BAC Information

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BAC

Clone NameB6Ng01-200D02
Chromosome5 (Build37)
Map Location 80,837,922 - 80,972,643
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200D02.bB6Ng01-200D02.g
ACCGA021324GA021325
length1,0011,141
definitionB6Ng01-200D02.b B6Ng01-200D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,971,645 - 80,972,643)(80,837,922 - 80,839,069)
sequence
gaattcactggtttttctgttgtaatatagatatacatgcgccatgagca
atatacagtaagtatatatctattatctattcattaatactgcacataat
aactgttttgtgttttcatgaattcaaatatgcctattccatatctagtc
aatacagatttttttcttcttggaatatagtttcaaaccaaccaaccaac
caaacaaacaaacaaaaatctgatgctaggcaacttttctattcttattt
ggttattctcttaagttttgtaaatttcgtatttgctgcttctgaaagta
tttgtcattttttcttttgtccatttaatactgttccatgtacctgagaa
atataatgcatttgtcatgatctctttgttgaaacaaaacaattgcaaga
aaaagctaaagatttcatgcccatgtattaaacatctgtcttgtaggaaa
cttaaattcttattatttaggatattcacttaaaacttttcacagcattg
actttatcaggtcttagacaaaacaatgtatcccattcatcattttactt
ctaagaaactatcaacagagcatggaacatggttaaaaatacaaactgca
attagtacgaaaaaggccatgagtcagaaaagaacaatgaggggcatatg
ggaaggtttgaagggaggaaaaggaagaggaaatgtaattatactataat
tttaacttgtaaaaaggaaagtaattaaactggaaaatgaataaagcaaa
aaagccacatttaaacaaaaaaaaaaaacaacaatgaataaaggcttcgt
tttatttaaacaggtttcacgtacagaggaagtccggaatgtgacagatc
agcagtgctcctctgtgtacactcagaaaccagagactatgtcattttca
cccaaagatctgttagccagtcaagcctacagttcgagaactttaatagt
tcaagaatgacaattaccaaacagtttcatgaacacagaatacttttttt
t

gaattcactaatgaactgaactccattgtactagactcattacactgact
tccaactgactgactccctcataccctgtgctgttctcattagaattagg
catatcctatctctgactcattctgtcaaatctttctgtgatttgtcact
ttgtcttcccctcaattaggtgtaattcaaacatgactacttcttctaca
aactaattttactttaaaggtgtgtactagtggcatgtctgtactccaag
caaagggtttaaggatgtgtactacaatcagagttggctgtatttatgta
ccaaggattatatatgcacaaatatttatgaaacaacaatgaatgaaaaa
gaggtaatgaatttgaaagagaggaagcaaaactatatgacaggataagg
gtggagaaaaatatgagaaaattatataattatattagaatcccctcaaa
ataaaaacacagtttgaaatatggtatatataaaatcaatgagctaaggg
atgttgataaaaaagtaaactatttcaagtcaaataaaaataaactgtga
ttaagacatatatacacaaatgaacacaaaggagtgcattatgaatttta
acttccaaattaacgaaatatataactttaatagttattatgaaaagatt
tggagtcatttcttgaattacatatattctaaggcacacaaactatttag
ataaaatacagtgagttttgctggttgtgagtgataataacaggaaagac
ctaccatattgaggaatagattatataccttgaagcaagttacaagaaca
ctttcagagaattctgaagtcgaattctcaatgaaataaaaaagtcaaga
tcattttgctggcaaacatacatcttgggtatatataagatgcatcacaa
tgtagaggtagctcatttcccaagcattctcaatgtgatatcatatggcc
acagcttcaaataagaatttcagatacaatacctccagggcaaataattt
aaatttttattctgtctagtctagcttactttaagattgacttatacctg
gtgaattacagtgttttagatgttatgaagaggatcaaagatttttgcca
ggtcttggactaccaggagcacatgttatattcaggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80971645_80972643
seq2: B6Ng01-200D02.b_49_1049 (reverse)

seq1  AAAAAAAAGTATTCTGTGTTCATGGAACTGTTTGGTAATTGTCATTCCTG  50
      |||||||||||||||||||||||| |||||||||||||||||||||| ||
seq2  AAAAAAAAGTATTCTGTGTTCATGAAACTGTTTGGTAATTGTCATTCTTG  50

seq1  AAACTTTTAAGTTCTCGAACTGTAGGCTTGACTGGCCTACAGATCTTT-G  99
      ||   || ||||||||||||||||||||||||||||  |||||||||| |
seq2  AACTATTAAAGTTCTCGAACTGTAGGCTTGACTGGCTAACAGATCTTTGG  100

