BAC Information

Click to search

BAC

Clone NameB6Ng01-195M04
Chromosome5 (Build37)
Map Location 51,698,616 - 51,837,091
singlet/doubletdoublet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15, Sod3, Gm447, LOC100041805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195M04.bB6Ng01-195M04.g
ACCGA018088GA018089
length9521,159
definitionB6Ng01-195M04.b B6Ng01-195M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,698,616 - 51,699,565)(51,835,940 - 51,837,091)
sequence
gaattcaacaattgaattatataagaatttacgatttaaataaaaagcag
atgcaaataccattatagttctcataaaaaagctaaaaattaggcacaat
tattataaaatataagttaaaaattaccattgtccagaaagcaatagatc
ttattattaaaaacaaaaatattgactgtataaagtgaagaacttaatag
aatatgtaagacaaaatttaaaatagcgtcagttacaataatttcattaa
aagccataaaagcaagaagagacattgtctgaaaaatgatcatggatgaa
gagaaaaatctcaaagaaaaatctcaaaaattatcaaagtaaattttata
ttccttttaaaagcttacagaggaaataaaagtatatgcaaagtaatata
cacacacatacacacatatatgagatgtctcataaatagtaaagcataaa
aattgaacagaaaatatagtaagagatataatgaaagaaaactttataaa
agagaatgtgaatctgctataatacaagtaataacaaataatgaaatagc
tctctaggcaattagtggtgtcagaaagaaaaaatctctgattgactcag
attattatttgttcatccattttattgaaaagcaatatcatacaatcctt
gagataagataagatcagataatctggaagctttacaaagtctttaggaa
gttggggatgctgtagcgaagaattcttagctttaaaaatatagtttcaa
tggactctttcacaaaccaattaatgaaaaaaattcagcctgaaaataag
aatgggaaataaaactattaaatttggtacttcagaaaaataaggtaaat
tgtggatcagaatatacatggtccttaactgtactatgggattgtgatat
aaactgtaagcattgcccaaagggggagttggaggtggaggtggtgggga
tt

gaattcatggcaagtcacatattcctcccccatcattcttctgatcccaa
agaaacccaagaagaggaagtgtatcctgaactgcttggttttttagact
ctatttgaacagataaagatgcctggagaattaggactgacttcagagcc
tgtttactgcgaatataaaagaggtgctccgagccacaggcggttaaacc
ctgtgttgagacagtccaagtaagaatagagttgttgttgttgttgttgt
ttctgtgatatatatataggtgtcagaagacacctggcctcacagaatat
tagaatatgaaccagaaagcccttaatcagaacattgaaatggcccctca
gatgtggctagaaagggagataatatcaatagaagagtcaggcagagaat
gaattccaaataaccatatgaaagacactggttagcacagagaaaaatta
gacaccttacccactattgctgccatataacagggagggtatatgcagga
aagtgctctatgcaaatgacctataaggactcaatctgctaagcacagaa
taattgagcttctgacttttcttcagctgtggtccagttgctgtcttaat
aaacagtctttgattctaccatgtattgctgtccagtttcttgctccaag
acataagcactaagaaataccaggtggtgcccaccagactcccatgtcta
ccaaaccacttcctgtatagttgagagtgtgccatcaacttcatacacaa
gattgcatttaagtaggttcctttaaactttttctggacatggtctttga
ataccttgccaattatctaaaggagcaattttattcactgctacctccaa
aggaatacctaacccaagtataaagatatatacaatatttgacaaatgaa
aaaagttccttattatattgcagacactgactccatcatgaatgtgacaa
aacataggttcacaagcttaccctgtcctcaagcaagtttgagattcatt
gagtgttaccccatgactttggtgagaacttaggaattattccaatgtta
ttctagaaagacttgcctaactaaggagagagactgaactttgagattta
ccagccactgaccttagcccatgatgtgtagaccatgcaacaggattaaa
tttcttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51698616_51699565
seq2: B6Ng01-195M04.b_45_996

seq1  GAATTCAACAATTGAATTATATAAGAATTTACGATTTAAATAAAAAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAATTGAATTATATAAGAATTTACGATTTAAATAAAAAGCAG  50

seq1  ATGCAAATACCATTATAGTTCTCATAAAAAAGCTAAAAATTAGGCACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATACCATTATAGTTCTCATAAAAAAGCTAAAAATTAGGCACAAT  100

seq1  TATTATAAAATATAAGTTAAAAATTACCATTGTCCAGAAAGCAATAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAAATATAAGTTAAAAATTACCATTGTCCAGAAAGCAATAGATC  150

seq1  TTATTATTAAAAACAAAAATATTGACTGTATAAAGTGAAGAACTTAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTAAAAACAAAAATATTGACTGTATAAAGTGAAGAACTTAATAG  200

