgtgaagaaaagaaa
atctttaatggcttctgttagcatacccgtcttatggctctgcccacaag
accttctacccaaaatctgtcctgcctacaagactcacagcgataaagat
ggagcagggatggagagaatagccaaccaatgattgacccaacttgagac
ccaccccatgggagaaagccaacccctgacactgttaatgatactctgct
attcttgcacacaggaacctagcatagctgtcttctgagaggcttcatcc
agcagctgatggaacagatgcagacacccacagccaaacatcaggcagag
tttgagaagtcttgtggaaaagtggatagtcttgtggataggattgagga
agctggagaggtcaaggataccataagacctgtagagtggactaacctgc
ccccatgagggctcacagagactgaaccaccaaccaaagagcatgtgtgg
actggtcctaggacccctacacatttgtagcagatgtgtagcttggtctt
tgtgatggtttgtatatgctaggcccagggagcagcactattaggaggtg
tggtcttgttagagtaggtgtgccactgtgggcgtgtgtttttagacctt
tattctagctgcctgggaagccagtattctcctagaaaccttcaaatgaa
gatgtagaaactctcagctctgcctgtaccatgacactctggacgttgcc
atgctcccaccttaatgggactgaacctctgaacctgtaagccagcccca
attatgagagttgccttggg
gaattctcccctgaagtgaacttaggattgccatgatttttgataccaaa
agtttgaataacaaatacaaaatgcaggagtggctagttggaattcccca
cccccaaaacgagcagaaccccctccccaaacaacttcggtaagggatgc
aggtaacagagtcaaataaaaaaaaaaatggttcctgaatttaaaggtag
gatgcccacttctttctctcaagaggcagatggtcagctgaaaaataaaa
acaccgtatcaataggacattccggagggagaactgcagccacctctgtg
catgcaatagcattttttttttaatcccacaccagaaaaacccacaaaac
caacagaaggcagcaagggttggcccactctgatgacctgctgatagctg
aggatcctgatgggttggtgagagttgcccataggatcgagaccaggaat
accatgggctacgtttgccccacagatgatgacaacaacctcaagtgagg
cacaggccctcctcggtccttaaggtcttagatcaggaggttcaagaaaa
cggcagctaagccacaggattccaaccccaaatcccggggtttgggccta
agttttctatcccactcttttcattaatatagcgttactatttttggtag
ttgaagtcacttcggtagccactgagggtggtggtttgtaaacagacatt
gacatttacaaacagcagtgcaatatttgacccagactttaaagaatggg
aggcgatggtgggagatgaggtaactcttccccaactcgagtggacagac
agctcccgctcttctaatgctgtccattaagagagagtagggcttgtcaa
cgggatggctacataaagaagaagctacagaagagaaaaaagaaaggttc
agttcaaattgattcttaaagcggaaaaaaaaaaaagcacttcctcctac
aaccagcggtgaaagtagcagtctgttcagttaagggccagtgtcatcag
gcatggtttggtggagggagtaaggtggactaagcatgtggcactcaggg
cccagggaggggagaatgctctgctgaaccttggagggtcatcatgtact

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_93442333_93443021
seq2: B6Ng01-192H08.b_43_731

seq1  GAATTCCCGTGTCTACCTCCAAGTGCTAGCATTACAGCTAGGCTCAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGTGTCTACCTCCAAGTGCTAGCATTACAGCTAGGCTCAGCCT  50

seq1  CTTCCTCTTTGTGTTAAAGAATTTAATATTGGATTTTAATTTCTGATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTTGTGTTAAAGAATTTAATATTGGATTTTAATTTCTGATGAG  100

seq1  TATAAAATAAATAACATTAAAAGAATCTTCAAAAATGTGAAGAAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAAATAACATTAAAAGAATCTTCAAAAATGTGAAGAAAAGAAA  150

