BAC Information

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BAC

Clone NameB6Ng01-202N05
Chromosome5 (Build37)
Map Location 66,793,163 - 66,941,682
singlet/doubletdoublet
Overlap geneApbb2
Upstream geneLias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7
Downstream geneUchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202N05.bB6Ng01-202N05.g
ACCGA023213GA023214
length405554
definitionB6Ng01-202N05.b B6Ng01-202N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,793,163 - 66,793,573)(66,941,123 - 66,941,682)
sequence
atgtcagaccaaggacaaagagcaaggtctgtagcttttaagccatgttg
cttcctacagtgtgtgaggggaattttgcaccagatagcaggaattgact
tgttctatattgaaccaaacacactgcatttttacctggtttgtatttta
aatttctgatgagattgtactggaaaagtacttcaaaggggggcttattc
tggtgctaaaactagatgacaatggtggtggtagaagacgtagcaaggct
ccaatattcacagcatcctgtccagaagcatcccaaactagtgtaagggt
taagcactgggagggcaggaagatattatgttgtctcatccccagcccca
aacaggtactcaggggtagatggatgcatggaggatgggtggatatttgg
atgga
ttgctctggacttgaatagcgtcttactcacttctttctccccttctttt
ttccccaatgttggctccgtcaaacccagaacatcagaaatgctaggcag
gtgatcttgcatcagggctatctctctgccctgcattttggtcactttct
gttggatttttatttcttccttgttgtgcactgtacttcctgttgaacac
tggctctcattctgtttcaggtgtgtagactaatattagtctaaatatta
gtgcgtgggcatttcatatctttgtccttcaccagctcttttccttccaa
cccattttgaatttttggacaacagggatgactatggccaggacagccca
gttctcaggactcttttttttttttttttaaattaagtaaaacagagttt
taaaaatagaaactttgctaagacagccatttggcatgttaagaatcgaa
cttgagtttagtttctaaaataagtaattttagaaatgcttctaaaataa
ctgatatgccccttgttaaagctggggtggttgttgttgttggggttgga
tgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66793163_66793573
seq2: B6Ng01-202N05.b_42_452

seq1  GAATTCATGTCAGACCAAGGACAAAGAGCAAGGTCTGTAGCTTTTAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCAGACCAAGGACAAAGAGCAAGGTCTGTAGCTTTTAAGCC  50

seq1  ATGTTGCTTCCTACAGTGTGTGAGGGGAATTTTGCACCAGATAGCAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTTCCTACAGTGTGTGAGGGGAATTTTGCACCAGATAGCAGGAA  100

seq1  TTGACTTGTTCTATATTGAACCAAACACACTGCATTTTTACCTGGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTGTTCTATATTGAACCAAACACACTGCATTTTTACCTGGTTTGT  150

seq1  ATTTTAAATTTCTGATGAGATTGTACTGGAAAAGTACTTCAAAGGGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTTCTGATGAGATTGTACTGGAAAAGTACTTCAAAGGGGGGC  200

seq1  TTATTCTGGTGCTAAAACTAGATGACAATGGTGGTGGTAGAAGACGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGGTGCTAAAACTAGATGACAATGGTGGTGGTAGAAGACGTAGC  250

seq1  AAGGCTCCAATATTCACAGCATCCTGTCCAGAAGCATCCCAAACTAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCAATATTCACAGCATCCTGTCCAGAAGCATCCCAAACTAGTGT  300

seq1  AAGGGTTAAGCACTGGGAGGGCAGGAAGATATTATGTTGTCTCATCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTAAGCACTGGGAGGGCAGGAAGATATTATGTTGTCTCATCCCCA  350

seq1  GCCCCAAACAGGTACTCAGGGGTAGATGGATGCATGGAGGATGGGTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAACAGGTACTCAGGGGTAGATGGATGCATGGAGGATGGGTGGAT  400

seq1  ATTTGGATGGA  411
      |||||||||||
seq2  ATTTGGATGGA  411

seq1: chr5_66941123_66941682
seq2: B6Ng01-202N05.g_64_623 (reverse)

seq1  TCCATCCAACCCCAACAACAACAACCACCCCAGCTTTAACAAGGGGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCAACCCCAACAACAACAACCACCCCAGCTTTAACAAGGGGCATA  50

seq1  TCAGTTATTTTAGAAGCATTTCTAAAATTACTTATTTTAGAAACTAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATTTTAGAAGCATTTCTAAAATTACTTATTTTAGAAACTAAACT  100

seq1  CAAGTTCGATTCTTAACATGCCAAATGGCTGTCTTAGCAAAGTTTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCGATTCTTAACATGCCAAATGGCTGTCTTAGCAAAGTTTCTATT  150

seq1  TTTAAAACTCTGTTTTACTTAATTTAAAAAAAAAAAAAAAAGAGTCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTCTGTTTTACTTAATTTAAAAAAAAAAAAAAAAGAGTCCTGA  200

seq1  GAACTGGGCTGTCCTGGCCATAGTCATCCCTGTTGTCCAAAAATTCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGGCTGTCCTGGCCATAGTCATCCCTGTTGTCCAAAAATTCAAAA  250

seq1  TGGGTTGGAAGGAAAAGAGCTGGTGAAGGACAAAGATATGAAATGCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGGAAGGAAAAGAGCTGGTGAAGGACAAAGATATGAAATGCCCAC  300

seq1  GCACTAATATTTAGACTAATATTAGTCTACACACCTGAAACAGAATGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAATATTTAGACTAATATTAGTCTACACACCTGAAACAGAATGAGA  350

seq1  GCCAGTGTTCAACAGGAAGTACAGTGCACAACAAGGAAGAAATAAAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGTTCAACAGGAAGTACAGTGCACAACAAGGAAGAAATAAAAATC  400

seq1  CAACAGAAAGTGACCAAAATGCAGGGCAGAGAGATAGCCCTGATGCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAAGTGACCAAAATGCAGGGCAGAGAGATAGCCCTGATGCAAGA  450

seq1  TCACCTGCCTAGCATTTCTGATGTTCTGGGTTTGACGGAGCCAACATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCCTAGCATTTCTGATGTTCTGGGTTTGACGGAGCCAACATTGG  500

seq1  GGAAAAAAGAAGGGGAGAAAGAAGTGAGTAAGACGCTATTCAAGTCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAGAAGGGGAGAAAGAAGTGAGTAAGACGCTATTCAAGTCCAGA  550

seq1  GCAAGAATTC  560
      ||||||||||
seq2  GCAAGAATTC  560