BAC Information

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BAC

Clone NameB6Ng01-202J24
Chromosome5 (Build37)
Map Location 84,522,129 - 84,665,337
singlet/doubletdoublet
Overlap geneEpha5, LOC100039489
Upstream geneSrd5a2l2, LOC100039608, LOC231368
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202J24.bB6Ng01-202J24.g
ACCGA023070GA023071
length1,140736
definitionB6Ng01-202J24.b B6Ng01-202J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,664,213 - 84,665,337)(84,522,129 - 84,522,862)
sequence
gaattcaacaatgtttaacatgtaaactgtaggaattatcaaacagcaag
aaatgggtgggccagaaaatagtggcacacaaaaatatggcaccgaatcc
gaaccatctcataaatgattacaaagttgcgtgttagaagacttcttaac
aggcacagtttacatcttgttaacataaatatgaaagttcatttatgttt
atatctatttatttggggactcattaggaggctatgatttggtggtaaga
actgcttagcactcctttgaaactaaagcccaccaacttcagattttctc
aactttcagctctgtgagagtcactactgtattcaaaggaatagtaattc
atactcatttttcacaaaataccactgtgagtgtgaatgtctgttttcag
tttgatccagagtaccacaactgcttatgatcctcttatggcttgacaaa
ttaatattcagaagaacatcttgaactttgctctgccatgggcatttttt
taacttgtatgtatgattttgattccttttaatatataaactctgggaac
agagttttataaagctatgggacaaagtcaaacaagaagaaagcaaggaa
tctcatgaatatacttaaggcaggaattcttcccacggttttacattggt
ccacacagcgtatctcttgttgggtccgtgccatgttttagatgtaggct
tacttggatgctttaatcttatttcttcttaatcttatcacttgagttgg
ttttcttgataacttgtggatgtattgttgccatagttctatgtcaaaag
ccagaccaatgtttattgatttaaggcaaaggaaggagagaagttcagat
cagctggtagcaacacattggaatttggcacacttcaggaacattttatt
tctttcctcaaatgctaaggccactattttttttttttcacggtaaagtt
agagtatctccatttcttcctattaaataatcccacttgtactaagtaat
gataatgtgtttataatcttttaagaaatggctgagagttaaacatgagc
cacttaaaatagaaccttgtagaatactggtatgcatgtagcctttccta
ggcctcgaaagaatggaattttttgaagagtgttgaagaa

gaattcaacttctcttattcttcttatatgtttctttcactgtctctctt
tgtctctgagtcggtccctgtgtatcggtctatctgtatgtacctctctc
cctccatccatatcccaccattcaccacacacacacacacacacacacac
acacacacacacacacacacacacttcaggcaatctattacgatgtgagt
ttacatttcacttgtaagaattacttaaggttctttaggctaagaagaat
acatgttagaatggaaatgtagtttgcttttatgaagggctaggagaaga
aggaaataggaattactactcagtaagttttcatttgttcaggcatgatt
cctggaagttcaagaaatgtttgcacagcattttgttagtgataatgagc
taaagtttgattgtttgtttgtttgtttgtttgtttttggagggcagatc
tcatagtacatgcttttcattatattacaaattgaatttgttgtttgttt
tttattttattttgttttgagaatatgcttttcattatattacaaattga
atttgttgtttgtttttttattttattttgttttgagaatagggttgggt
atcattttgcattttagctctactagaacttgctgtctagcatgctggcc
tcagatttatgattgcacttgattcagttttgtgaatctagaattcctga
cgacagaaaatatccttgtatttctgttggggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84664213_84665337
seq2: B6Ng01-202J24.b_47_1186 (reverse)

seq1  TTCTTCAACCACTCTTC-AAAAATCCCTGTCTCT-GAGGCCTAGGAAGGC  48
      |||||||| |||||||| |||||| ||  ||| | |||||||||||| | 
seq2  TTCTTCAA-CACTCTTCAAAAAATTCCATTCTTTCGAGGCCTAGGAAAGG  49

seq1  TTACATGCATA-CAGTATTCTACA--GGTCTATTTT-AGT-GCTCATGTT  93
       |||||||||| ||||||||||||  | |||||||| ||| |||||||||
seq2  CTACATGCATACCAGTATTCTACAAGGTTCTATTTTAAGTGGCTCATGTT  99

