BAC Information

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BAC

Clone NameB6Ng01-197P08
Chromosome5 (Build37)
Map Location 81,010,925 - 81,212,877
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197P08.bB6Ng01-197P08.g
ACCGA019682GA019683
length9191,136
definitionB6Ng01-197P08.b B6Ng01-197P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,211,964 - 81,212,877)(81,010,925 - 81,012,059)
sequence
gaattcctttatgtaaaaggacccaatctagctggttgagaaaagtcaac
ttttgcatttcaaatgccaaaagtctttatagctgccagcatttaagtcc
caattaaaaacaaaatgaaagcaagacaataagttgggtctcatccaagt
cagtatacttcacagataatagctctgaaacaaggaggtgattgttaaac
ttgggagtgggaagatgtccttcaggcattcaggtttatacaggctgcct
agttttctgcgttcatacatattgtatcttttgtagccataaacctagat
ccaagcaaactggattcttatctcaaagctgtaatttactgactgcttgt
gtgagcttggacaaagcctgatatttccaggtcgccatttttttatgacc
aaaactgggcatccatatcattatagtgtgttatgtatatattataagtc
agcagcaaagcatatgctcacatacatatttattagaagcatttcttgag
ataagttagggatgggtgtgtagggagctgtaacattcatggaacatcta
attatacttagctaaccttcaatactgtcacagtggtatgttttgttttt
cacctgttattagcaaaagtagaagttggaatgggaatatattatgaaca
tctccaaactaagtggcatagctaaaagctatatagtgagtagtgtatgt
aatgatatagtaaaatcctcaatcgcttaatggaataaaactaatctgaa
ttttcaagaattacaattcttggggaaagatcatatatatatgaaatctg
atttttaatatttttatgcaataaagatattgcactctatttttataaaa
tgatcctgtaattcgctttatgtaattttagaaataaggtattacatcct
ccgtgaaaaataatcaata

gaattctttataaaactgaaacagaagctctataatgttttaaaattctt
atgaagcccttgtatgtgcataacattgtagacgtgttgcataaatgagg
agaacttagtattagttatagcattacaatataaagaaagatatgttcgg
aatacagcttttaaggcttttcttatttctctgtccttagttttttattt
attcacaatcaaacatgtttaaacacagtgcattctcacacctggctgac
attatccctttcccacctagaaccttcttaccttttctcacttttttttt
ctctatctcttctttgtttctttctatcatcagtgagaatcatcatgtta
aaactgtagtcaagccagtactctcctactctgtcttctcccgtgacttt
cgataacatggaaataagtgcattctatgatcacaatactcttcagagtt
ctcaccagaactcactggttctggaagcattagttaaggctttaaaacat
aagcaacatttaaagataacagtaaaaacgaaagatccaaaccatgtatc
cagtaggtggcagtcaactttggagtctgtttccacactattcaaacccc
gagtgacaaatgtgggctcctccaagatccatttccttctgcccacttat
aatttacctcatatactcagcttgaaatgtggatgcaagccatgtggaaa
tgactgtagctatgtacctaatttgtagacaacatatgtaaataacggtg
cttgggaaaatgaaggagaaatttcttaccagattcagacatagttctcc
tgattctcgttttttcatttcactctccttccaccttgacaagatgcaag
aaatgaaagcagatgtttgagcagacatctcaaatgtctgtgttatgatg
gttgagccgatgtaggtgggaatgcataccgtaatggaacattaacaggg
aactgatcctcaacacttactttggatatctacctctgggctagttttgt
ttaggaactgttgttgcttgttgttatttatagtacctttgaggagtcat
tgcaattgcttaacctaacttcttaactggaaagtatccagtaagacatg
tttgtgtttaagttaaatgttatttagaattaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81211964_81212877
seq2: B6Ng01-197P08.b_42_960 (reverse)

seq1  TATAGATTATTTTTCAGGGAGGATGTAATACCTTTATTTC--AAATTACA  48
      ||| |||||||||||| ||||||||||||||| |||||||  ||||||||
seq2  TATTGATTATTTTTCACGGAGGATGTAATACC-TTATTTCTAAAATTACA  49

seq1  TTAAGCCAAATACA-GATCATTTTAT-AAAATAGAGTGCAATATCTTTAT  96
      | |||| || |||| ||||||||||| |||||||||||||||||||||||
seq2  TAAAGCGAATTACAGGATCATTTTATAAAAATAGAGTGCAATATCTTTAT  99

