BAC Information

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BAC

Clone NameB6Ng01-195O23
Chromosome5 (Build37)
Map Location 59,790,665 - 59,791,754
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195O23.bB6Ng01-195O23.g
ACCGA018217GA018218
length1,1061,170
definitionB6Ng01-195O23.b B6Ng01-195O23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctataaaataaagtttaagtcagttatataaatgtttaataattt
tatgtgtgctataattatttattataacactaagtatattagatttttag
tagctatatcatagaagaaatatacatcttatatataaacacacttagga
tgtattaaatatagatttcttttaacattacagaagctattgatatgtat
attgggatgttgcctcatatcctaaacatttgcttagaaaacaggctttt
aaaatttgttataagcttaataaaagctgaaaagcttgataaattaaatg
taccttattcaggtagttttagaattgtaggactcccaaagtttttgaat
attcatagatgtaaaatgagtaataatattatatattttatgaatattca
tatataggtatatatttattatttttaaaacttagtatagtaaacatgtt
aagatctttatatctacagtttttagagaggaacagaaggaagttccaaa
atcaattccaaaaatgttatcatgtgtaaaaatttttgacaacctcaaaa
ttatgtggttgagtttatagaaaatgtcacatcttatctaagcctaagcc
caaattttaagcccttttgagcaaaatcatgaaaaaaaatgaacaattca
aaaacaatgtgttctcatcatcaaagacataagcacagaaatctacaaaa
gggactcaaaacagagcccatgacaccactctctacacttagtaatcaag
tgaccagctctgccagagactgacaaatacagaggtagatgctctcagcc
aaccataggactgagcatggggtccacaatggagtagttagagaaaggac
tgaaggagctgaaaggaatttgcaaccccataggaggaacaacagtgtga
aaccaaccagaccccctcccccaacccccgagctcccagggactaaacca
ccaaccaagagtacacatggaagggatccaggccttccagcagcatatgt
agcagagatgggccttgttgacatcaatgggaggagaggtcctttggttc
ctgtgaagctcgaatgccccaggtcaggggaatgcccagtaagagaaagg
gaagga
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggatgcagatgtagctgtctcttgtgagactatgctggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggagtagctagaaaaagtagcaggagctaaagggatctgcaaccctat
agtgaacacattatgagctacagtaccccggagctctgactctagctgca
tattataatccaaaagaatggtcttagtcgctcatcactggtaagagaag
agtccaatggacttgcagctatattgtccagtacaggggaatacacaagg
gtccataaaagggggggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59790665_59791754
seq2: B6Ng01-195O23.b_45_1150 (reverse)

seq1  ----------TC-CTTCCT-GGCATTCCCCTACACTGGGGCA-TCGAGCC  37
                || ||| || |||||||||||   |||||||| ||||| |
seq2  TCCTTCCCTTTCTCTTACTGGGCATTCCCCTGACCTGGGGCATTCGAG-C  49

seq1  TTCACAGGA--CCAAGGACCTCTCCTCCCATTGATGTCCAACAAGGCCAT  85
      |||||||||  | |||||||||||||||||||||||| ||||||||||  
seq2  TTCACAGGAACCAAAGGACCTCTCCTCCCATTGATGT-CAACAAGGCCCA  98

seq1  CCTCTGCTACATATGCTGCTGG-AGGCCTGGATCCC-TCCATGTGTACTC  133
       ||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  TCTCTGCTACATATGCTGCTGGAAGGCCTGGATCCCTTCCATGTGTACTC  148

seq1  TTTGGTTGGTGGTTTAGTCCCTGGGAGCTCGGGGGTTGGGGGAGGGGGTC  183
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGGTTGGTGGTTTAGTCCCTGGGAGCTCGGGGGTTGGGGGAGGGGGTC  197

seq1  TGGTTGG-TTCACACTGTTGTTCCTCCTATGGGGTTGCAAATTCC-TTCA  231
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGTTGGTTTCACACTGTTGTTCCTCCTATGGGGTTGCAAATTCCTTTCA  247