seq1  TAACTCTCAGCCATTTCT--AAAGA-TATAAACACATTATCATTACTTAG  140
      ||||||||||||||||||  ||||| ||||||||||||||||||||||||
seq2  TAACTCTCAGCCATTTCTTAAAAGATTATAAACACATTATCATTACTTAG  149

seq1  TACAAGTGGGATTATTTAATAGGAAG-AATGGAGATACTCTAACTTTA-C  188
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  TACAAGTGGGATTATTTAATAGGAAGAAATGGAGATACTCTAACTTTACC  199

seq1  GTG-AAAAAAAAAAATAGTGGCCTTAGCATTTGAGG-AAGAA--TAAATG  234
      ||| |||||||||||||||||||||||||||||||| |||||   |||||
seq2  GTGAAAAAAAAAAAATAGTGGCCTTAGCATTTGAGGAAAGAAATAAAATG  249

seq1  TTCCTGAAGTGTGCCAAATTCCAATGTGTTGCTACCAGCTGATCTGAACT  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAGTGTGCCAAATTCCAATGTGTTGCTACCAGCTGATCTGAACT  299

seq1  TCTCTCCTTCCTTTGCCTTAAATCAATAAACATTGGTCTGGCTTTTGACA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTTCCTTTGCCTTAAATCAATAAACATTGGTCTGGCTTTTGACA  349

seq1  TAGAACTATGGCAACAATACATCCACAAGTTATCAAGAAAACCAACTCAA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTATGGCAACAATACATCCACAAGTTATCAAGAAAACCAACTCAA  399

seq1  GTGATAAGATTAAGAAGAAATAAGATTAAAGCATCCAAGTAAGCCTACAT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAGATTAAGAAGAAATAAGATTAAAGCATCCAAGTAAGCCTACAT  449

seq1  CTAAAACATGGCACGGACCCAACAAGAGATACGCTGTGTGGACCAATGTA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACATGGCACGGACCCAACAAGAGATACGCTGTGTGGACCAATGTA  499

seq1  AAACCGTGGGAAGAATTCCTGCCTTAAGTATATTCATGAGATTCCTTGCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGTGGGAAGAATTCCTGCCTTAAGTATATTCATGAGATTCCTTGCT  549

seq1  TTCTTCTTGTTTGACTTTGTCCCATAGCTTTATAAAACTCTGTTCCCAGA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTGTTTGACTTTGTCCCATAGCTTTATAAAACTCTGTTCCCAGA  599

seq1  GTTTATATATTAAAAGGAATCAAAATCATACATACAAGTTAAAAAAATGC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATATTAAAAGGAATCAAAATCATACATACAAGTTAAAAAAATGC  649

seq1  CCATGGCAGAGCAAAGTTCAAGATGTTCTTCTGAATATTAATTTGTCAAG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCAGAGCAAAGTTCAAGATGTTCTTCTGAATATTAATTTGTCAAG  699

seq1  CCATAAGAGGATCATAAGCAGTTGTGGTACTCTGGATCAAACTGAAAACA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGAGGATCATAAGCAGTTGTGGTACTCTGGATCAAACTGAAAACA  749

seq1  GACATTCACACTCACAGTGGTATTTTGTGAAAAATGAGTATGAATTACTA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCACACTCACAGTGGTATTTTGTGAAAAATGAGTATGAATTACTA  799

seq1  TTCCTTTGAATACAGTAGTGACTCTCACAGAGCTGAAAGTTGAGAAAATC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGAATACAGTAGTGACTCTCACAGAGCTGAAAGTTGAGAAAATC  849

seq1  TGAAGTTGGTGGGCTTTAGTTTCAAAGGAGTGCTAAGCAGTTCTTACCAC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTGGTGGGCTTTAGTTTCAAAGGAGTGCTAAGCAGTTCTTACCAC  899

seq1  CAAATCATAGCCTCCTAATGAGTCCCCAAATAAATAGATATAAACATAAA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATAGCCTCCTAATGAGTCCCCAAATAAATAGATATAAACATAAA  949

