BAC Information

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BAC

Clone NameB6Ng01-204I18
Chromosome5 (Build37)
Map Location 107,944,884 - 108,149,933
singlet/doubletdoublet
Overlap gene1700028K03Rik, Glmn, AW060207, Gfi1
Upstream geneEG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342
Downstream geneLOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204I18.bB6Ng01-204I18.g
ACCGA024466GA024467
length1,116467
definitionB6Ng01-204I18.b B6Ng01-204I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,944,884 - 107,945,981)(108,149,461 - 108,149,933)
sequence
gaattcctcttcatgtaaatgcagcatgcccagcaactcagccccagcca
ataatgtacacccaccctgacaatccctacccaggccctcaaatctatat
agcccttgttcaccttgaataaggttgaagctaatcctggaagccactct
gtcgtactcaaagctgtctgaaccctaccatctcatgcctctgctcccct
cacccttgtaggccaatggccaaagacctctgaggaaagggagacccaca
aggagaaacaggagatacttggcctatctaagagatagaactgaacaaac
tagtaattaggtagagaaatgagatgtcaacttagaagatttaggtttct
gactaggttggcctgggtggctgatgatgtcatcaaccaaaatttaaaat
gagtgtaggcgaaggataagtttaattgaggacacagtgagtgtgagatt
cctaagggacattcaaagagctagggacaaaaatactgttgaacattcaa
gagaagaaaatcctgaggagcctaaaaaaggaatgctcagaactagaagc
agaaagccatcctgaaggaaaggaagatgtatgtaatcttgatgctcttt
agaggagggtacttcagagtacatgatcctacttcaactgctcaacccca
taacccatgaggattgttggtagcatttttctcttgtaaaggcaatgtta
gcaagagaacaggtgttgaggtcctcctcccattttatgaatacaacttg
cctttgtctacgccaaagtgttcataactttcatatccaacgtagtctac
ccccctacacacacacacacacacacacacacacacacacacacacacac
actgcgatccacccattaaagagtaagaatttgaaagccttcatggtaat
ctgcctgttaattccaatacttagaagaggcagtcagtaccatctatttc
agagccaaccttaatctattgtagaaggaggctgttctctaaattaaata
attctcagatggctttgttcttagaatgtttacaattagcactagacact
tgaatttttttttaatttcaaaatacggtctgattgaaatgcttcaccag
cttatggagcttgctg
tgttggagatttgttgacatttgctgctaatgcactgactttactgttta
tgttcccttcatccttcctgactggcaagggagggtctcagttcatgcgc
agcgtccagtagcgaatgctggtcattcattcattcattcattcattgct
ttataacttgcctaaatctaaggctttaggcacctgagaatcctgtagca
cagcaggtcctgtatggtggattaaagagagggagataagcaaaatacta
cacaagtgtctgtgacagcagcccatctggtccaaaccccacagtgactg
gggaggaggggcaatctaagtggctgaggtcctgctgaggagggtgtcaa
tgggtgtcaaaaatgcagggcggagctacgcttttgtcctggggtgtgga
gggttgtggctgtaaagtgttttagtagttaatcagtaggtgttgaatga
tggggtggagggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_107944884_107945981
seq2: B6Ng01-204I18.b_43_1158

seq1  GAATTCCTCTTCATGTAAATGCAGCATGCCCAGCAACTCAGCCCCAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCATGTAAATGCAGCATGCCCAGCAACTCAGCCCCAGCCA  50

seq1  ATAATGTACACCCACCCTGACAATCCCTACCCAGGCCCTCAAATCTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTACACCCACCCTGACAATCCCTACCCAGGCCCTCAAATCTATAT  100

seq1  AGCCCTTGTTCACCTTGAATAAGGTTGAAGCTAATCCTGGAAGCCACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTGTTCACCTTGAATAAGGTTGAAGCTAATCCTGGAAGCCACTCT  150

seq1  GTCGTACTCAAAGCTGTCTGAACCCTACCATCTCATGCCTCTGCTCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTACTCAAAGCTGTCTGAACCCTACCATCTCATGCCTCTGCTCCCCT  200

seq1  CACCCTTGTAGGCCAATGGCCAAAGACCTCTGAGGAAAGGGAGACCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGTAGGCCAATGGCCAAAGACCTCTGAGGAAAGGGAGACCCACA  250

seq1  AGGAGAAACAGGAGATACTTGGCCTATCTAAGAGATAGAACTGAACAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAACAGGAGATACTTGGCCTATCTAAGAGATAGAACTGAACAAAC  300

seq1  TAGTAATTAGGTAGAGAAATGAGATGTCAACTTAGAAGATTTAGGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTAGGTAGAGAAATGAGATGTCAACTTAGAAGATTTAGGTTTCT  350

seq1  GACTAGGTTGGCCTGGGTGGCTGATGATGTCATCAACCAAAATTTAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGTTGGCCTGGGTGGCTGATGATGTCATCAACCAAAATTTAAAAT  400

seq1  GAGTGTAGGCGAAGGATAAGTTTAATTGAGGACACAGTGAGTGTGAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAGGCGAAGGATAAGTTTAATTGAGGACACAGTGAGTGTGAGATT  450

seq1  CCTAAGGGACATTCAAAGAGCTAGGGACAAAAATACTGTTGAACATTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGGACATTCAAAGAGCTAGGGACAAAAATACTGTTGAACATTCAA  500