seq1  AATATGTAAGACAAAATTTAAAATAGCGTCAGTTACAATAATTTCATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTAAGACAAAATTTAAAATAGCGTCAGTTACAATAATTTCATTAA  250

seq1  AAGCCATAAAAGCAAGAAGAGACATTGTCTGAAAAATGATCATGGATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATAAAAGCAAGAAGAGACATTGTCTGAAAAATGATCATGGATGAA  300

seq1  GAGAAAAATCTCAAAGAAAAATCTCAAAAATTATCAAAGTAAATTTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAATCTCAAAGAAAAATCTCAAAAATTATCAAAGTAAATTTTATA  350

seq1  TTCCTTTTAAAAGCTTACAGAGGAAATAAAAGTATATGCAAAGTAATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTAAAAGCTTACAGAGGAAATAAAAGTATATGCAAAGTAATATA  400

seq1  CACACACATACACACATATATGAGATGTCTCATAAATAGTAAAGCATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATACACACATATATGAGATGTCTCATAAATAGTAAAGCATAAA  450

seq1  AATTGAACAGAAAATATAGTAAGAGATATAATGAAAGAAAACTTTATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACAGAAAATATAGTAAGAGATATAATGAAAGAAAACTTTATAAA  500

seq1  AGAGAATGTGAATCTGCTATAATACAAGTAATAACAAATAATGAAATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGTGAATCTGCTATAATACAAGTAATAACAAATAATGAAATAGC  550

seq1  TCTCTAGGCAATTAGTGGTGTCAGAAAGAAAAAATCTCTGATTGACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGGCAATTAGTGGTGTCAGAAAGAAAAAATCTCTGATTGACTCAG  600

seq1  ATTATTATTTGTTCATCCATTTTATTGAAAAGCAATATCATACAATCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTTGTTCATCCATTTTATTGAAAAGCAATATCATACAATCCTT  650

seq1  GAGATAAGATAAGATCAGATAATCTGGAAGCTTTACAAAGTCTTTAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGATAAGATCAGATAATCTGGAAGCTTTACAAAGTCTTTAGGAA  700

seq1  GTTGGGGATGCTGTAGCGAAGAATTCTTAGCTTTAAAAATATAGTTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGATGCTGTAGCGAAGAATTCTTAGCTTTAAAAATATAGTTTCAA  750

seq1  TGGACTCTTTCACAAACCAATTAATGAAAAAAATTCAGCCTGAAAATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTTTCACAAACCAATTAATGAAAAAAATTCAGCCTGAAAATAAG  800

seq1  AATGGGAAATAAAACTATTAAATTTGGTACTTCAGAAAAATAAGGTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAATAAAACTATTAAATTTGGTACTTCAGAAAAATAAGGTAAAT  850

seq1  TGTGGATCAGAATATACATGGTCCTTAACTGTACTATGGGATTGTGATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATCAGAATATACATGGTCCTTAACTGTACTATGGGATTGTGATAT  900

seq1  AAACTGTAAGCATTGCCCAAAGGGGGAGTTGGAGGTGGAG--TGTGGGGA  948
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  AAACTGTAAGCATTGCCCAAAGGGGGAGTTGGAGGTGGAGGTGGTGGGGA  950

seq1  TT  950
      ||
seq2  TT  952


seq1: chr5_51835940_51837091
seq2: B6Ng01-195M04.g_65_1223 (reverse)

seq1  TAGAAGAAAATTTTACTCCTGTTTGCATGATTCTACACATCATGGGCT-A  49
      |||||||||  |||| ||||| |||||||  ||||||||||||||||| |
seq2  TAGAAGAAA--TTTAATCCTG-TTGCATG-GTCTACACATCATGGGCTAA  46

seq1  GTTCAGTGCCTGTGTAATCTTCAAAG-TCAGTCCTCTCTCCTTAGTTAGG  98
      | |||||| ||| ||||   |||||| ||||| |||||||||||||||||
seq2  GGTCAGTGGCTG-GTAAATCTCAAAGTTCAGT-CTCTCTCCTTAGTTAGG  94

seq1  CAAGTCTTTCTAGA--TACCTTGGAATATTTCCTAGTTCCTCACCCAAGT  146
      ||||||||||||||   || |||||||| ||||||  | |||||| ||||
seq2  CAAGTCTTTCTAGAATAACATTGGAATAATTCCTAAGTTCTCACCAAAGT  144

seq1  CATGGGGGTACACTCATTGAATCTC-AACTTGCCTGAGGACAGGGT-AGC  194
      |||||||  ||||||| |||||||| ||||||| |||||||||||| |||
seq2  CATGGGGTAACACTCAATGAATCTCAAACTTGCTTGAGGACAGGGTAAGC  194

