BAC Information

Click to search

BAC

Clone NameB6Ng01-203C18
Chromosome5 (Build37)
Map Location 55,789,026 - 55,896,641
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203C18.bB6Ng01-203C18.g
ACCGA023461GA023462
length1,0581,129
definitionB6Ng01-203C18.b B6Ng01-203C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,895,518 - 55,896,641)(55,789,026 - 55,790,148)
sequence
gaattcatttggggatggcacgatgcaggtttcctttataatgtcagtgc
cagcttcggagcatacactttaactcactgagctatctcaccagtcctag
aattttaacttgtagagggcaataaggtccagttattacaagaatcccat
tgtatttaacagaaataattcttagagtaaatttttcaccacatgtatgg
tcagtgaaaaatgagaagcggtgattttatttatttacaaaggcattcat
tatctcaacagccaacccaggagttgtattttccaagtcagatcttccag
aatcgctatccttatgcccagggacgcatgctcagtaagacttatgaaag
gattatttagacacaacgttttgattccagacacattatctttctcttcc
tctgggctgagtagacaggaattaacatattttgtatggattaatgcctt
cgtttaatatctccgtggagaagggtttagagtattgcaaggcggtttat
gcatactgatttgaggaggcagaagagggaatggttgtttgttgacattt
tgcttttggtaaataaagtgacctttagctttcagctgtacacttgaatt
taagaaaagacaaatggaaatctggaaaccttggttaaacgccaagtgtg
tggaatacattgctttgtacttagaagtaagtattttttctttttctgtt
cctactataaaaatacagatatccatgaaggatggatgaccaaaatgatc
tcattaaaactgtctttgaaaaggtattaaccctttcagctccttcagtc
ctttctctaaaacctccattagggaccctgtgagaagctgttggtcctgt
gaaggctagatttccccagtgtaggcgaatggcaggtggtgagggtgggg
aggggaaaccatcctcatagaagcaggaaggagggaggacgggagagagg
gggatctcgataggaactcatggaaggggattacatttaacttgaataca
ttaatatcaataaatggaaaggatatttcatgtaaatcctttaggagagc
agtactca

gaattctcaactgaggcatccaaaatggctgagaagctcctaaagaaatg
tctaacttccttggtcatcaagaaaacaccaatcaaaacaaccctgagat
tccacctcacacaagtcagaatatctaagataaaaaattcatatgacagc
agttgctggcctggatgtggagaaagaagaacactcctccatcgttggtg
ggattgcaagcttgtacaaccactctggaaataagtctggtggttcctca
gaaaattggacatagtactacctgaggatccagctataccactatttggc
atatacccaaaagatgctccaacatataacaagaacacatgtgccactat
gttcatagcagtgttatttataatagccagaaactggaaagaacccatat
gttcttcaacataggagtggatacaggaaatgtggtacatttacacaatg
gagtactactcagctattaaaaattatgggtatacttttatatttggagc
aaaagttacatttttggtatatgttaaaattctgaattaatacatttctt
ttgtacttaactctactaaatcatctatctactttatattataattttct
atatctattcatgggtctcccatttttattttagcttcaaatatttcttc
tgtagtattgtaagatgaaagtgcatttattaatgtccaattgtcaaagt
cttctagtattttccaactggtaaacaatgagattaaacaatattgacat
gataaataagaccttcttattcagtagcattattttcacataaaccaaat
atcaccaagttgcagagaatatttattactatattaataaaccttgtgtc
tttcattatttaataattttcattgcgtgagcaaagtggcaccctgcagg
tacttagaactggtgtgcaaaccaatattcatcatataaccacttgaata
aatgcaggtttaagtagtgaaaaaagacagtaaagatgggagaatgtgac
attttattcctattaatattggaatttggagcaataataattacagaaaa
attgttttcagaaaagttgatttcaacaataaaagatcagcaatattttc
tttttctatggcatcaggaggagaagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55895518_55896641
seq2: B6Ng01-203C18.b_43_1100 (reverse)

seq1  TGAGTACATCTTTTTTTGCAAGATGTGTAAAGATGATGTGATGGGACTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AATACTTTATATGAGGTACTTGCTCTCCTAAAGGAATTACAATGTAAATA  100
                 ||| |||| ||||||||||||||| |||| ||| |||||
seq2  -----------TGA-GTAC-TGCTCTCCTAAAGGATTTAC-ATG-AAATA  35

seq1  TCTTTTCCTTTTTATTGAATATTTTATGTATTTAAGTTTAAATGTTATCC  150
      || |||||  ||||||| ||| || ||||||| ||| |||||||| ||||
seq2  TCCTTTCC-ATTTATTG-ATA-TTAATGTATTCAAG-TTAAATGTAATCC  81

