BAC Information

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BAC

Clone NameB6Ng01-204F18
Chromosome5 (Build37)
Map Location 14,043,591 - 14,207,125
singlet/doubletdoublet
Overlap geneSema3e, LOC100042957
Upstream geneLOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204F18.bB6Ng01-204F18.g
ACCGA024326GA024327
length1,0681,154
definitionB6Ng01-204F18.b B6Ng01-204F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,206,051 - 14,207,125)(14,043,591 - 14,044,739)
sequence
gaattctgaattaagtctctgatcatagacaacattgtctgaagtcatca
tttcctctccttttgaggtatcagcatcatcaccacctcccaactgccta
taacaaatatttaagtggctgtcagacacgttgcctaagtgagttatctg
tactcacaagcttcctgacagtttagagcagttaaaagttaaagcaagaa
taaatcagaaataaaattgtcacatacaacgtcaatggtgctttatgata
taaaacaatttttgtgtgtggttaaggctaaataaccctaaaaagagttt
gcctcttttatgaacacactgaaaataatctaatttttaaactcatcagt
ctgctgatagcaagtataaagttcctaataaataaataaaccagaagaca
gataatttaagaaggcgcatctcatcgactctactattaatagaaatgcc
acaattttgttccaattttatatcatctctgagacttttcattatgtctt
ctgaaataacacagttgcaatcaattttgtagtatgtgtctgaattttct
agaactaagtcagagatactataacaggcacaaaaatggagacacagaat
tcttgtctggcttaattcctagactaatactaccaaagacattttgaaga
tgcataacttaaggattttgagaaggggagactacttgatgttctaggtg
gatatcatataataacataagtcctgagaaagatttgatgattaaaaaca
ggactatgtaatggaatttatgatagaggaagtaagggccaccagtgctt
cctttaaagatggcaaatggggcaataccagctcacagttgatccctcaa
agctgctgataacgataaagtaagttcccaattgggcagtcctcttaaca
tctcaattctcacctagtaattgcattttaggttttcccttagagaatta
tgagctagacatatggtgttctgccatgaaactcatgactgttgtaatgg
catagaaaagtgtacagctctcagagggagtgtggtgcttgctgtctttt
ttttgtctcttaactctg
gaattcccacagatttctaaaacagctgcagtagtttcaatcctacaaac
agtgaggagaattcccttttccttgaaccttgaccaacattgttcttaga
tgttttctctctttttagccatgacaactgaggtaagatgaaatttcaaa
gttatttcagttcgtatttcagtaattatgaaggattatgaacactttca
aagatagcccctccgccattttaatttctgcttctgagagctctctgttc
acatccttagcacacattttaattgaatcattgcatatacatacttttca
taaatcttatcattatttttattcatctatgggaagaagcttatgaattg
tttttactttctctttaatatatagttgtactggattttactaatattta
taattagaatgataaaaaaacatctttcttttattttaaaagtcagagag
tcacaggccaacttgccttcctttagctgactcagtgtattcagaattgg
acgttattttctacgatgatcatctgtcccttcctttttgtggtctacga
agtgcacatggattaacccagctggcccagtccctcaggaactgaggata
gttaatctccttcttgctatctcctgccaccaccagtccatctgttcatg
tagagtgagatagccgtacaggtggctactgcattgtttctcaagtctct
ttcgagctttcgagttccatcaatggtttggaaggtgagcattatagcag
ttgtttcatgattgatattgtcattaccagtaagtggctcttctttgcat
agtataagcaaagtgattattaaaaattcaaaccttttctgcttccattc
ctcaaaataacactaatggaagaatgcataatgcagttttagaaagatgt
atacttgggcatgattatgctgtgttctttagattcaagaactttccttc
ttgtcatatttttccaacagttcattggtttgatatttagacaggtctca
ttcagttgctacggcagtttctcaactcataggcaacaaaactaaaccaa
acaaactaaacaaaaaaccccttccctgtatttcagaccgcagtaagctg
gagaatgaatattatgttgctactacaactaaccttgtatgcgcctcttt
acag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14206051_14207125
seq2: B6Ng01-204F18.b_49_1116 (reverse)

seq1  CAGAGTTTAAGAGACAAAAAAAAGACAGGCAAGCACCACACTCCCTCTTG  50
      ||||| ||||||||||||||||||||| ||||||||||||||||||| ||
seq2  CAGAG-TTAAGAGACAAAAAAAAGACA-GCAAGCACCACACTCCCTC-TG  47

seq1  AGAGCTGTACAACTTTTTCTATGCCATTACAACAGTCATGAGTTTCATGG  100
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTACA--CTTTTCTATGCCATTACAACAGTCATGAGTTTCATGG  95

seq1  CAGAAACACCATATTGTCTAGCTCATAATTCTCTAAGGGAAAACCTAAAA  150
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAG-AACACCATA-TGTCTAGCTCATAATTCTCTAAGGGAAAACCTAAAA  143