seq1  GTGAAAATGACATAGTCTCTGGTTTCTGAGTGTACACAGAGGAGCACTGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATGACATAGTCTCTGGTTTCTGAGTGTACACAGAGGAGCACTGC  150

seq1  TGATCTGTCACATTCCGGACTTCCTCTGTACGTGAAACCTGTTTAAATAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTCACATTCCGGACTTCCTCTGTACGTGAAACCTGTTTAAATAA  200

seq1  AACGAAGCCTTTATTCATTGTTG-TTTTTTTTTTTGTTTAAATGTGGCTT  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACGAAGCCTTTATTCATTGTTGTTTTTTTTTTTTGTTTAAATGTGGCTT  250

seq1  TTTTGCTTTATTCATTTTCCAGTTTAATTACTTTCCTTTTTACAAGTTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTATTCATTTTCCAGTTTAATTACTTTCCTTTTTACAAGTTAA  300

seq1  AATTATAGTATAATTACATTTCCTCTTCCTTTTCCTCCCTTCAAACCTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGTATAATTACATTTCCTCTTCCTTTTCCTCCCTTCAAACCTTC  350

seq1  CCATATGCCCCTCATTGTTCTTTTCTGACTCATGGCCTTTTTCGTACTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCCCCTCATTGTTCTTTTCTGACTCATGGCCTTTTTCGTACTAA  400

seq1  TTGCAGTTTGTATTTTTAACCATGTTCCATGCTCTGTTGATAGTTTCTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTTGTATTTTTAACCATGTTCCATGCTCTGTTGATAGTTTCTTA  450

seq1  GAAGTAAAATGATGAATGGGATACATTGTTTTGTCTAAGACCTGATAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAAATGATGAATGGGATACATTGTTTTGTCTAAGACCTGATAAAG  500

seq1  TCAATGCTGTGAAAAGTTTTAAGTGAATATCCTAAATAATAAGAATTTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTGTGAAAAGTTTTAAGTGAATATCCTAAATAATAAGAATTTAA  550

seq1  GTTTCCTACAAGACAGATGTTTAATACATGGGCATGAAATCTTTAGCTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTACAAGACAGATGTTTAATACATGGGCATGAAATCTTTAGCTTT  600

seq1  TTCTTGCAATTGTTTTGTTTCAACAAAGAGATCATGACAAATGCATTATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCAATTGTTTTGTTTCAACAAAGAGATCATGACAAATGCATTATA  650

seq1  TTTCTCAGGTACATGGAACAGTATTAAATGGACAAAAGAAAAAATGACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGGTACATGGAACAGTATTAAATGGACAAAAGAAAAAATGACAA  700

seq1  ATACTTTCAGAAGCAGCAAATACGAAATTTACAAAACTTAAGAGAATAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCAGAAGCAGCAAATACGAAATTTACAAAACTTAAGAGAATAAC  750

seq1  CAAATAAGAATAGAAAAGTTGCCTAGCATCAGATTTTTGTTTGTTTGTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGAATAGAAAAGTTGCCTAGCATCAGATTTTTGTTTGTTTGTTT  800

seq1  GGTTGGTTGGTTGGTTTGAAACTATATTCCAAGAAGAAAAAAATCTGTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTGGTTGGTTTGAAACTATATTCCAAGAAGAAAAAAATCTGTAT  850

seq1  TGACTAGATATGGAATAGGCATATTTGAATTCATGAAAACACAAAACAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGATATGGAATAGGCATATTTGAATTCATGAAAACACAAAACAGT  900

seq1  TATTATGTGCAGTATTAATGAATAGATAATAGATATATACTTACTGTATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGTGCAGTATTAATGAATAGATAATAGATATATACTTACTGTATA  950

seq1  TTGCTCATGGCGCATGTATATCTATATTACAACAGAAAAACCAGTGAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATGGCGCATGTATATCTATATTACAACAGAAAAACCAGTGAATT  1000

seq1  C  999
      |
seq2  C  1001


seq1: chr5_80837922_80839069
seq2: B6Ng01-200D02.g_64_1204

seq1  GAATTCACTAATGAACTGAACTCCATTGTACTAGACTCATTACACTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATGAACTGAACTCCATTGTACTAGACTCATTACACTGACT  50

seq1  TCCAACTGACTGACTCCCTCATACCCTGTGCTGTTCTCATTAGAATTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGACTGACTCCCTCATACCCTGTGCTGTTCTCATTAGAATTAGG  100

seq1  CATATCCTATCTCTGACTCATTCTGTCAAATCTTTCTGTGATTTGTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCTATCTCTGACTCATTCTGTCAAATCTTTCTGTGATTTGTCACT  150

seq1  TTGTCTTCCCCTCAATTAGGTGTAATTCAAACATGACTACTTCTTCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCCCCTCAATTAGGTGTAATTCAAACATGACTACTTCTTCTACA  200