seq1  CCTTTCCTGGTTTCCCTTCTGGAT-CCCCTCTCTCCCGTCCTCCCT-CTT  198
      |||| | ||  ||||  ||  ||| ||||||||||||||||||||| |||
seq2  CCTTCCATGAGTTCCTATCGAGATCCCCCTCTCTCCCGTCCTCCCTCCTT  131

seq1  CCTGCTTCTATGAGGAT-GCTTCCCCT-CCCACCCTCACCACCCTGCCAT  246
      ||||||||||||||||| | ||||||| ||||||||||||| ||||||||
seq2  CCTGCTTCTATGAGGATGGTTTCCCCTCCCCACCCTCACCA-CCTGCCAT  180

seq1  TCGCCTACACTGGGGAAATCTAGCCTTCACAGGACCAACAGCTTCTCACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTACACTGGGGAAATCTAGCCTTCACAGGACCAACAGCTTCTCACA  230

seq1  GGGTCCCTAATGGAGGTTTTAGAGAAAGGACTGAAGGAGCTGAAAGGGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCTAATGGAGGTTTTAGAGAAAGGACTGAAGGAGCTGAAAGGGTT  280

seq1  AATACCTTTTCAAAGACAGTTTTAATGAGATCATTTTGGTCATCCATCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTTTCAAAGACAGTTTTAATGAGATCATTTTGGTCATCCATCCT  330

seq1  TCATGGATATCTGTATTTTTATAGTAGGAACAGAAAAAGAAAAAATACTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATATCTGTATTTTTATAGTAGGAACAGAAAAAGAAAAAATACTT  380

seq1  ACTTCTAAGTACAAAGCAATGTATTCCACACACTTGGCGTTTAACCAAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAAGTACAAAGCAATGTATTCCACACACTTGGCGTTTAACCAAGG  430

seq1  TTTCCAGATTTCCATTTGTCTTTTCTTAAATTCAAGTGTACAGCTGAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGATTTCCATTTGTCTTTTCTTAAATTCAAGTGTACAGCTGAAAG  480

seq1  CTAAAGGTCACTTTATTTACCAAAAGCAAAATGTCAACAAACAACCATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGTCACTTTATTTACCAAAAGCAAAATGTCAACAAACAACCATTC  530

seq1  CCTCTTCTGCCTCCTCAAATCAGTATGCATAAACCGCCTTGCAATACTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGCCTCCTCAAATCAGTATGCATAAACCGCCTTGCAATACTCT  580

seq1  AAACCCTTCTCCACGGAGATATTAAACGAAGGCATTAATCCATACAAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTCTCCACGGAGATATTAAACGAAGGCATTAATCCATACAAAAT  630

seq1  ATGTTAATTCCTGTCTACTCAGCCCAGAGGAAGAGAAAGATAATGTGTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATTCCTGTCTACTCAGCCCAGAGGAAGAGAAAGATAATGTGTCT  680

seq1  GGAATCAAAACGTTGTGTCTAAATAATCCTTTCATAAGTCTTACTGAGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAAAACGTTGTGTCTAAATAATCCTTTCATAAGTCTTACTGAGCA  730

seq1  TGCGTCCCTGGGCATAAGGATAGCGATTCTGGAAGATCTGACTTGGAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCCCTGGGCATAAGGATAGCGATTCTGGAAGATCTGACTTGGAAAA  780

seq1  TACAACTCCTGGGTTGGCTGTTGAGATAATGAATGCCTTTGTAAATAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTCCTGGGTTGGCTGTTGAGATAATGAATGCCTTTGTAAATAAAT  830

seq1  AAAATCACCGCTTCTCATTTTTCACTGACCATACATGTGGTGAAAAATTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACCGCTTCTCATTTTTCACTGACCATACATGTGGTGAAAAATTT  880

seq1  ACTCTAAGAATTATTTCTGTTAAATACAATGGGATTCTTGTAATAACTGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAGAATTATTTCTGTTAAATACAATGGGATTCTTGTAATAACTGG  930

seq1  ACCTTATTGCCCTCTACAAGTTAAAATTCTAGGACTGGTGAGATAGCTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTGCCCTCTACAAGTTAAAATTCTAGGACTGGTGAGATAGCTCA  980

seq1  GTGAGTTAAAGTGTATGCTCCGAAGCTGGCACTGACATTATAAAGGAAAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTAAAGTGTATGCTCCGAAGCTGGCACTGACATTATAAAGGAAAC  1030

seq1  CTGCATCGTGCCATCCCCAAATGAATTC  1124
      ||||||||||||||||||||||||||||
seq2  CTGCATCGTGCCATCCCCAAATGAATTC  1058


seq1: chr5_55789026_55790148
seq2: B6Ng01-203C18.g_62_1190

seq1  GAATTCTCAACTGAGGCATCCAAAATGGCTGAGAAGCTCCTAAAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGGCATCCAAAATGGCTGAGAAGCTCCTAAAGAAATG  50