seq1  GAGAAGAAAATCCTGAGGAGCCTAAAAAAGGAATGCTCAGAACTAGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAAATCCTGAGGAGCCTAAAAAAGGAATGCTCAGAACTAGAAGC  550

seq1  AGAAAGCCATCCTGAAGGAAAGGAAGATGTATGTAATCTTGATGCTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCATCCTGAAGGAAAGGAAGATGTATGTAATCTTGATGCTCTTT  600

seq1  AGAGGAGGGTACTTCAGAGTACATGATCCTACTTCAACTGCTCAACCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGGTACTTCAGAGTACATGATCCTACTTCAACTGCTCAACCCCA  650

seq1  TAACCCATGAGGATTGTTGGTAGCATTTTTCTCTTGTAAAGGCAATGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCATGAGGATTGTTGGTAGCATTTTTCTCTTGTAAAGGCAATGTTA  700

seq1  GCAAGAGAACAGGTGTTGAGGTCCTCCTCCCATTTTATGAATACAACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGAACAGGTGTTGAGGTCCTCCTCCCATTTTATGAATACAACTTG  750

seq1  CCTTTGTCTACGCCAAAGTGTTCATAAC-TTCATATCCAACGTAGTCTAC  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTTTGTCTACGCCAAAGTGTTCATAACTTTCATATCCAACGTAGTCTAC  800

seq1  CCCCCTACACACACACACACACACACACACACACACACACACACACACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTACACACACACACACACACACACACACACACACACACACACACAC  850

seq1  ACTGGGATCCA-CCATT-AAGAGTAAAGAATTTGAAAGCCTTCATGGTAA  897
      |||| |||||| ||||| |||||| |||||||||||||||||||||||||
seq2  ACTGCGATCCACCCATTAAAGAGT-AAGAATTTGAAAGCCTTCATGGTAA  899

seq1  TCTGCCTG-TAATTCCAATACTTAGAAGAGGCAG-CAAGACCA--CAATT  943
      |||||||| ||||||||||||||||||||||||| ||  ||||   | ||
seq2  TCTGCCTGTTAATTCCAATACTTAGAAGAGGCAGTCAGTACCATCTATTT  949

seq1  CAGAGCCAACC-TAATCTA-TGTAGGAAGAAGCTG-TCTCTAAA-TAAAT  989
      ||||||||||| ||||||| ||||| | || |||| |||||||| |||||
seq2  CAGAGCCAACCTTAATCTATTGTAGAAGGAGGCTGTTCTCTAAATTAAAT  999

seq1  AA-TCTCAGA-GGCTT--GTCTAAGAAATGTTTACAA-TAGCACTAGACA  1034
      || ||||||| |||||   ||| || ||||||||||| ||||||||||||
seq2  AATTCTCAGATGGCTTTGTTCTTAG-AATGTTTACAATTAGCACTAGACA  1048

seq1  C-TGAA-TTTTTTTTAATATCAAAATA-GGGCTGA-TGAGATGGCTCAGC  1080
      | |||| ||||||||||| |||||||| || |||| ||| |||  ||| |
seq2  CTTGAATTTTTTTTTAATTTCAAAATACGGTCTGATTGAAATGCTTCACC  1098

seq1  AGCTAAAGGAGCTTGCTG  1098
      |||| | |||||||||||
seq2  AGCTTATGGAGCTTGCTG  1116

seq1: chr5_108149461_108149933
seq2: B6Ng01-204I18.g_68_540 (reverse)

seq1  TCTCTCCCTCCACCCCATCATTCAACACCTACTGATTAACTACTAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTCCACCCCATCATTCAACACCTACTGATTAACTACTAAAACA  50

seq1  CTTTACAGCCACAACCCTCCACACCCCAGGACAAAAGCGTAGCTCCGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGCCACAACCCTCCACACCCCAGGACAAAAGCGTAGCTCCGCCC  100

seq1  TGCATTTTTGACACCCATTGACACCCTCCTCAGCAGGACCTCAGCCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTTGACACCCATTGACACCCTCCTCAGCAGGACCTCAGCCACTT  150

seq1  AGATTGCCCCTCCTCCCCAGTCACTGTGGGGTTTGGACCAGATGGGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCCCCTCCTCCCCAGTCACTGTGGGGTTTGGACCAGATGGGCTGC  200

seq1  TGTCACAGACACTTGTGTAGTATTTTGCTTATCTCCCTCTCTTTAATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGACACTTGTGTAGTATTTTGCTTATCTCCCTCTCTTTAATCCA  250

seq1  CCATACAGGACCTGCTGTGCTACAGGATTCTCAGGTGCCTAAAGCCTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAGGACCTGCTGTGCTACAGGATTCTCAGGTGCCTAAAGCCTTAG  300

seq1  ATTTAGGCAAGTTATAAAGCAATGAATGAATGAATGAATGAATGACCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGCAAGTTATAAAGCAATGAATGAATGAATGAATGAATGACCAGC  350

seq1  ATTCGCTACTGGACGCTGCGCATGAACTGAGACCCTCCCTTGCCAGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCTACTGGACGCTGCGCATGAACTGAGACCCTCCCTTGCCAGTCAG  400

seq1  GAAGGATGAAGGGAACATAAACAGTAAAGTCAGTGCATTAGCAGCAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGAAGGGAACATAAACAGTAAAGTCAGTGCATTAGCAGCAAATG  450

seq1  TCAACAAATCTCCAACAGAATTC  473
      |||||||||||||||||||||||
seq2  TCAACAAATCTCCAACAGAATTC  473