BAC Information

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BAC

Clone NameB6Ng01-197D14
Chromosome5 (Build37)
Map Location 138,559,283 - 138,560,156
singlet/doubletsinglet
Overlap geneZscan21
Upstream geneTrim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1
Downstream geneZfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197D14.bB6Ng01-197D14.g
ACCGA019147GA019148
length8711,201
definitionB6Ng01-197D14.b B6Ng01-197D14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
cataaaggagggaaaaattgggaagtgaccaaaagcctgctgctagactt
cgagagttaggtttttatttttttactctgtgtgtgtgtgtgtgtgtgtg
agtcaaaggatagttggcatagttgactgcttcccttccattacatggac
accagtctcaaaacaggcagcaggtcggttgcatttgttacccactgagc
catcttgtcagttgagttaaacctttagataggggctggagagatggctc
agtggttaagagcactactggctgctcttccagaggtcctgagttcaaat
cccagcaaccacttggtggctcatggccatttgtaatgtgatcttatgcc
ctcttctggtgtgtctgaaaacagcaacagtgtactcttagacataaaat
aatacatgaatctttaaaaacaaaacaaaacaacctttagatagctttgg
ttttgcttttttgttatttttcaaaacagggtttctttgtgttgccctgt
ctgtcctggaactctgttgactatgctggcttctaactcagagatcctcc
tgcctctaccttccatgtgctgggattaaggtgtacataccacaccctgc
tttaggtagcctttttaaagttttttttttttttctatgaaagtgttaaa
ttaggcctgtttttctacccacatactttttgattttatgactatttaaa
ggaattttcagaaaccaagacctggagggcatcttcacatggcaagctca
gcattaccaaatgtgaaacattggctttctttgtgtgcagggagcaagat
gccaagatactttagtaccagattttttcttttcttctttttggtttttt
ggttttttttttgggttttgt
gaattcacgccaagtcactgcccatctcggggcgtagtaatgaggtgatg
ggcgagcaacaaatcaggtgctgacatgccacgctgagggcaatataagc
agcaccattttccaggttctgggtcttccctcctgaagaagcaataaagc
ttttgctgtagaagaatccggttgtccgagtgtgttcttgccggcgagaa
caatagctcggggcaagtggcaccgagtacccgggaacttcataccatca
ccggcacaagggagaccctccgttcacagggcgggttcaaaactgcatga
cacgtaaggttctgtaaggcatgttcggtcttgaaatttctccagagtta
gaggcccttttgtatgttttcacgggactcattctttttcttttgattgc
gtactgctttcaccgctggaactgctgactggatctcagtcgcggtcagg
cacggttagataaaagggcagcgggcagtatgggaactttccactctgtg
gtgaccaccttacagtcggtcctgaggcagcgtggcctgaagatcgccac
taagactctagagggttttgtaaaagagatagctcacatagcgccatggt
atgcatgctcagggtccttaactatcgcctcttgggagaaactgaaagga
gatctagttagggaacagcagtacagcaaacttaaagcagggaccatgcc
gttgtggaagctggtaagatcgtgcttaaaggacgaacaatgccaacaaa
tggttaaggcggggcaaaggatactggaggaaatccaagacagtctatca
gaggcagatcagggaaagagattaggagttcgaaggaaacatggtgcgcc
taagaagaaaacaagctctttcacggaccttgagcccgaggaagagagat
tcaagggaaagtatgccctgggagagcttagaaaaagggatggaaaggga
gagacgagagagatagagctggggaggcacctaagggaagagcttctatc
cggcattagatgagttcaaggcttctagggtttagtagctcagaatcgga
tgaggagctagcccccgcccctccccaggaaacgactcgaggagagcggc
tcgctatgagggaaaattaccagctgatgaagatgacctatcgtcagata
gctaagagcttaaggagtccgcttcactaagcgatctctcggggccaatt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138559283_138560156
seq2: B6Ng01-197D14.b_55_925