seq1  TCTAACTTCCTTGGTCATCAAGAAAACACCAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTCCTTGGTCATCAAGAAAACACCAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACAAGTCAGAATATCTAAGATAAAAAATTCATATGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACAAGTCAGAATATCTAAGATAAAAAATTCATATGACAGC  150

seq1  AGTTGCTGGCCTGGATGTGGAGAAAGAAGAACACTCCTCCATCGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTGGCCTGGATGTGGAGAAAGAAGAACACTCCTCCATCGTTGGTG  200

seq1  GGATTGCAAGCTTGTACAACCACTCTGGAAATAAGTCTGGTGGTTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAAGCTTGTACAACCACTCTGGAAATAAGTCTGGTGGTTCCTCA  250

seq1  GAAAATTGGACATAGTACTACCTGAGGATCCAGCTATACCACTATTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGACATAGTACTACCTGAGGATCCAGCTATACCACTATTTGGC  300

seq1  ATATACCCAAAAGATGCTCCAACATATAACAAGAACACATGTGCCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCCAAAAGATGCTCCAACATATAACAAGAACACATGTGCCACTAT  350

seq1  GTTCATAGCAGTGTTATTTATAATAGCCAGAAACTGGAAAGAACCCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGCAGTGTTATTTATAATAGCCAGAAACTGGAAAGAACCCATAT  400

seq1  GTTCTTCAACATAGGAGTGGATACAGGAAATGTGGTACATTTACACAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAACATAGGAGTGGATACAGGAAATGTGGTACATTTACACAATG  450

seq1  GAGTACTACTCAGCTATTAAAAATTATGGGTATACTTTTATATTTGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTACTCAGCTATTAAAAATTATGGGTATACTTTTATATTTGGAGC  500

seq1  AAAAGTTACATTTTTGGTATATGTTAAAATTCTGAATTAATACATTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTACATTTTTGGTATATGTTAAAATTCTGAATTAATACATTTCTT  550

seq1  TTGTACTTAACTCTACTAAATCATCTATCTACTTTATATTATAATTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTAACTCTACTAAATCATCTATCTACTTTATATTATAATTTTCT  600

seq1  ATATCTATTCATGGGTCTCCCATTTTTATTTTAGCTTCAAATATTTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATTCATGGGTCTCCCATTTTTATTTTAGCTTCAAATATTTCTTC  650

seq1  TGTAGTATTGTAAGATGAAAGTGCATTTATTAATGTCCAATTGTCAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTATTGTAAGATGAAAGTGCATTTATTAATGTCCAATTGTCAAAGT  700

seq1  CTTCTAGTATTTTCCAACTGGTAAACAATGAGATTAAACAATATTGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGTATTTTCCAACTGGTAAACAATGAGATTAAACAATATTGACAT  750

seq1  GATAAATAAGACCTTCTTATTCAGTAGCATTATTTTCACATAAACCAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATAAGACCTTCTTATTCAGTAGCATTATTTTCACATAAACCAAAT  800

seq1  ATCACCAAGTTGCAGAGAATATTTATTACTATATTAATAAACCTTGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAGTTGCAGAGAATATTTATTACTATATTAATAAACCTTGTGTC  850

seq1  TTTCATTATTTAATAATTTTCATTGCGTGAGCAAAGTGGCACCCTGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTATTTAATAATTTTCATTGCGTGAGCAAAGTGGCACCCTGCAGG  900

seq1  TACTTAGAAACTGGTGTGCAAACCAATATTCATCATATAACCACTTGAAT  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAG-AACTGGTGTGCAAACCAATATTCATCATATAACCACTTGAAT  949

seq1  AAATGCAAGGTTTAAGTAGTGAAAAAAGACAGTAAAGATGGGAGAATGTG  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGC-AGGTTTAAGTAGTGAAAAAAGACAGTAAAGATGGGAGAATGTG  998

seq1  ACA-TTTATTCCTATT-ATATTGGAATTT-GAGCAAATAATAAATAACAA  1047
      ||| |||||||||||| |||||||||||| |||| |||||||| ||   |
seq2  ACATTTTATTCCTATTAATATTGGAATTTGGAGC-AATAATAATTA--CA  1045

seq1  GAAAAAT--GTTTCAG-AAAGTGAATTTCA--CATAAAAGATCAGCAATA  1092
      |||||||   |||||| |||||  ||||||   |||||||||||||||||
seq2  GAAAAATTGTTTTCAGAAAAGTTGATTTCAACAATAAAAGATCAGCAATA  1095

seq1  T----TCTTTCTATGGGCATCAAGAGGAGAAGAGC  1123
      |    | ||||||| ||||||| ||||||||||||
seq2  TTTTCTTTTTCTAT-GGCATCAGGAGGAGAAGAGC  1129


| Home | SequenceCutter | Blast | Download |