BAC Information

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BAC

Clone NameB6Ng01-194M13
Chromosome5 (Build37)
Map Location 86,844,562 - 86,845,696
singlet/doubletsinglet
Overlap geneTmprss11a
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d
Downstream gene9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194M13.bB6Ng01-194M13.g
ACCGA017384GA017385
length1,1301,215
definitionB6Ng01-194M13.b B6Ng01-194M13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttttctcagctatggactagataggaaatcatgatactctgat
tggcagaactccagcagggcctcaagattcgtgtgttatctctttttctc
caagcatggatgggatggactaggtgaaagtgatgaaaataatttttata
attaaatttaaattataggtgtcaaagtgttgagatttttttttcttttt
ttggtttttagagacagggtttctcagtatagccctggctgtcctggaac
tcactttgtagacctgtctggccttgaattcagaaatctgcctgcttctg
cctcctgagtgctgagattaaaggtgtgcgccattatataaaataatatc
ttcaaacagattgactttggcataatcaaactggagattttccaaggcag
acctggtccaatcaggtgaggtttataatttctccatgtttgctcgcaca
tgtttgctgaggaggcaagctctatagctgcaagaaacagaatgtaagca
cccagtctggaaggaaatcttgagctacacatgaggctaggctcaaacta
ctgttctgagagactcagaaaagaagatccaataacctgaacttctgacc
tgttgtagaaattattaaatcccaaactggggtttatactttaaatactt
tgggtatttaagttactggatgagaacacacacacacacacacacacaca
cacataaaacctttatatttataataaagatctttatatttataataagc
cttaaacagcacaatggttaggtgaatacctaccttccatgttattagaa
tctacttttctattgataaccctaagctgatcatccctgatctcaagccc
aggaaaattaaaccctgcctatgtcttttctgcccagctattggctgtca
acatctttatttaccaatcagaaataacttggggacagggtctcaagggc
tagtgcagactccaggtcctgcatttgcattacaataaacagtaaaaagc
aaactcaacatttctcttttacttcaatgaaagcctcttttctctcagat
ataaaaatctgtaaatatagatggacatatttttatttataactagtcta
tttataattgcaatttagatagaaaatctt
gaattcatcttggctctgagctgatggtatggccacatggcaagccagaa
agtcgcttcagaatgctgtgtctctgtgttgctggctgtcttcatgacat
tctgagcccacagaagagttctccttcaaacattttcctggaaaaaaagt
tgtttattttcttttatgtgtacaagttcagccttggaaactagtcttca
ttcacaatgatagtgactcttatctaggatatatacattcttttattttt
gtttactgttattcatttatataaaaggcagtcatatttatgtcatggct
tacatcagttctagataacatgctgtggcatactgttctttttctgaaga
aagcttctggtcgctgtcatgtcttgttcatataactgttttaaaatatc
tttcaaggaaggacagatagaagtataaagagggataggaaaaaaattga
gcaagaaggactaagttaggtcagggtaggaggatagcataaaggaagga
gaatagggaaggagagctaacataaagtcctttgaaaaagtagtatgaga
accaacttctgtagacatacaaacaatatgcactgaatagaatttaaagg
taccttataaaagtaggccaatatttctcttagacacaataagggatcag
ataaaaaagccagggtcagaaattagttatctcttttgcaattgttgatc
agtaggttactaggtgtcctcaaatactacagactcttgtcattgctctt
ggttactttctagaacttgatagtaagatcccattgatgaagatatcaca
tacttgagtcatagaacttggagaaataaatctggtactgacctaggagc
tacatctttattggcaggtttccattatgctggaaggagaaaagtaaagt
tgatcttacccagctgtgaagcctgtgagttatgttagtgtttggccaga
cagatatgccttctggagcaacagttgcacaaacggatgagagtaccatc
cactttctgatttcattagcatgatccacagtgaatacatgctgcacagt
aataaaggacaaaaattctatggctaaaagtcataggtcctcagggagac
tataactatctatttctggctaatgaacataaacctaaactgccttcagt
gactgatccaggtatatatagacatgtcatctctctaatccatccatcct
agggaaacatcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86844562_86845696
seq2: B6Ng01-194M13.b_42_1171

seq1  GAATTCTTTTTCTCAGCTATGGACTAGATAGGAAATCATGATACTCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTCAGCTATGGACTAGATAGGAAATCATGATACTCTGAT  50

seq1  TGGCAGAACTCCAGCAGGGCCTCAAGATTCGTGTGTTATCTCTTTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAACTCCAGCAGGGCCTCAAGATTCGTGTGTTATCTCTTTTTCTC  100