seq1  TGCAATTACTAGGTGAGAATTGAGATGTTAAGAGGACTGCCCAATTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTACTAGGTGAGAATTGAGATGTTAAGAGGACTGCCCAATTGGGA  193

seq1  ACTTACTTTATCGTTATCAGCAGCTTTGAGGGATCAACTGTGAGCTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTTATCGTTATCAGCAGCTTTGAGGGATCAACTGTGAGCTGGTA  243

seq1  TTGCCCCATTTGCCATCTTTAAAGGAAGCACTGGTGGCCCTTACTTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCATTTGCCATCTTTAAAGGAAGCACTGGTGGCCCTTACTTCCTC  293

seq1  TATCATAAATTCCATTACATAGTCCTGTTTTTAATCATCAAATCTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAAATTCCATTACATAGTCCTGTTTTTAATCATCAAATCTTTCTC  343

seq1  AGGACTTATGTTATTATATGATATCCACCTAGAACATCAAGTAGTCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTATGTTATTATATGATATCCACCTAGAACATCAAGTAGTCTCCC  393

seq1  CTTCTCAAAATCCTTAAGTTATGCATCTTCAAAATGTCTTTGGTAGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAAATCCTTAAGTTATGCATCTTCAAAATGTCTTTGGTAGTATT  443

seq1  AGTCTAGGAATTAAGCCAGACAAGAATTCTGTGTCTCCATTTTTGTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGGAATTAAGCCAGACAAGAATTCTGTGTCTCCATTTTTGTGCCT  493

seq1  GTTATAGTATCTCTGACTTAGTTCTAGAAAATTCAGACACATACTACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGTATCTCTGACTTAGTTCTAGAAAATTCAGACACATACTACAAA  543

seq1  ATTGATTGCAACTGTGTTATTTCAGAAGACATAATGAAAAGTCTCAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGCAACTGTGTTATTTCAGAAGACATAATGAAAAGTCTCAGAGA  593

seq1  TGATATAAAATTGGAACAAAATTGTGGCATTTCTATTAATAGTAGAGTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAAATTGGAACAAAATTGTGGCATTTCTATTAATAGTAGAGTCG  643

seq1  ATGAGATGCGCCTTCTTAAATTATCTGTCTTCTGGTTTATTTATTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGCGCCTTCTTAAATTATCTGTCTTCTGGTTTATTTATTTATTA  693

seq1  GGAACTTTATACTTGCTATCAGCAGACTGATGAGTTTAAAAATTAGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTTATACTTGCTATCAGCAGACTGATGAGTTTAAAAATTAGATTA  743

seq1  TTTTCAGTGTGTTCATAAAAGAGGCAAACTCTTTTTAGGGTTATTTAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGTGTTCATAAAAGAGGCAAACTCTTTTTAGGGTTATTTAGCC  793

seq1  TTAACCACACACAAAAATTGTTTTATATCATAAAGCACCATTGACGTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACACACAAAAATTGTTTTATATCATAAAGCACCATTGACGTTGT  843

seq1  ATGTGACAATTTTATTTCTGATTTATTCTTGCTTTAACTTTTAACTGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACAATTTTATTTCTGATTTATTCTTGCTTTAACTTTTAACTGCTC  893

seq1  TAAACTGTCAGGAAGCTTGTGAGTACAGATAACTCACTTAGGCAACGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGTCAGGAAGCTTGTGAGTACAGATAACTCACTTAGGCAACGTGT  943

seq1  CTGACAGCCACTTAAATATTTGTTATAGGCAGTTGGGAGGTGGTGATGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCCACTTAAATATTTGTTATAGGCAGTTGGGAGGTGGTGATGAT  993

seq1  GCTGATACCTCAAAAGGAGAGGAAATGATGACTTCAGACAATGTTGTCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATACCTCAAAAGGAGAGGAAATGATGACTTCAGACAATGTTGTCTA  1043

seq1  TGATCAGAGACTTAATTCAGAATTC  1075
      |||||||||||||||||||||||||
seq2  TGATCAGAGACTTAATTCAGAATTC  1068

seq1: chr5_14043591_14044739
seq2: B6Ng01-204F18.g_67_1220

seq1  GAATTCCCACAGATTTCTAAAACAGCTGCAGTAGTTTCAATCCTACAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACAGATTTCTAAAACAGCTGCAGTAGTTTCAATCCTACAAAC  50

seq1  AGTGAGGAGAATTCCCTTTTCCTTGAACCTTGACCAACATTGTTCTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGAGAATTCCCTTTTCCTTGAACCTTGACCAACATTGTTCTTAGA  100

seq1  TGTTTTCTCTCTTTTTAGCCATGACAACTGAGGTAAGATGAAATTTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCTCTTTTTAGCCATGACAACTGAGGTAAGATGAAATTTCAAA  150