seq1  GCTCCTTCAGTCCTTTCTCTAACTACTCCATTGTGGACCCCATGCTCAGT  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTCAGTCCTTTCTCTAACTACTCCATTGTGGACCCCATGCTCAGT  297

seq1  CCTATGGTTGGCTGAGAGCATCTACCTCTGTATTTGTCAGTCTCTGGCAG  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGTTGGCTGAGAGCATCTACCTCTGTATTTGTCAGTCTCTGGCAG  347

seq1  AGCTGGTCACTTGATTACTAAGTGTAGAGAGTGGTGTCATGGGCTCTGTT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTCACTTGATTACTAAGTGTAGAGAGTGGTGTCATGGGCTCTGTT  397

seq1  TTGAGTCCCTTTTGTAGATTTCTGTGCTTATGTCTTTGATGATGAGAACA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCCCTTTTGTAGATTTCTGTGCTTATGTCTTTGATGATGAGAACA  447

seq1  CATTGTTTTTGAATTGTTCATTTTTTTTCATGATTTTGCTCAAAAGGGCT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTTTGAATTGTTCATTTTTTTTCATGATTTTGCTCAAAAGGGCT  497

seq1  TAAAATTTGGGCTTAGGCTTAGATAAGATGTGACATTTTCTATAAACTCA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTGGGCTTAGGCTTAGATAAGATGTGACATTTTCTATAAACTCA  547

seq1  ACCACATAATTTTGAGGTTGTCAAAAATTTTTACACATGATAACATTTTT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATAATTTTGAGGTTGTCAAAAATTTTTACACATGATAACATTTTT  597

seq1  GGAATTGATTTTGGAACTTCCTTCTGTTCCTCTCTAAAAACTGTAGATAT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGATTTTGGAACTTCCTTCTGTTCCTCTCTAAAAACTGTAGATAT  647

seq1  AAAGATCTTAACATGTTTACTATACTAAGTTTTAAAAATAATAAATATAT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTTAACATGTTTACTATACTAAGTTTTAAAAATAATAAATATAT  697

seq1  ACCTATATATGAATATTCATAAAATATATAATATTATTACTCATTTTACA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATATATGAATATTCATAAAATATATAATATTATTACTCATTTTACA  747

seq1  TCTATGAATATTCAAAAACTTTGGGAGTCCTACAATTCTAAAACTACCTG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAATATTCAAAAACTTTGGGAGTCCTACAATTCTAAAACTACCTG  797

seq1  AATAAGGTACATTTAATTTATCAAGCTTTTCAGCTTTTATTAAGCTTATA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGTACATTTAATTTATCAAGCTTTTCAGCTTTTATTAAGCTTATA  847

seq1  ACAAATTTTAAAAGCCTGTTTTCTAAGCAAATGTTTAGGATATGAGGCAA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTTAAAAGCCTGTTTTCTAAGCAAATGTTTAGGATATGAGGCAA  897

seq1  CATCCCAATATACATATCAATAGCTTCTGTAATGTTAAAAGAAATCTATA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAATATACATATCAATAGCTTCTGTAATGTTAAAAGAAATCTATA  947

seq1  TTTAATACATCCTAAGTGTGTTTATATATAAGATGTATATTTCTTCTATG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACATCCTAAGTGTGTTTATATATAAGATGTATATTTCTTCTATG  997

seq1  ATATAGCTACTAAAAATCTAATATACTTAGTGTTATAATAAATAATTATA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTACTAAAAATCTAATATACTTAGTGTTATAATAAATAATTATA  1047

seq1  GCACACATAAAATTATTAAACATTTATATAACTGACTTAAACTTTATTTT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATAAAATTATTAAACATTTATATAACTGACTTAAACTTTATTTT  1097

seq1  ATAGAATTC  1090
      |||||||||
seq2  ATAGAATTC  1106