seq1  ATCTTTAATGGCTTCTGTTAGCATACCCGTCTTATGGCTCTGCCCACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAATGGCTTCTGTTAGCATACCCGTCTTATGGCTCTGCCCACAAG  200

seq1  ACCTTCTACCCAAAATCTGTCCTGCCTACAAGACTCACAGCGATAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTACCCAAAATCTGTCCTGCCTACAAGACTCACAGCGATAAAGAT  250

seq1  GGAGCAGGGATGGAGAGAATAGCCAACCAATGATTGACCCAACTTGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGGATGGAGAGAATAGCCAACCAATGATTGACCCAACTTGAGAC  300

seq1  CCACCCCATGGGAGAAAGCCAACCCCTGACACTGTTAATGATACTCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCATGGGAGAAAGCCAACCCCTGACACTGTTAATGATACTCTGCT  350

seq1  ATTCTTGCACACAGGAACCTAGCATAGCTGTCTTCTGAGAGGCTTCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCACACAGGAACCTAGCATAGCTGTCTTCTGAGAGGCTTCATCC  400

seq1  AGCAGCTGATGGAACAGATGCAGACACCCACAGCCAAACATCAGGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGATGGAACAGATGCAGACACCCACAGCCAAACATCAGGCAGAG  450

seq1  TTTGAGAAGTCTTGTGGAAAAGTGGATAGTCTTGTGGATAGGATTGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAGTCTTGTGGAAAAGTGGATAGTCTTGTGGATAGGATTGAGGA  500

seq1  AGCTGGAGAGGTCAAGGATACCATAAGACCTGTAGAGTGGACTAACCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGAGGTCAAGGATACCATAAGACCTGTAGAGTGGACTAACCTGC  550

seq1  CCCCATGAGGGCTCACAGAGACTGAACCACCAACCAAAGAGCATGTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGAGGGCTCACAGAGACTGAACCACCAACCAAAGAGCATGTGTGG  600

seq1  ACTGGTCCTAGGACCCCTACACATTTGTAGCAGATGTGTAGCTTGGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCCTAGGACCCCTACACATTTGTAGCAGATGTGTAGCTTGGTCTT  650

seq1  TGTGATGGTTTGTATATGCTAGGCCCAGGGAGCAGCACT  689
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGTTTGTATATGCTAGGCCCAGGGAGCAGCACT  689

seq1: chr5_93604207_93605302
seq2: B6Ng01-192H08.g_66_1165 (reverse)

seq1  AGTACATGGATGACCCT-CAGTGTCCAGCAGAGGCATCTTCCCCTCCCT-  48
      ||||||| ||||||||| ||  || ||||||| ||||  |||||||||| 
seq2  AGTACAT-GATGACCCTCCAAGGTTCAGCAGA-GCATTCTCCCCTCCCTG  48

seq1  GGCCCTGAGTGCCCACATTGCTAGTCCACC-TACTCC--TCACCAAACCA  95
      ||||||||||| ||||||   ||||||||| ||||||   ||||||||||
seq2  GGCCCTGAGTG-CCACATGCTTAGTCCACCTTACTCCCTCCACCAAACCA  97

seq1  TGCCTGATGACACTGGCCCTTTAACTG-ACAGACTGCTACTTTCACCGCT  144
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  TGCCTGATGACACTGGCCC-TTAACTGAACAGACTGCTACTTTCACCGCT  146

seq1  GGTTGTAG--AGAAGTGCTTTTTTTTTTTTCCGCTTTAAGAATCAATTTG  192
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAGGAGGAAGTGCTTTTTTTTTTTTCCGCTTTAAGAATCAATTTG  196

seq1  AACCTGAACCTTTCTTTTTTCTCTTCTGTAGCTTCTTCTTTATGTAGCCA  242
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-CTGAACCTTTCTTTTTTCTCTTCTGTAGCTTCTTCTTTATGTAGCCA  245