seq1  GTTATTTCAGTTCGTATTTCAGTAATTATGAAGGATTATGAACACTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCAGTTCGTATTTCAGTAATTATGAAGGATTATGAACACTTTCA  200

seq1  AAGATAGCCCCTCCGCCATTTTAATTTCTGCTTCTGAGAGCTCTCTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCCCCTCCGCCATTTTAATTTCTGCTTCTGAGAGCTCTCTGTTC  250

seq1  ACATCCTTAGCACACATTTTAATTGAATCATTGCATATACATACTTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTTAGCACACATTTTAATTGAATCATTGCATATACATACTTTTCA  300

seq1  TAAATCTTATCATTATTTTTATTCATCTATGGGAAGAAGCTTATGAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTATCATTATTTTTATTCATCTATGGGAAGAAGCTTATGAATTG  350

seq1  TTTTTACTTTCTCTTTAATATATAGTTGTACTGGATTTTACTAATATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTTCTCTTTAATATATAGTTGTACTGGATTTTACTAATATTTA  400

seq1  TAATTAGAATGATAAAAAAACATCTTTCTTTTATTTTAAAAGTCAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGAATGATAAAAAAACATCTTTCTTTTATTTTAAAAGTCAGAGAG  450

seq1  TCACAGGCCAACTTGCCTTCCTTTAGCTGACTCAGTGTATTCAGAATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGCCAACTTGCCTTCCTTTAGCTGACTCAGTGTATTCAGAATTGG  500

seq1  ACGTTATTTTCTACGATGATCATCTGTCCCTTCCTTTTTGTGGTCTACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTATTTTCTACGATGATCATCTGTCCCTTCCTTTTTGTGGTCTACGA  550

seq1  AGTGCACATGGATTAACCCAGCTGGCCCAGTCCCTCAGGAACTGAGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACATGGATTAACCCAGCTGGCCCAGTCCCTCAGGAACTGAGGATA  600

seq1  GTTAATCTCCTTCTTGCTATCTCCTGCCACCACCAGTCCATCTGTTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCTCCTTCTTGCTATCTCCTGCCACCACCAGTCCATCTGTTCATG  650

seq1  TAGAGTGAGATAGCCGTACAGGTGGCTACTGCATTGTTTCTCAAGTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGAGATAGCCGTACAGGTGGCTACTGCATTGTTTCTCAAGTCTCT  700

seq1  TTCGAGCTTTCGAGTTCCATCAATGGTTTGGAAGGTGAGCATTATAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGCTTTCGAGTTCCATCAATGGTTTGGAAGGTGAGCATTATAGCAG  750

seq1  TTGTTTCATGATTGATATTGTCATTACCAGTAAGTGGCTCTTCTTTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATGATTGATATTGTCATTACCAGTAAGTGGCTCTTCTTTGCAT  800

seq1  AGTATAAGCAAAGTGATTATTAAAAATTCAAACCTTTTCTGCTTCCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGCAAAGTGATTATTAAAAATTCAAACCTTTTCTGCTTCCATTC  850

seq1  CTCAAAATAACACTAATGGAAGAATGCATAATGCAGTTTTAGAAAGATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATAACACTAATGGAAGAATGCATAATGCAGTTTTAGAAAGATGT  900

seq1  ATACTT-GGCATGATTATGCTGTGTTCTTTAAGATTCAAGAACTTTCCTT  949
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  ATACTTGGGCATGATTATGCTGTGTTCTTT-AGATTCAAGAACTTTCCTT  949

seq1  CTTGTCATA-TTTTCCAACAGTTCATTTGGTTTGATATTTAGACAGGGTC  998
      ||||||||| ||||||||||||||| ||||||||||||||||||| ||||
seq2  CTTGTCATATTTTTCCAACAGTTCA-TTGGTTTGATATTTAGACA-GGTC  997

seq1  TCATTCAGTTGCTACGGCAGTTTCTCAAACTCATAGGCAAACAAAAACCA  1048
      |||||||||||||||||||||||||| ||||||||||| |||||||  | 
seq2  TCATTCAGTTGCTACGGCAGTTTCTC-AACTCATAGGC-AACAAAA--CT  1043

seq1  AAACCAAACAAAC-AAACAAAAAACCCCT--CCTGTA-TTCAGACCGCAA  1094
      ||||||||||||| |||||||||||||||  |||||| ||||||||||| 
seq2  AAACCAAACAAACTAAACAAAAAACCCCTTCCCTGTATTTCAGACCGCAG  1093

seq1  GTAGCT-GAG-ATG-ATATTATG-TGCTACTACAACTAACTTGGTATGCG  1140
        |||| ||| ||| |||||||| |||||||||||||||| | |||||||
seq2  TAAGCTGGAGAATGAATATTATGTTGCTACTACAACTAACCTTGTATGCG  1143

seq1  --TCTTTACAG  1149
        |||||||||
seq2  CCTCTTTACAG  1154