seq1  TGCATAAAACTATT-AAAATCAGATTTCATATATATATGATCTTT-CCCA  144
      ||||||||| |||| |||||||||||||||||||||||||||||| ||||
seq2  TGCATAAAAATATTAAAAATCAGATTTCATATATATATGATCTTTCCCCA  149

seq1  AGAATTGTAATTCTTGAAAATTCAGATTAGTTTTATTCCATTAAGCGATT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGTAATTCTTGAAAATTCAGATTAGTTTTATTCCATTAAGCGATT  199

seq1  GAGGATTTTACTATATCATTACATACACTACTCACTATATAGCTTTTAGC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTTACTATATCATTACATACACTACTCACTATATAGCTTTTAGC  249

seq1  TATGCCACTTAGTTTGGAGATGTTCATAATATATTCCCATTCCAACTTCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACTTAGTTTGGAGATGTTCATAATATATTCCCATTCCAACTTCT  299

seq1  ACTTTTGCTAATAACAGGTGAAAAACAAAACATACCACTGTGACAGTATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGCTAATAACAGGTGAAAAACAAAACATACCACTGTGACAGTATT  349

seq1  GAAGGTTAGCTAAGTATAATTAGATGTTCCATGAATGTTACAGCTCCCTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTAGCTAAGTATAATTAGATGTTCCATGAATGTTACAGCTCCCTA  399

seq1  CACACCCATCCCTAACTTATCTCAAGAAATGCTTCTAATAAATATGTATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCATCCCTAACTTATCTCAAGAAATGCTTCTAATAAATATGTATG  449

seq1  TGAGCATATGCTTTGCTGCTGACTTATAATATATACATAACACACTATAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATATGCTTTGCTGCTGACTTATAATATATACATAACACACTATAA  499

seq1  TGATATGGATGCCCAGTTTTGGTCATAAAAAAATGGCGACCTGGAAATAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGGATGCCCAGTTTTGGTCATAAAAAAATGGCGACCTGGAAATAT  549

seq1  CAGGCTTTGTCCAAGCTCACACAAGCAGTCAGTAAATTACAGCTTTGAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTGTCCAAGCTCACACAAGCAGTCAGTAAATTACAGCTTTGAGA  599

seq1  TAAGAATCCAGTTTGCTTGGATCTAGGTTTATGGCTACAAAAGATACAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATCCAGTTTGCTTGGATCTAGGTTTATGGCTACAAAAGATACAAT  649

seq1  ATGTATGAACGCAGAAAACTAGGCAGCCTGTATAAACCTGAATGCCTGAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGAACGCAGAAAACTAGGCAGCCTGTATAAACCTGAATGCCTGAA  699

seq1  GGACATCTTCCCACTCCCAAGTTTAACAATCACCTCCTTGTTTCAGAGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTTCCCACTCCCAAGTTTAACAATCACCTCCTTGTTTCAGAGCT  749

seq1  ATTATCTGTGAAGTATACTGACTTGGATGAGACCCAACTTATTGTCTTGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGTGAAGTATACTGACTTGGATGAGACCCAACTTATTGTCTTGC  799

seq1  TTTCATTTTGTTTTTAATTGGGACTTAAATGCTGGCAGCTATAAAGACTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTGTTTTTAATTGGGACTTAAATGCTGGCAGCTATAAAGACTT  849

seq1  TTGGCATTTGAAATGCAAAAGTTGACTTTTCTCAACCAGCTAGATTGGGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATTTGAAATGCAAAAGTTGACTTTTCTCAACCAGCTAGATTGGGT  899

seq1  CCTTTTACATAAAGGAATTC  914
      ||||||||||||||||||||
seq2  CCTTTTACATAAAGGAATTC  919


seq1: chr5_81010925_81012059
seq2: B6Ng01-197P08.g_66_1201

seq1  GAATTCTTTATAAAACTGAAACAGAAGCTCTATAATGTTTTAAAATTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAAAACTGAAACAGAAGCTCTATAATGTTTTAAAATTCTT  50

seq1  ATGAAGCCCTTGTATGTGCATAACATTGTAGACGTGTTGCATAAATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCCTTGTATGTGCATAACATTGTAGACGTGTTGCATAAATGAGG  100

seq1  AGAACTTAGTATTAGTTATAGCATTACAATATAAAGAAAGATATGTTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTAGTATTAGTTATAGCATTACAATATAAAGAAAGATATGTTCGG  150

seq1  AATACAGCTTTTAAGGCTTTTCTTATTTCTCTGTCCTTAGTTTTTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCTTTTAAGGCTTTTCTTATTTCTCTGTCCTTAGTTTTTTATTT  200