seq1  AACTAATTTTACTTTAAAGGTGTGTACTAGTGGCATGTCTGTACTCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTTTACTTTAAAGGTGTGTACTAGTGGCATGTCTGTACTCCAAG  250

seq1  CAAAGGGTTTAAGGATGTGTACTACAATCAGAGTTGGCTGTATTTATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGTTTAAGGATGTGTACTACAATCAGAGTTGGCTGTATTTATGTA  300

seq1  CCAAGGATTATATATGCACAAATATTTATGAAACAACAATGAATGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATTATATATGCACAAATATTTATGAAACAACAATGAATGAAAAA  350

seq1  GAGGTAATGAATTTGAAAGAGAGGAAGCAAAACTATATGACAGGATAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATGAATTTGAAAGAGAGGAAGCAAAACTATATGACAGGATAAGG  400

seq1  GTGGAGAAAAATATGAGAAAATTATATAATTATATTAGAATCCCCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAAAATATGAGAAAATTATATAATTATATTAGAATCCCCTCAAA  450

seq1  ATAAAAACACAGTTTGAAATATGGTATATATAAAATCAATGAGCTAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACACAGTTTGAAATATGGTATATATAAAATCAATGAGCTAAGGG  500

seq1  ATGTTGATAAAAAAGTAAACTATTTCAAGTCAAATAAAAATAAACTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATAAAAAAGTAAACTATTTCAAGTCAAATAAAAATAAACTGTGA  550

seq1  TTAAGACATATATACACAAATGAACACAAAGGAGTGCATTATGAATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACATATATACACAAATGAACACAAAGGAGTGCATTATGAATTTTA  600

seq1  ACTTCCAAATTAACGAAATATATAACTTTAATAGTTATTATGAAAAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAAATTAACGAAATATATAACTTTAATAGTTATTATGAAAAGATT  650

seq1  TGGAGTCATTTCTTGAATTACATATATTCTAAGGCACACAAACTATTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCATTTCTTGAATTACATATATTCTAAGGCACACAAACTATTTAG  700

seq1  ATAAAATACAGTGAGTTTTGCTGGTTGTGAGTGATAATAACAGGAAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATACAGTGAGTTTTGCTGGTTGTGAGTGATAATAACAGGAAAGAC  750

seq1  CTACCATATTGAGGAATAGATTATATACCTTGAAGCAAGTTACAAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATATTGAGGAATAGATTATATACCTTGAAGCAAGTTACAAGAACA  800

seq1  C-TTCAGAGAATTCTGAAGTCGAATTCTCAATGAAATAAAAAAGTCAAGA  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAGAATTCTGAAGTCGAATTCTCAATGAAATAAAAAAGTCAAGA  850

seq1  TCATTTTGCTGGCAAACATACATCTT-GGTATATATAAGATGCATCACAA  898
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  TCATTTTGCTGGCAAACATACATCTTGGGTATATATAAGATGCATCAC-A  899

seq1  ATGTAGAGGTAGCTCATTT-CCAAGCATTCTCAATGTGATATCATAT-GC  946
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  ATGTAGAGGTAGCTCATTTCCCAAGCATTCTCAATGTGATATCATATGGC  949

seq1  CACAGCTTCAAAATAAGAATTTCAGATACAAATACCTCCA-GGCAAATAA  995
      ||||||||| ||||||||||||||||||| |||||||||| |||||||||
seq2  CACAGCTTC-AAATAAGAATTTCAGATAC-AATACCTCCAGGGCAAATAA  997

seq1  TTTAA--TTTTA-TCTGTCTAGTCTAGCTTACTTTAAAAGAATGACTTAT  1042
      |||||  ||||| ||||||||||||||||||||||  |||| ||||||||
seq2  TTTAAATTTTTATTCTGTCTAGTCTAGCTTACTTT--AAGATTGACTTAT  1045

seq1  ACCT-GTG-ATTACAGTGTTTTAGATGTTAATGAAGGAAGATCAAAAGAT  1090
      |||| ||| |||||||||||||||||||| ||||| || |||| ||||||
seq2  ACCTGGTGAATTACAGTGTTTTAGATGTT-ATGAA-GAGGATC-AAAGAT  1092

seq1  TTTTGCCA-GTC-TGGACTACACAGGGAGGCCACATGTATAAATTAAGAG  1138
      |||||||| ||| |||||||| || ||||  ||||||| || |||     
seq2  TTTTGCCAGGTCTTGGACTAC-CA-GGAG--CACATGT-TATATT-----  1132

seq1  AGAGGAGAGA  1148
        ||||||||
seq2  -CAGGAGAGA  1141


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