BAC Information

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BAC

Clone NameB6Ng01-198H19
Chromosome5 (Build37)
Map Location 123,689,870 - 123,829,689
singlet/doubletdoublet
Overlap genePsmd9, Wdr66, LOC100042824, Bcl7a
Upstream geneHvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd
Downstream geneMlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198H19.bB6Ng01-198H19.g
ACCGA020070GA020071
length1,1211,140
definitionB6Ng01-198H19.b B6Ng01-198H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,689,870 - 123,690,987)(123,828,557 - 123,829,689)
sequence
gaattcctttattcctttaacacatgctggccagagcttggtgtgcatag
gggcagcccacggactcagggagagacctatggtgggaccatctgggaca
cagtgtagaaagtgatccatgccccaaagaagaaaagaggtgttcttctt
ggagccattttcctggacacggaaagaaaaaaaaatgacaagagcttaaa
gcgatgtcagtgttctttgatagatcctagagcggcattactgtgatggg
ctgctcctgccatgtgtgacccaccaaaggacacagaggagtcacagagc
tgcacatttagcaccgcagccaatttcacagtatttttattggtgctgaa
aagaagccaggcaggacttgttgagcaccagtaattttgtctgcacagat
ctgcctgttctgtgtctttgatgtgaagacagctgtatgctgtgtgctct
ctcactcggtctgttcccagggttcactcagggccgggtcacagatgaag
ccttcattacgttttatggctgagcaatatccattatgtgataggcatgt
tcttgttggtcagttaatggatgtctggatctcttctgctttggggctat
tatacgtaatgcggcagtgaatattcatgtagaagtttgtatgtggctgt
gcatggatattgaataccgtggctgctgtgggtggcaccactgctctccg
tgtgtgaccctcgaggacaagccacacatggctcctgggaagcacaaatg
gattcttttctttctttttttctttagtattttgaaacagggtttctctg
tgtagccctggctgtcctggaactccatctgtagaccagggctggcctca
gactcacagacatccacctgccctctgcctcccccattaaagacatgtgt
caccagacagaactggattctgaattcggatcctacaaatcatcccaaga
ctggggggattaaagggattggcttcagttgttagagcactgactgctct
tccgaaggtcctgagttcaatccagccaaccacatgggggcttcacacaa
tcttttactagtttagggggatccaggttctctcttctggcctccatggc
aactggacatacagtcacaga
gaattcacttggctgaggtttgaccccaagccaggctgcaaaacagacca
caacagggcaagaagatgacatttaaaaaaagaaaccctcttaacaccag
agatcttcacgtggccgcaaagctcggcctcaggggtcgcaggaagcagg
aagttcttggttttgtttttttcttgagacaagatctcctacaagccagg
ctggcctccagctcttagtgtagctgaggacgactataaattcctgattc
tcctgcctcagctttctcccactgttgggttttacagacatatcccacta
ctctcagcttgaatgttactattctttcaacaacacagtgtttcaataag
aaaatgaggttttctgcaaggttcagcaaaccttgtaaagggccagaggt
tattttcagtgttggaagtcaagagtctttgctgcaatgactaagctcca
caactatacaacgagagcaggcagggacggtatgcaagtgaacgcctttg
gttatggtataataaaacttcatttacaaaaaaacaggagggtgggctgg
atttgccggctcatacctaggagacgaaaggctacgtttcaacattcaag
gcctccctgagcccttttagagcctcttcagttatgtccctggcctcagt
ttcccttgttgtacagcggagatgctgatttctgtcctaaaccgtcattc
aaggttacagagaggtcagatgagctcatcgctaagggagtcctaaggga
gagctgagcagagcctcgagaggttccttgatgcaaagcagattgttatt
tcctccaaggtctggagagagaaaggccatgacctccagccaaattgcat
ccatgggtaccaggatcccgagggggtatctcggagagacacagcaccca
aggcctggcatcactgcctctccttgcctcccggaaggccctttcagtga
gcagatggagaaaaaagcaacaggtactggaagacagggtctccagtaag
gctgctttactgagcctgctcaaggccttgcaatccctgagcccagtgct
caggctgggatgttgttatctgacctgaggtcctgtaattcatgtctctc
tcagcctagaaattctctttctttctctgactgcatccgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123689870_123690987
seq2: B6Ng01-198H19.b_43_1163

