BAC Information

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BAC

Clone NameB6Ng01-199N15
Chromosome5 (Build37)
Map Location 6,439,048 - 6,440,156
singlet/doubletsinglet
Overlap genenone
Upstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854, LOC100041208
Downstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199N15.bB6Ng01-199N15.g
ACCGA021074GA021075
length1,1001,176
definitionB6Ng01-199N15.b B6Ng01-199N15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagagcgttggttataagaatatactcctaaaatatttgttcta
tcaaattggaaactaaacaaaataaatgaatttcttaatgtgtgtgacat
aacatagtgaaacaaaaaataacgtaaagagatttttcataagcaacaag
aacatcttaagaaatctctaaaaacaaacacagcaaattgagcctcacat
ggacatactgcaagcctctaccagacctttagggagaggagaaaccaatg
tttgtcaaataattccataaaataaaataagaaaaaaatacctctttaaa
aaaagagccagcattacactgatacctaaccctgatgccttgttttgttt
tgtttttttgttttttaaatcctgctaaaaagtgaacctttaccctccta
gcccttcaatggcctctcccaacttcagtctccactaggaatagcaccaa
gctcctaagccagactaatgtttgatttctattgttatgattaaaaagtt
cataaaaatgaataagtcttaacagagttaaaacccctgtattcctctaa
ggaaaggggacaggaagttccacagtagcgttggtggccttaagccaggg
aagccagagaagccagggttcctacttgcatgagtccataggtgctgggt
tcctggagcaaattccctgggatgtgaagttaacctttgtgtcttgatcc
tggagcctggcagtgtaggtgggctgaaaccctggaaagcagggaagagg
ccatgatagctgggtccctggtgcaggaagtttccaggaaataaaagtgt
tctttcatgctacaggaggtcatgtagattttactcaattaaattctatc
ttaaatgtagcatttatacaaggaataatgaaaagcatttttaaagctta
ttccatagtaagagaatgttatacttgccctacctaccacctaatagcaa
catttaactaatatgatccacttataaaaagattttttttttagttttat
ttctactgaccttagaagatcatgggcataaacatccatcgttttcctat
tcaattcaaatatccttctaggaatgttttatttgtactgcaagaaagcc

gaattcactctgtagaccaggctagtctccaaactcagaggtccacctgc
ctttgcctcctgagtgctgggattaaaggcatgcgccaccactgtccggc
aaaaatatttttacttttctaaaaatgatgggattagttaaaatttcaaa
gccaaaatttaaatagtagtttcattccaataacttttattttaaattaa
attataatttttactttgttttaatgttagtattcatttttaaggttata
aaaataaagtaatattttaaatctagaaattttcatttgatgatctacat
ttatattaaataagtgtgtatttgtgttgtacatctttaggaggacatca
taccattctttttacaatggatataattgcacttcattattaattattta
ataaataataaataagttagcttaataagaataaagtaaattataattaa
gaaaagtacaattaaaaggaagaaggcaaaaactttaaggagtcaattta
attcaatttgttaaaatgtagaaacaataaagtgagaatttatgctgata
agcctaaagctcataaaatttgcaattataacaaaccagacctgctagtc
tttgaatgttaatttctgacaaaaacaatgagagtgtgaaaaatgaaaca
ttagacccaaacttatactttatgcaaatcagataaaatcactccaaatt
ttatatattttattcactaaacatttttaatttctgatataaattgtgag
aataaaaacaataattattcatgttcatttaacaagtaagtatcaataag
tgcaattataagccccaacggagatgatattagctgaaatacccaagaga
gggaaatagactctgcagagactaccctcagaggataggcatagtcccca
gttgagggaaggggccactcaccccatctaaaaattttaacacagaattg
tgccagtctaaaggaatgcagggacagaaatggagcagagaccaaagaaa
ggcatacttagacacccacccttatcttgggatcatgccatctcagacaa
caaaaacctgacactatttctgatggcagactgccttgccagaacagagt
tcaaatatggcctatgacttgcagcaccctgactaatacagaatggcgaa
acactcaccatcccaacacactgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6439048_6440156
seq2: B6Ng01-199N15.b_47_1146 (reverse)

seq1  GGCTTTTCTTTTGCAGTACAAAATAAAACATTCCTAGAAGGGATATTTTG  50
      |||||   | ||||||||| ||||||||||||||||||| ||||||||  
seq2  GGCTT---TCTTGCAGTAC-AAATAAAACATTCCTAGAA-GGATATTT--  43

seq1  GATTTTGATAGAAAAACGATGGATGTTTTATTGCCCATGATCTTCTAAGG  100
      || ||  |||| ||||||||||||||||   |||||||||||||||||||
seq2  GAATTGAATAGGAAAACGATGGATGTTT--ATGCCCATGATCTTCTAAGG  91