seq1  ATTCACAATCAAACATGTTTAAACACAGTGCATTCTCACACCTGGCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAATCAAACATGTTTAAACACAGTGCATTCTCACACCTGGCTGAC  250

seq1  ATTATCCCTTTCCCACCTAGAACCTTCTTACCTTTTCTCACTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCCTTTCCCACCTAGAACCTTCTTACCTTTTCTCACTTTTTTTTT  300

seq1  CTCTATCTCTTCTTTGTTTCTTTCTATCATCAGTGAGAATCATCATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTCTTCTTTGTTTCTTTCTATCATCAGTGAGAATCATCATGTTA  350

seq1  AAACTGTAGTCAAGCCAGTACTCTCCTACTCTGTCTTCTCCCGTGACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTAGTCAAGCCAGTACTCTCCTACTCTGTCTTCTCCCGTGACTTT  400

seq1  CGATAACATGGAAATAAGTGCATTCTATGATCACAATACTCTTCAGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAACATGGAAATAAGTGCATTCTATGATCACAATACTCTTCAGAGTT  450

seq1  CTCACCAGAACTCACTGGTTCTGGAAGCATTAGTTAAGGCTTTAAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGAACTCACTGGTTCTGGAAGCATTAGTTAAGGCTTTAAAACAT  500

seq1  AAGCAACATTTAAAGATAACAGTAAAAACGAAAGATCCAAACCATGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACATTTAAAGATAACAGTAAAAACGAAAGATCCAAACCATGTATC  550

seq1  CAGTAGGTGGCAGTCAACTTTGGAGTCTGTTTCCACACTATTCAAACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGTGGCAGTCAACTTTGGAGTCTGTTTCCACACTATTCAAACCCC  600

seq1  GAGTGACAAATGTGGGCTCCTCCAAGATCCATTTCCTTCTGCCCACTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACAAATGTGGGCTCCTCCAAGATCCATTTCCTTCTGCCCACTTAT  650

seq1  AATTTACCTCATATACTCAGCTTGAAATGTGGATGCAAGCCATGTGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCTCATATACTCAGCTTGAAATGTGGATGCAAGCCATGTGGAAA  700

seq1  TGACTGTAGCTATGTACCTAATTTGTAGACAACATATGTAAATAACGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTAGCTATGTACCTAATTTGTAGACAACATATGTAAATAACGGTG  750

seq1  CTTGGGAAAATGAAGGAGAAATTTCTTACCAGATTCAGACATAGTTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAAATGAAGGAGAAATTTCTTACCAGATTCAGACATAGTTCTCC  800

seq1  TGATTCTCGTTTTTTCATTTCACTCTCCTTCCACCTTGACAAGATGCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTCGTTTTTTCATTTCACTCTCCTTCCACCTTGACAAGATGCAAG  850

seq1  -AATGAAAGCAGATGTTTGAGCAGACATCTCAAATGTCTGTG-TATGATG  898
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAATGAAAGCAGATGTTTGAGCAGACATCTCAAATGTCTGTGTTATGATG  900

seq1  GTTGAGCCGATGTAGGTGGGAATGCATACCGTAATGGGAACATTAACAGG  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTGAGCCGATGTAGGTGGGAATGCATACCGTAAT-GGAACATTAACAGG  949

seq1  GAACTGATCCTCCACACTTACTTTGGATATCCTACCTCTGGCCTAGTTTT  998
      |||||||||||| ||||||||||||||||| |||||||||| ||||||||
seq2  GAACTGATCCTCAACACTTACTTTGGATAT-CTACCTCTGGGCTAGTTTT  998

seq1  GTTTAAGGAACTGTTGTTGC-TGTTGTTATTTATAGTA-CTTTGAGGAGG  1046
      |||| ||||||||||||||| ||||||||||||||||| ||||||||| |
seq2  GTTT-AGGAACTGTTGTTGCTTGTTGTTATTTATAGTACCTTTGAGGA-G  1046

seq1  TCATTGCAATTGGCTAACCTAACT--CTAACTGAAAAGTATTCCAGT-AG  1093
      ||||||||||||  ||||||||||   |||||| |||||| |||||| ||
seq2  TCATTGCAATTGCTTAACCTAACTTCTTAACTGGAAAGTA-TCCAGTAAG  1095

seq1  ACATGTTGTGT-TTTAAGTTAAATGTAAATTAAGAATTAATTC  1135
      ||||||| ||| ||||||||||||||  ||| |||||||||||
seq2  ACATGTT-TGTGTTTAAGTTAAATGT-TATTTAGAATTAATTC  1136


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