seq1  GAATTCCTTTATTCCTTTAACACATGCTGGCCAGAGCTTGGTGTGCATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTATTCCTTTAACACATGCTGGCCAGAGCTTGGTGTGCATAG  50

seq1  GGGCAGCCCACGGACTCAGGGAGAGACCTATGGTGGGACCATCTGGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCCCACGGACTCAGGGAGAGACCTATGGTGGGACCATCTGGGACA  100

seq1  CAGTGTAGAAAGTGATCCATGCCCCAAAGAAGAAAAGAGGTGTTCTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGAAAGTGATCCATGCCCCAAAGAAGAAAAGAGGTGTTCTTCTT  150

seq1  GGAGCCATTTTCCTGGACACGGAAAGAAAAAAAAATGACAAGAGCTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATTTTCCTGGACACGGAAAGAAAAAAAAATGACAAGAGCTTAAA  200

seq1  GCGATGTCAGTGTTCTTTGATAGATCCTAGAGCGGCATTACTGTGATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGTCAGTGTTCTTTGATAGATCCTAGAGCGGCATTACTGTGATGGG  250

seq1  CTGCTCCTGCCATGTGTGACCCACCAAAGGACACAGAGGAGTCACAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTGCCATGTGTGACCCACCAAAGGACACAGAGGAGTCACAGAGC  300

seq1  TGCACATTTAGCACCGCAGCCAATTTCACAGTATTTTTATTGGTGCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTTAGCACCGCAGCCAATTTCACAGTATTTTTATTGGTGCTGAA  350

seq1  AAGAAGCCAGGCAGGACTTGTTGAGCACCAGTAATTTTGTCTGCACAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCAGGCAGGACTTGTTGAGCACCAGTAATTTTGTCTGCACAGAT  400

seq1  CTGCCTGTTCTGTGTCTTTGATGTGAAGACAGCTGTATGCTGTGTGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTTCTGTGTCTTTGATGTGAAGACAGCTGTATGCTGTGTGCTCT  450

seq1  CTCACTCGGTCTGTTCCCAGGGTTCACTCAGGGCCGGGTCACAGATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCGGTCTGTTCCCAGGGTTCACTCAGGGCCGGGTCACAGATGAAG  500

seq1  CCTTCATTACGTTTTATGGCTGAGCAATATCCATTATGTGATAGGCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTACGTTTTATGGCTGAGCAATATCCATTATGTGATAGGCATGT  550

seq1  TCTTGTTGGTCAGTTAATGGATGTCTGGATCTCTTCTGCTTTGGGGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGGTCAGTTAATGGATGTCTGGATCTCTTCTGCTTTGGGGCTAT  600

seq1  TATACGTAATGCGGCAGTGAATATTCATGTAGAAGTTTGTATGTGGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGTAATGCGGCAGTGAATATTCATGTAGAAGTTTGTATGTGGCTGT  650

seq1  GCATGGATATTGAATACCGTGGCTGCTGTGGGTGGCACCACTGCTCTCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGATATTGAATACCGTGGCTGCTGTGGGTGGCACCACTGCTCTCCG  700

seq1  TGTGTGACCCTCGAGGACAAGCCACACATGGCTCCTGGGAAGCACAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACCCTCGAGGACAAGCCACACATGGCTCCTGGGAAGCACAAATG  750

seq1  GATTCTTTTCTTTCTTTTTTTCTTTAGTATTTTGAAACAGGGTTTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTTCTTTCTTTTTTTCTTTAGTATTTTGAAACAGGGTTTCTCTG  800