seq1  TGAACTTTCATATTTATGTTAACAAGATGTAAACTGTGCCTGTTAAGAAG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTCATATTTATGTTAACAAGATGTAAACTGTGCCTGTTAAGAAG  999

seq1  TCTTCTAACACGCAACTTTGTAATCATTTATGAGATGGTTCGGATTCGGT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAACACGCAACTTTGTAATCATTTATGAGATGGTTCGGATTCGGT  1049

seq1  GCCATATTTTTGTGTGCCACTATTTTCTGGCCCACCCATTTCTTGCTGTT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTTTTGTGTGCCACTATTTTCTGGCCCACCCATTTCTTGCTGTT  1099

seq1  TGATAATTCCTACAGTTTACATGTTAAACATTGTTGAATTC  1125
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTCCTACAGTTTACATGTTAAACATTGTTGAATTC  1140


seq1: chr5_84522129_84522862
seq2: B6Ng01-202J24.g_67_802

seq1  GAATTCAACTTCTCTTATTCTTCTTATATGTTTCTTTCACTGTCTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTCTCTTATTCTTCTTATATGTTTCTTTCACTGTCTCTCTT  50

seq1  TGTCTCTGAGTCGGTCCCTGTGTATCGGTCTATCTGTATGTACCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGAGTCGGTCCCTGTGTATCGGTCTATCTGTATGTACCTCTCTC  100

seq1  CCTCCATCCATATCCCACCATTCACCACACACACACACACACACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATCCATATCCCACCATTCACCACACACACACACACACACACACAC  150

seq1  ACACACACACACACACACACACACTTCAGGCAATCTATTACGATGTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACTTCAGGCAATCTATTACGATGTGAGT  200

seq1  TTACATTTCACTTGTAAGAATTACTTAAGGTTCTTTAGGCTAAGAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCACTTGTAAGAATTACTTAAGGTTCTTTAGGCTAAGAAGAAT  250

seq1  ACATGTTAGAATGGAAATGTAGTTTGCTTTTATGAAGGGCTAGGAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTAGAATGGAAATGTAGTTTGCTTTTATGAAGGGCTAGGAGAAGA  300

seq1  AGGAAATAGGAATTACTACTCAGTAAGTTTTCATTTGTTCAGGCATGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAGGAATTACTACTCAGTAAGTTTTCATTTGTTCAGGCATGATT  350

seq1  CCTGGAAGTTCAAGAAATGTTTGCACAGCATTTTGTTAGTGATAATGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGTTCAAGAAATGTTTGCACAGCATTTTGTTAGTGATAATGAGC  400

seq1  TAAAGTTTGATTGTTTGTTTGTTTGTTTGTTTGTTTTTGGAGGGCAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTGATTGTTTGTTTGTTTGTTTGTTTGTTTTTGGAGGGCAGATC  450

seq1  TCATAGTACATGCTTTTCATTATATTACAAATTGAATTTGTTGTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTACATGCTTTTCATTATATTACAAATTGAATTTGTTGTTTGTTT  500

seq1  TTTATTTTATTTTGTTTTGAGAATATGCTTTTCATTATATTACAAATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATTTTGTTTTGAGAATATGCTTTTCATTATATTACAAATTGA  550

seq1  ATTTGTTGTTTGTTTTTTTATTTTATTTTGTTTTGAGAATAGGGTTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGTTTGTTTTTTTATTTTATTTTGTTTTGAGAATAGGGTTGGGT  600

seq1  ATCATTTTGCATTTTAGCTCTACTAGAACTTGCTGTCTAGCATGCTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTGCATTTTAGCTCTACTAGAACTTGCTGTCTAGCATGCTGGCC  650

seq1  TCAGATTTATGATTGCACTTGATTCAGTTTTGTGAATCTAGAATTCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTATGATTGCACTTGATTCAGTTTTGTGAATCTAGAATTCCTGA  700

seq1  CGACAGAAAATATCCTTGTA-TTCTG-TGGGGTGTG  734
      |||||||||||||||||||| ||||| |||||||||
seq2  CGACAGAAAATATCCTTGTATTTCTGTTGGGGTGTG  736


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