seq1  TCAGTAAGAAATAAAACT-AAAAAAAAATCTTTTTATAAGTGGATCATAT  149
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAGT-AGAAATAAAACTAAAAAAAAAATCTTTTTATAAGTGGATCATAT  140

seq1  TAGTAAAATGTTGCTATTAGGTGGTAGGTAGGGCAAGTATAACATTCTCT  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAATGTTGCTATTAGGTGGTAGGTAGGGCAAGTATAACATTCTCT  190

seq1  TACTATGGAATAAGCTTTAAAAATGCTTTTCATTATTCCTTGTATAAATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGGAATAAGCTTTAAAAATGCTTTTCATTATTCCTTGTATAAATG  240

seq1  CTACATTTAAGATAGAATTTAATTGAGTAAAATCTACATGACCTCCTGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTAAGATAGAATTTAATTGAGTAAAATCTACATGACCTCCTGTA  290

seq1  GCATGAAAGAACACTTTTATTTCCTGGAAACTTCCTGCACCAGGGACCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAGAACACTTTTATTTCCTGGAAACTTCCTGCACCAGGGACCCA  340

seq1  GCTATCATGGCCTCTTCCCTGCTTTCCAGGGTTTCAGCCCACCTACACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCATGGCCTCTTCCCTGCTTTCCAGGGTTTCAGCCCACCTACACTG  390

seq1  CCAGGCTCCAGGATCAAGACACAAAGGTTAACTTCACATCCCAGGGAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCCAGGATCAAGACACAAAGGTTAACTTCACATCCCAGGGAATT  440

seq1  TGCTCCAGGAACCCAGCACCTATGGACTCATGCAAGTAGGAACCCTGGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGGAACCCAGCACCTATGGACTCATGCAAGTAGGAACCCTGGCT  490

seq1  TCTCTGGCTTCCCTGGCTTAAGGCCACCAACGCTACTGTGGAACTTCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCTTCCCTGGCTTAAGGCCACCAACGCTACTGTGGAACTTCCTG  540

seq1  TCCCCTTTCCTTAGAGGAATACAGGGGTTTTAACTCTGTTAAGACTTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTTCCTTAGAGGAATACAGGGGTTTTAACTCTGTTAAGACTTATT  590

seq1  CATTTTTATGAACTTTTTAATCATAACAATAGAAATCAAACATTAGTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATGAACTTTTTAATCATAACAATAGAAATCAAACATTAGTCTG  640

seq1  GCTTAGGAGCTTGGTGCTATTCCTAGTGGAGACTGAAGTTGGGAGAGGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGAGCTTGGTGCTATTCCTAGTGGAGACTGAAGTTGGGAGAGGCC  690

seq1  ATTGAAGGGCTAGGAGGGTAAAGGTTCACTTTTTAGCAGGATTTAAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGGCTAGGAGGGTAAAGGTTCACTTTTTAGCAGGATTTAAAAAA  740

seq1  CAAAAAAACAAAACAAAACAAGGCATCAGGGTTAGGTATCAGTGTAATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACAAAACAAAACAAGGCATCAGGGTTAGGTATCAGTGTAATGC  790

seq1  TGGCTCTTTTTTTAAAGAGGTATTTTTTTCTTATTTTATTTTATGGAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTTTTTTAAAGAGGTATTTTTTTCTTATTTTATTTTATGGAATT  840

seq1  ATTTGACAAACATTGGTTTCTCCTCTCCCTAAAGGTCTGGTAGAGGCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACAAACATTGGTTTCTCCTCTCCCTAAAGGTCTGGTAGAGGCTTG  890

seq1  CAGTATGTCCATGTGAGGCTCAATTTGCTGTGTTTGTTTTTAGAGATTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTCCATGTGAGGCTCAATTTGCTGTGTTTGTTTTTAGAGATTTC  940

seq1  TTAAGATGTTCTTGTTGCTTATGAAAAATCTCTTTACGTTATTTTTTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGTTCTTGTTGCTTATGAAAAATCTCTTTACGTTATTTTTTGTT  990

seq1  TCACTATGTTATGTCACACACATTAAGAAATTCATTTATTTTGTTTAGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGTTATGTCACACACATTAAGAAATTCATTTATTTTGTTTAGTT  1040

seq1  TCCAATTTGATAGAACAAATATTTTAGGAGTATATTCTTATAACCAACGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTGATAGAACAAATATTTTAGGAGTATATTCTTATAACCAACGC  1090

seq1  TCTGGAATTC  1109
      ||||||||||
seq2  TCTGGAATTC  1100