BAC Information

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BAC

Clone NameB6Ng01-198C03
Chromosome5 (Build37)
Map Location 72,566,719 - 72,567,883
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8
Downstream geneAtp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198C03.bB6Ng01-198C03.g
ACCGA019810GA019811
length1,2101,161
definitionB6Ng01-198C03.b B6Ng01-198C03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttacttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgaagtttta
tgaggtcccatttattgattcttgatcttacagcacaagccattgctgtt
ctattcaggaattttccccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
aatcttctacatgataacagccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaggt
gaccataggtatgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtacagctttaggtcagtgtattggctagttttgtgtcaacttg
acacagctggagttatcacagagaaaggagcttcagttgaggaaatgcct
ccatgagatccaactgtaaggcattttctcaattagtgatcaagggggca
aggccccttgtgggtgggaccatctctgggctggttgtcttgggttctat
aagaaagcaggctatgcaagccagtaaagaacatccctccatggcctctg
catcagctcctgctttctgacctgcttgagttccagtcctgcatcctttg
gtgatcaacagcagtatggaaatgtaagccgaataaaccctttcctcccc
aacttgcttcttggtcatgatgtttgtgcaaggaatagaaaccctgacta
agacaaattgggtaccagcagagtggggtattcctgtgacaatcttgaac
caatgtttttgggagaactgtggaaggaactttgggaactttggcttgaa
gatccatccattgtaaaagcttctgtccgaatgtcctgattagagccttg
gagaataggtcgagaaacacacgaagattggagctctcgggttgtggaaa
tactttcacg
gaattcttaccaaaaaatctgatcaactcagaccagtgagatctcagctg
tggctgccgccgccgccgccgcagcagcagcagcagcagcagcagcagac
cttgaagacattaacacaatggtggttttctgatccctgggatttgctcc
ctattgtttacctagaatcttctctccatggtctgacatcattctctgtg
cacacacatcagcctaatggagtcagacaatccctggagagttttaatcc
ctgtctcatctgggtgtctgtcacctttgactttctagtgttgtctgtat
tttacttgtactgtgacatgtatattctgcttgcccttgttttgagatat
ccttgcaaagcggagactgtgccacattcattttagtaataagatggtgt
ctggcaggaagtggtctcccagtaagtgcttgctgagtccggaaatagaa
gaattgatttaattaaaaaagaaagaaagaaactctgaggaatttaagca
gtgattcacaagctgcactgggaattagaatcaaccaaggatttgcaaaa
tccttatgattatttcttctctagaccaatgaaatcggttcctgtggatg
aacccagcccagcagcagtttgtttgtttgtttgtttccattctccagct
gatttttagtgagtggttgtaattaagaacacggccttaaaagatgcctt
ggttatctcattgatattcctccaggattcacgaaatatttatttaagtt
gaattcacttgaataaaaagctcaggaatccaagtgaattcacagctcat
ttaaaaatacactgaagcactggccaacttaaaaatgagttatagtagcc
aggaagagggccagggtcagtgggtaaaggtgacggccgactggcaatct
ggagtttaatcctcagaaccaatactgtggaagaagagaactgacacctg
caagttgtcctctgatctccacattcctgctaggtgcacttgcgcgcgcg
cgcgcacacacacacactataaattactgaccaagtaaacttctttctga
atatctcatttaatgaatcatggatgaaataaaacataatgttggcaaaa
atagctggaagtagcaaaaaaaaattttcactagatagactattaggaac
aacagcctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72566719_72567883
seq2: B6Ng01-198C03.g_67_1227

seq1  GAATTCTTACCAAAAAATCTGATCAACTCAGACCAGTGAGATCTCAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACCAAAAAATCTGATCAACTCAGACCAGTGAGATCTCAGCTG  50

seq1  TGGCTGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGAC  100

seq1  CTTGAAGACATTAACACAATGGTGGTTTTCTGATCCCTGGGATTTGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGACATTAACACAATGGTGGTTTTCTGATCCCTGGGATTTGCTCC  150

seq1  CTATTGTTTACCTAGAATCTTCTCTCCATGGTCTGACATCATTCTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTTACCTAGAATCTTCTCTCCATGGTCTGACATCATTCTCTGTG  200

seq1  CACACACATCAGCCTAATGGAGTCAGACAATCCCTGGAGAGTTTTAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATCAGCCTAATGGAGTCAGACAATCCCTGGAGAGTTTTAATCC  250