seq1  TGTAGCCCTGGCTGTCCTGGAACTCCATCTGTAGACCA-GGCTGGCCTCA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTAGCCCTGGCTGTCCTGGAACTCCATCTGTAGACCAGGGCTGGCCTCA  850

seq1  GACTCACAGACATCCACCTG-CCTCTGCCTCCCCCATTAAAGACATGTGT  898
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GACTCACAGACATCCACCTGCCCTCTGCCTCCCCCATTAAAGACATGTGT  900

seq1  CACCAGACAGAACTGGATTCTGAATTCGGATCCTACAAATCATCCCAAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGACAGAACTGGATTCTGAATTCGGATCCTACAAATCATCCCAAGA  950

seq1  CTGGGGG--ATAAAGGGA-TGGC-TCAGTTGTTAAGAGCACTGACTGCTC  994
      |||||||   |||||||| |||| ||||||||| ||||||||||||||||
seq2  CTGGGGGGATTAAAGGGATTGGCTTCAGTTGTT-AGAGCACTGACTGCTC  999

seq1  TTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGC-TCACAA  1043
      ||||||||||||||||||| |||||   ||||||||||| ||| |||| |
seq2  TTCCGAAGGTCCTGAGTTC-AATCCAGCCAACCACATGGGGGCTTCAC-A  1047

seq1  CCATCTTTAACTAGTTTTAGGGGATCCA-GTTCTCTCTTCTGGCCTCCAT  1092
      | |||||| ||||||||  ||||||||| |||||||||||||||||||||
seq2  CAATCTTTTACTAGTTTAGGGGGATCCAGGTTCTCTCTTCTGGCCTCCAT  1097

seq1  GGGCAACT-GACATACAAGTTCACAGA  1118
       ||||||| ||||||||   |||||||
seq2  -GGCAACTGGACATACA--GTCACAGA  1121

seq1: chr5_123828557_123829689
seq2: B6Ng01-198H19.g_64_1203 (reverse)

seq1  CCGGATGCAGTCAGAGAA--GAAGAGA--TTCTAGGGCTGAGGAGAGAAC  46
      ||||||||||||||||||   ||||||  ||||| |||||| ||||| ||
seq2  CCGGATGCAGTCAGAGAAAGAAAGAGAATTTCTA-GGCTGA-GAGAG-AC  47

seq1  ATGAA-TACAGGACTTCAGGTCAGATAAC-ACATCCCAGCCCTGAGCACT  94
      ||||| |||||||| |||||||||||||| ||||||||| ||||||||||
seq2  ATGAATTACAGGACCTCAGGTCAGATAACAACATCCCAG-CCTGAGCACT  96

seq1  GGGCTCA-GGAATGCAA-GCCCTGAGCAGGCTCAGTAAAGCAGCC-TACT  141
      ||||||| ||| ||||| ||| ||||||||||||||||||||||| ||||
seq2  GGGCTCAGGGATTGCAAGGCCTTGAGCAGGCTCAGTAAAGCAGCCTTACT  146

seq1  GGAGACCCTGTCTTCCAGTACCTGTTGC-TTTTTCTCCATCTGCTCACTG  190
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAGACCCTGTCTTCCAGTACCTGTTGCTTTTTTCTCCATCTGCTCACTG  196

seq1  AAAGGGCC-TCCGGGAGGCAAGGAGAGGCAGTGATGCCAGGCCTTGGGTG  239
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCTTCCGGGAGGCAAGGAGAGGCAGTGATGCCAGGCCTTGGGTG  246

seq1  CTGTGTCTCTCCGAGATACCCCCTCGGGATCCTGGTACCCATGGATGCAA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTCTCCGAGATACCCCCTCGGGATCCTGGTACCCATGGATGCAA  296