seq1  CATAAAGGAGGGAAAAATTGGGAAGTGACCAAAAGCCTGCTGCTAGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGGAGGGAAAAATTGGGAAGTGACCAAAAGCCTGCTGCTAGACTT  50

seq1  CGAGAGTTAGGTTTTTATTTTTTTACTCTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGTTAGGTTTTTATTTTTTTACTCTGTGTGTGTGTGTGTGTGTGTG  100

seq1  AGTCAAAGGATAGTTGGCATAGTTGACTGCTTCCCTTCCATTACATGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGGATAGTTGGCATAGTTGACTGCTTCCCTTCCATTACATGGAC  150

seq1  ACCAGTCTCAAAACAGGCAGCAGGTCGGTTGCATTTGTTACCCACTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTCAAAACAGGCAGCAGGTCGGTTGCATTTGTTACCCACTGAGC  200

seq1  CATCTTGTCAGTTGAGTTAAACCTTTAGATAGGGGCTGGAGAGATGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTCAGTTGAGTTAAACCTTTAGATAGGGGCTGGAGAGATGGCTC  250

seq1  AGTGGTTAAGAGCACTACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAAGAGCACTACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAAAT  300

seq1  CCCAGCAACCACTTGGTGGCTCATGGCCATTTGTAATGTGATCTTATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACCACTTGGTGGCTCATGGCCATTTGTAATGTGATCTTATGCC  350

seq1  CTCTTCTGGTGTGTCTGAAAACAGCAACAGTGTACTCTTAGACATAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGGTGTGTCTGAAAACAGCAACAGTGTACTCTTAGACATAAAAT  400

seq1  AATACATGAATCTTTAAAAACAAAACAAAACAACCTTTAGATAGCTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGAATCTTTAAAAACAAAACAAAACAACCTTTAGATAGCTTTGG  450

seq1  TTTTGCTTTTTTGTTATTTTTCAAAACAGGGTTTCTTTGTGTTGCCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTTTTGTTATTTTTCAAAACAGGGTTTCTTTGTGTTGCCCTGT  500

seq1  CTGTCCTGGAACTCTGTTGACTATGCTGGCTTCTAACTCAGAGATCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACTCTGTTGACTATGCTGGCTTCTAACTCAGAGATCCTCC  550

seq1  TGCCTCTACCTTCCATGTGCTGGGATTAAGGTGTACATACCACACCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTACCTTCCATGTGCTGGGATTAAGGTGTACATACCACACCCTGC  600

seq1  TTTAGGTAGCCTTTTTAAAGTTTTTTTTTTTTTTCTATGAAAGTGTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTAGCCTTTTTAAAGTTTTTTTTTTTTTTCTATGAAAGTGTTAAA  650

seq1  TTAGGCCTGTTTTTCTACCCACATACTTTTTGATTTTATGACTATTT-AA  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTAGGCCTGTTTTTCTACCCACATACTTTTTGATTTTATGACTATTTAAA  700

seq1  GGAATTTTCAGAAACCAAGACCTGGAGGGCATCTTCACATGGCAAGCTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTCAGAAACCAAGACCTGGAGGGCATCTTCACATGGCAAGCTCA  750

seq1  GCATTACCAAATGTGAAACATTGGCTTTCTTTGTGTGCAGGGAGCAAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACCAAATGTGAAACATTGGCTTTCTTTGTGTGCAGGGAGCAAGAT  800

seq1  GCCAAGATACTTTAGTACCAGATTTTTTCTTTTCTTCTTTTTGGTTTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGATACTTTAGTACCAGATTTTTTCTTTTCTTCTTTTTGGTTTTTT  850

seq1  GGTTTTTTTTTTGGTTTTGTTTTGT  874
      ||||||||||||||    |||||||
seq2  GGTTTTTTTTTTGG----GTTTTGT  871