seq1  CTGTCTCATCTGGGTGTCTGTCACCTTTGACTTTCTAGTGTTGTCTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCATCTGGGTGTCTGTCACCTTTGACTTTCTAGTGTTGTCTGTAT  300

seq1  TTTACTTGTACTGTGACATGTATATTCTGCTTGCCCTTGTTTTGAGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGTACTGTGACATGTATATTCTGCTTGCCCTTGTTTTGAGATAT  350

seq1  CCTTGCAAAGCGGAGACTGTGCCACATTCATTTTAGTAATAAGATGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAAAGCGGAGACTGTGCCACATTCATTTTAGTAATAAGATGGTGT  400

seq1  CTGGCAGGAAGTGGTCTCCCAGTAAGTGCTTGCTGAGTCCGGAAATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGAAGTGGTCTCCCAGTAAGTGCTTGCTGAGTCCGGAAATAGAA  450

seq1  GAATTGATTTAATTAAAAAAGAAAGAAAGAAACTCTGAGGAATTTAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATTTAATTAAAAAAGAAAGAAAGAAACTCTGAGGAATTTAAGCA  500

seq1  GTGATTCACAAGCTGCACTGGGAATTAGAATCAACCAAGGATTTGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCACAAGCTGCACTGGGAATTAGAATCAACCAAGGATTTGCAAAA  550

seq1  TCCTTATGATTATTTCTTCTCTAGACCAATGAAATCGGTTCCTGTGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGATTATTTCTTCTCTAGACCAATGAAATCGGTTCCTGTGGATG  600

seq1  AACCCAGCCCAGCAGCAGTTTGTTTGTTTGTTTGTTTCCATTCTCCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCCCAGCAGCAGTTTGTTTGTTTGTTTGTTTCCATTCTCCAGCT  650

seq1  GATTTTTAGTGAGTGGTTGTAATTAAGAACACGGCCTTAAAAGATGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAGTGAGTGGTTGTAATTAAGAACACGGCCTTAAAAGATGCCTT  700

seq1  GGTTATCTCATTGATATTCCTCCAGGATTCACGAAATATTTATTTAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTCATTGATATTCCTCCAGGATTCACGAAATATTTATTTAAGTT  750

seq1  GAATTCACTTGAATAAAAAGCTCAGGAATCCAAGTGAATTCACAGCTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGAATAAAAAGCTCAGGAATCCAAGTGAATTCACAGCTCAT  800

seq1  TTAAAAATACACTGAAGCACTGGCCAACTTAAAAATGAGTTATAGTAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATACACTGAAGCACTGGCCAACTTAAAAATGAGTTATAGTAGCC  850

seq1  AGGAAGAGGGCCAGGGTCAGTGGGTAAAGGTGACGGCCGACTGGCAATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGGCCAGGGTCAGTGGGTAAAGGTGACGGCCGACTGGCAATCT  900

seq1  GGAGTTTAATCCTCAGAACCAATACTGTGGAAGAAGAGAACTGACACCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTAATCCTCAGAACCAATACTGTGGAAGAAGAGAACTGACACCTG  950

seq1  CAAGTTGTCCTCTGATCTCCACATTCCTGCTAGGTGCACTTGCGCGCGCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGTCCTCTGATCTCCACATTCCTGCTAGGTGCACTTGCGCGCGCG  1000

seq1  CGCGCACACACACACACTATAAATTACTGACCAAGTAAACTTCTTTCTG-  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CGCGCACACACACACACTATAAATTACTGACCAAGTAAACTTCTTTCTGA  1050

seq1  ATATCTCATTTAATGAATCAT-GATGAAATAAAAACATAAATGTGGGC-A  1097
      ||||||||||||||||||||| |||||||| ||||||| ||||| ||| |
seq2  ATATCTCATTTAATGAATCATGGATGAAAT-AAAACAT-AATGTTGGCAA  1098

seq1  AAATAGTTGAAAGTAGCAAAAAAAAAAATTTTCACTAGATAAGACTAAAT  1147
      |||||| || |||||||  ||||||||||||||||||||| |||||  ||
seq2  AAATAGCTGGAAGTAGC--AAAAAAAAATTTTCACTAGAT-AGACT--AT  1143

seq1  AAAGGACAACAGCCTGTT  1165
       | | |||||||||||||
seq2  TAGGAACAACAGCCTGTT  1161