seq1  CAAGCATGGATGGGATGGACTAGGTGAAAGTGATGAAAATAATTTTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGGATGGGATGGACTAGGTGAAAGTGATGAAAATAATTTTTATA  150

seq1  ATTAAATTTAAATTATAGGTGTCAAAGTGTTGAGATTTTTTTTTCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTAAATTATAGGTGTCAAAGTGTTGAGATTTTTTTTTCTTTTT  200

seq1  TTGGTTTTTAGAGACAGGGTTTCTCAGTATAGCCCTGGCTGTCCTGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTAGAGACAGGGTTTCTCAGTATAGCCCTGGCTGTCCTGGAAC  250

seq1  TCACTTTGTAGACCTGTCTGGCCTTGAATTCAGAAATCTGCCTGCTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGTAGACCTGTCTGGCCTTGAATTCAGAAATCTGCCTGCTTCTG  300

seq1  CCTCCTGAGTGCTGAGATTAAAGGTGTGCGCCATTATATAAAATAATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGAGTGCTGAGATTAAAGGTGTGCGCCATTATATAAAATAATATC  350

seq1  TTCAAACAGATTGACTTTGGCATAATCAAACTGGAGATTTTCCAAGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAGATTGACTTTGGCATAATCAAACTGGAGATTTTCCAAGGCAG  400

seq1  ACCTGGTCCAATCAGGTGAGGTTTATAATTTCTCCATGTTTGCTCGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTCCAATCAGGTGAGGTTTATAATTTCTCCATGTTTGCTCGCACA  450

seq1  TGTTTGCTGAGGAGGCAAGCTCTATAGCTGCAAGAAACAGAATGTAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTGAGGAGGCAAGCTCTATAGCTGCAAGAAACAGAATGTAAGCA  500

seq1  CCCAGTCTGGAAGGAAATCTTGAGCTACACATGAGGCTAGGCTCAAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTGGAAGGAAATCTTGAGCTACACATGAGGCTAGGCTCAAACTA  550

seq1  CTGTTCTGAGAGACTCAGAAAAGAAGATCCAATAACCTGAACTTCTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGAGAGACTCAGAAAAGAAGATCCAATAACCTGAACTTCTGACC  600

seq1  TGTTGTAGAAATTATTAAATCCCAAACTGGGGTTTATACTTTAAATACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAGAAATTATTAAATCCCAAACTGGGGTTTATACTTTAAATACTT  650

seq1  TGGGTATTTAAGTTACTGGATGAGAACACACACACACACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATTTAAGTTACTGGATGAGAACACACACACACACACACACACACA  700

seq1  CACATAAAACCTTTATATTTATAATAAAGATCTTTATATTTATAATAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAACCTTTATATTTATAATAAAGATCTTTATATTTATAATAAGC  750

seq1  CTTAAACAGCACAATGGTTAGGTGAATACCTACCTTCCATGTTATTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACAGCACAATGGTTAGGTGAATACCTACCTTCCATGTTATTAGAA  800

seq1  TCTACTTTTCTATTGATAACCCTAAGCTGATCATCCCTGATCTCAAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTTCTATTGATAACCCTAAGCTGATCATCCCTGATCTCAAGCCC  850

seq1  AGGAAAATTAAACCCTGCCTATGTCTTTTCTGCCCAGCTATTGGCTGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATTAAACCCTGCCTATGTCTTTTCTGCCCAGCTATTGGCTGTCA  900

seq1  ACATCTTTATTTACCAATCAGAAATAACTTGGGGACAGGGTCTCAAGGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTATTTACCAATCAGAAATAACTTGGGGACAGGGTCTCAAGGGC  950

seq1  TAGTGCAGACTCCAGGTCCTGCATTTGCATTACAATAAACAGTAAAAAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAGACTCCAGGTCCTGCATTTGCATTACAATAAACAGTAAAAAGC  1000

seq1  AAAACCTCAACAATTTCTCCTTTTACTCCAATGAAAGGCTCTTTTCTCTC  1050
      |||  |||||| |||||| |||||||| ||||||||| ||||||||||||
seq2  AAA--CTCAAC-ATTTCT-CTTTTACTTCAATGAAAGCCTCTTTTCTCTC  1046

seq1  AGATAT-AAAATCTGTAAATTATAAGGTATGACATATTTTTA-TTATAAC  1098
      |||||| |||||||||||| ||||  |   |||||||||||| |||||||
seq2  AGATATAAAAATCTGTAAA-TATA--GATGGACATATTTTTATTTATAAC  1093

seq1  TAGTCTA-TTATATTTGGCAATTTAGATAGAATATCTT  1135
      ||||||| ||||| || ||||||||||||||| |||||
seq2  TAGTCTATTTATAATT-GCAATTTAGATAGAAAATCTT  1130