seq1  TTGTGAACCTATG-TTTGTCACATTCATGATGGAGTCAGTGTCTGCAATA  243
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACCTATGTTTTGTCACATTCATGATGGAGTCAGTGTCTGCAATA  244

seq1  TAATA--GGACTTTTTTCATTTGTCAAATATTGTATATATCTTTATACTT  291
      |||||  | |||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGAACTTTTTTCATTTGTCAAATATTGTATATATCTTTATACTT  294

seq1  -GGTTAGGTATTCC-TTGGAGGTAGCAGTGAATAAAATTGCTCC-TTAGA  338
       ||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  GGGTTAGGTATTCCTTTGGAGGTAGCAGTGAATAAAATTGCTCCTTTAGA  344

seq1  TAATTGGCAAGGTATTCAAAGACCATGTCCAGAAAAAGTTT-AAGGAACC  387
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAATTGGCAAGGTATTCAAAGACCATGTCCAGAAAAAGTTTAAAGGAACC  394

seq1  TACTTAAATGCAATCTTGTGTATGAAGTTGATGGCACACTCTCAACTATA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAATGCAATCTTGTGTATGAAGTTGATGGCACACTCTCAACTATA  444

seq1  CAGGAAGTGGTTTGGTAGACATGGGAGTCTGGTGGGCACCACCTGGTATT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTGGTTTGGTAGACATGGGAGTCTGGTGGGCACCACCTGGTATT  494

seq1  TCTTAGTGCTTATGTCTTGGAGCAAGAAACTGGACAGCAATACATGGTAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTGCTTATGTCTTGGAGCAAGAAACTGGACAGCAATACATGGTAG  544

seq1  AATCAAAGACTGTTTATTAAGACAGCAACTGGACCACAGCTGAAGAAAAG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGACTGTTTATTAAGACAGCAACTGGACCACAGCTGAAGAAAAG  594

seq1  TCAGAAGCTCAATTATTCTGTGCTTAGCAGATTGAGTCCTTATAGGTCAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCTCAATTATTCTGTGCTTAGCAGATTGAGTCCTTATAGGTCAT  644

seq1  TTGCATAGAGCACTTTCCTGCATATACCCTCCCTGTTATATGGCAGCAAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAGAGCACTTTCCTGCATATACCCTCCCTGTTATATGGCAGCAAT  694

seq1  AGTGGGTAAGGTGTCTAATTTTTCTCTGTGCTAACCAGTGTCTTTCATAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAAGGTGTCTAATTTTTCTCTGTGCTAACCAGTGTCTTTCATAT  744

seq1  GGTTATTTGGAATTCATTCTCTGCCTGACTCTTCTATTGATATTATCTCC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTGGAATTCATTCTCTGCCTGACTCTTCTATTGATATTATCTCC  794

seq1  CTTTCTAGCCACATCTGAGGGGCCATTTCAATGTTCTGATTAAGGGCTTT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGCCACATCTGAGGGGCCATTTCAATGTTCTGATTAAGGGCTTT  844

seq1  CTGGTTCATATTCTAATATTCTGTGAGGCCAGGTGTCTTCTGACACCTAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCATATTCTAATATTCTGTGAGGCCAGGTGTCTTCTGACACCTAT  894

seq1  ATATATATCACAGAAACAACAACAACAACAACAACTCTATTCTTACTTGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATCACAGAAACAACAACAACAACAACAACTCTATTCTTACTTGG  944

seq1  ACTGTCTCAACACAGGGTTTAACCGCCTGTGGCTCGGAGCACCTCTTTTA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCAACACAGGGTTTAACCGCCTGTGGCTCGGAGCACCTCTTTTA  994

seq1  TATTCGCAGTAAACAGGCTCTGAAGTCAGTCCTAATTCTCCAGGCATCTT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGCAGTAAACAGGCTCTGAAGTCAGTCCTAATTCTCCAGGCATCTT  1044

seq1  TATCTGTTCAAATAGAGTCTAAAAAACCAAGCAGTTCAGGATACACTTCC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTCAAATAGAGTCTAAAAAACCAAGCAGTTCAGGATACACTTCC  1094

seq1  TCTTCTTGGGTTTCTTTGGGATCAGAAGAATGATGGGGGAGGAATATGTG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGGGTTTCTTTGGGATCAGAAGAATGATGGGGGAGGAATATGTG  1144

seq1  ACTTGCCATGAATTC  1152
      |||||||||||||||
seq2  ACTTGCCATGAATTC  1159


| Home | SequenceCutter | Blast | Download |