seq1  TCCCGTTGACAAGCCCTACTCTCTCTTAATGGACAGCATTAGAAGAGCGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTTGACAAGCCCTACTCTCTCTTAATGGACAGCATTAGAAGAGCGG  295

seq1  GAGCTGTCTGTCCACTCGAGTTGGGGAAGAGTTACCTCATCT-CCACCAT  341
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGCTGTCTGTCCACTCGAGTTGGGGAAGAGTTACCTCATCTCCCACCAT  345

seq1  CGCCTCCCATTCTTTAAAGTCTGGGTCAAATATTGCACTGCTGTTTGTAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCCCATTCTTTAAAGTCTGGGTCAAATATTGCACTGCTGTTTGTAA  395

seq1  ATGTCAATGTCTGTTTACAAACCACCACCCTCAGTGGCTACCGAAGTGAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAATGTCTGTTTACAAACCACCACCCTCAGTGGCTACCGAAGTGAC  445

seq1  TTCAACTACCAAAAATAGTAACGCTATATTAATGAAAAGAGTGGGATAGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTACCAAAAATAGTAACGCTATATTAATGAAAAGAGTGGGATAGA  495

seq1  AAACTTAGGCCCAAACCCCGGGATTTGGGGTTGGAATCCTGTGGCTTAGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGGCCCAAACCCCGGGATTTGGGGTTGGAATCCTGTGGCTTAGC  545

seq1  TGCCGTTTTCTTGAACCTCCTGATCTAAGACCTTAAGGACCGAGGAGGGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTTTTCTTGAACCTCCTGATCTAAGACCTTAAGGACCGAGGAGGGC  595

seq1  CTGTGCCTCACTTGAGGTTGTTGTCATCATCTGTGGGGCAAACGTAGCCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCTCACTTGAGGTTGTTGTCATCATCTGTGGGGCAAACGTAGCCC  645

seq1  ATGGTATTCCTGGTCTCGATCCTATGGGCAACTCTCACCAACCCATCAGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATTCCTGGTCTCGATCCTATGGGCAACTCTCACCAACCCATCAGG  695

seq1  ATCCTCAGCTATCAGCAGGTCATCAGAGTGGGCCAACCCTTGCTGCCTTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGCTATCAGCAGGTCATCAGAGTGGGCCAACCCTTGCTGCCTTC  745

seq1  TGTTGGTTTTGTGGGTTTTTCTGGTGTGGGATTAAAAAAAAAATGCTATT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTTTGTGGGTTTTTCTGGTGTGGGATTAAAAAAAAAATGCTATT  795

seq1  GCATGCACAGAGGTGGCTGCAGTTCTCCCTCCGGAATGTCCTATTGATAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACAGAGGTGGCTGCAGTTCTCCCTCCGGAATGTCCTATTGATAC  845

seq1  GGTGTTTTTATTTTTCAGCTGACCATCTGCCTCTTGAGAGAAAGAAGTGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTTATTTTTCAGCTGACCATCTGCCTCTTGAGAGAAAGAAGTGG  895

seq1  GCATCCTACCTTTAAATTCAGGAACCATTTTTTTTTTTATTTGACTCTGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTACCTTTAAATTCAGGAACCATTTTTTTTTTTATTTGACTCTGT  945

seq1  TACCTGCATCCCTTACCGAAGTTGTTTGGGGAGGGGGTTCTGCTCGTTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCATCCCTTACCGAAGTTGTTTGGGGAGGGGGTTCTGCTCGTTTT  995

seq1  GGGGGTGGGGAATTCCAACTAGCCACTCCTGCATTTTGTATTTGTTATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGGGAATTCCAACTAGCCACTCCTGCATTTTGTATTTGTTATTC  1045

seq1  AAACTTTTGGTATCAAAAATCATGGCAATCCTAAGTTCACTTCAGGGGAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTGGTATCAAAAATCATGGCAATCCTAAGTTCACTTCAGGGGAG  1095

seq1  AATTC  1096
      |||||
seq2  AATTC  1100