seq1  TTTGGCTGGAGGTCATGGCCTTTCTCTCTCCAGACCTTGGAGGAAATAAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTGGAGGTCATGGCCTTTCTCTCTCCAGACCTTGGAGGAAATAAC  346

seq1  AATCTGCTTTGCATCAAGGAACCTCTCGAGGCTCTGCTCAGCTCTCCCTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCTTTGCATCAAGGAACCTCTCGAGGCTCTGCTCAGCTCTCCCTT  396

seq1  AGGACTCCCTTAGCGATGAGCTCATCTGACCTCTCTGTAACCTTGAATGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCCCTTAGCGATGAGCTCATCTGACCTCTCTGTAACCTTGAATGA  446

seq1  CGGTTTAGGACAGAAATCAGCATCTCCGCTGTACAACAAGGGAAACTGAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTAGGACAGAAATCAGCATCTCCGCTGTACAACAAGGGAAACTGAG  496

seq1  GCCAGGGACATAACTGAAGAGGCTCTAAAAGGGCTCAGGGAGGCCTTGAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGACATAACTGAAGAGGCTCTAAAAGGGCTCAGGGAGGCCTTGAA  546

seq1  TGTTGAAACGTAGCCTTTCGTCTCCTAGGTATGAGCCGGCAAATCCAGCC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAACGTAGCCTTTCGTCTCCTAGGTATGAGCCGGCAAATCCAGCC  596

seq1  CACCCTCCTGTTTTTTTGTAAATGAAGTTTTATTATACCATAACCAAAGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCTGTTTTTTTGTAAATGAAGTTTTATTATACCATAACCAAAGG  646

seq1  CGTTCACTTGCATACCGTCCCTGCCTGCTCTCGTTGTATAGTTGTGGAGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCACTTGCATACCGTCCCTGCCTGCTCTCGTTGTATAGTTGTGGAGC  696

seq1  TTAGTCATTGCAGCAAAGACTCTTGACTTCCAACACTGAAAATAACCTCT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCATTGCAGCAAAGACTCTTGACTTCCAACACTGAAAATAACCTCT  746

seq1  GGCCCTTTACAAGGTTTGCTGAACCTTGCAGAAAACCTCATTTTCTTATT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTTACAAGGTTTGCTGAACCTTGCAGAAAACCTCATTTTCTTATT  796

seq1  GAAACACTGTGTTGTTGAAAGAATAGTAACATTCAAGCTGAGAGTAGTGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTGTGTTGTTGAAAGAATAGTAACATTCAAGCTGAGAGTAGTGG  846

seq1  GATATGTCTGTAAAACCCAACAGTGGGAGAAAGCTGAGGCAGGAGAATCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTCTGTAAAACCCAACAGTGGGAGAAAGCTGAGGCAGGAGAATCA  896

seq1  GGAATTTATAGTCGTCCTCAGCTACACTAAGAGCTGGAGGCCAGCCTGGC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTATAGTCGTCCTCAGCTACACTAAGAGCTGGAGGCCAGCCTGGC  946

seq1  TTGTAGGAGATCTTGTCTCAAGAAAAAAACAAAACCAAGAACTTCCTGCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGAGATCTTGTCTCAAGAAAAAAACAAAACCAAGAACTTCCTGCT  996

seq1  TCCTGCGACCCCTGAGGCCGAGCTTTGCGGCCACGTGAAGATCTCTGGTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCGACCCCTGAGGCCGAGCTTTGCGGCCACGTGAAGATCTCTGGTG  1046

seq1  TTAAGAGGGTTTCTTTTTTTAAATGTCATCTTCTTGCCCTGTTGTGGTCT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGGTTTCTTTTTTTAAATGTCATCTTCTTGCCCTGTTGTGGTCT  1096

seq1  GTTTTGCAGCCTGGCTTGGGGTCAAACCTCAGCCAAGTGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCAGCCTGGCTTGGGGTCAAACCTCAGCCAAGTGAATTC  1140