BAC Information

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BAC

Clone NameB6Ng01-206I24
Chromosome5 (Build37)
Map Location 79,472,103 - 79,613,776
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206I24.bB6Ng01-206I24.g
ACCGA025945GA025946
length9901,211
definitionB6Ng01-206I24.b B6Ng01-206I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,472,103 - 79,473,099)(79,612,579 - 79,613,776)
sequence
gaattcattaattcctgggtttcaaaattgtatcctgccatgacagaaag
aaatttcacactcttctttgtcagtagtaatcccaattcatgagctgtgt
ccttcccacagccttgtggaggctaaatagaccataagtgtttgccacag
ttggtcttctgtctacctaggtggagtcttctgtcttgccacacctgcta
aatattaaactttgagccttgatcagaaacttttgtcttggcttttccct
tctctcgcctgcctgtcccttttcattcccagcctccctttcaggtaccc
agttcatccatagctgctggacagctacaatgtgctatcacactatgaaa
ttaaacacacacacacacacgcacacgcacacgcacacgcacacgcacac
gcacacgcacacgcacacgcacacgcacacgcacacgcacacacacacac
acacacacagacacttagaaattttttaaatatattaaacttcctaagta
tatagtgatactgatgctacagttgtattaatggattctgcagtattgtc
ctctctgagagcttagaggtatattttgacatttcagttttgagaaacct
accaaaaacttaatagttgccttattgtagagaacaaggatttcccagaa
acgtgggcataggctagaaaggtgaacagaatgggcccggaacaattttt
attgcatatcaaaaatttattattcaaattaattagagattttgaagtca
aaatttacaatttttcgattagttcattaaaaatttgaggccaggcatgg
tggcacaagcctttaatcccagcacttgtgaggcagaggcaggtggattt
cttagttcaaagggcagcctgatctacagagtaagttccaggacagccag
ggctacacagagaaccctgtctcaaacactccgcaaccccccaaattttg
aagtcactatcctgtgtatcatagatattactattttgaa

gaattcaaaaagagtttgagaggatgagtttattcttcagtaagcctgtt
agacaataattacatctagcaaataaaaggtatattttatctctaattca
tcatttattttaattgtaatcattttaatacatttaacatatttcataat
tttacctgactactttgtctttaaagattttcattaaaatttaattatac
tattcccccccccaccttttttttttcttggtccaaatctttctgattca
tctccctccaactcttgctgtgtctcctgcctctctctagttgataacct
gtttttctttggttattattgtgacatatatatgtgtatatgtggctcag
cttttttgtatatggtttcaattctgataactttatattgggtagtcaat
taaaaatgtcaaccctgggaaaggcaaattcttcctatttccacagctat
aagtttcctgtaattctttatctagtgtggggtcaaaaatttgtttcatc
aacattccagaaacgtcatccatgacttacagcaaatttatatactctgc
cttctttcgttcacacaggcaaatattgaagaaaactattcatagacaaa
atattataatcattttatgttgcattcttatgttattctatattttattt
gcttaaatttaaattatgatagtaaaaaatctagttatttataaatttgt
ccaagtgaaatgtaagaagtttattacaatattagactgagcttttgcca
aagagaaacataatctctctctctccctctctctctctctgtgtgggtga
cagagagagagagagagagagagagagaccgacagacagacagacagaga
gacagagagaaacagagagaagagagagacagagaaagagagacgacgga
gaccgagaagtactgggaaaaatagtaaaaaggacagaaatgtagaaaag
gagaagagagacagagaagaagaatgtgacaccttaatataagaatttta
tgaatctaaccacacctgaatctgttttcctactaaatgaattaagaata
agccctttccttatcccctgtaaacaattaagtgaatgccaaaccaccat
ccattttcctcacctgtcctgaaaataccctgtattgaaacataagaacc
tcccattctcatactctgtaccacttccaaatattcacaccccaccagac
actttctttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79472103_79473099
seq2: B6Ng01-206I24.b_50_1039

seq1  GAATTCATTAATTCCTGGGTTTCAAAATTGTATCCTGCCATGACAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATTCCTGGGTTTCAAAATTGTATCCTGCCATGACAGAAAG  50

seq1  AAATTTCACACTCTTCTTTGTCAGTAGTAATCCCAATTCATGAGCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCACACTCTTCTTTGTCAGTAGTAATCCCAATTCATGAGCTGTGT  100

seq1  CCTTCCCACAGCCTTGTGGAGGCTAAATAGACCATAAGTGTTTGCCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCACAGCCTTGTGGAGGCTAAATAGACCATAAGTGTTTGCCACAG  150

seq1  TTGGTCTTCTGTCTACCTAGGTGGAGTCTTCTGTCTTGCCACACCTGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTCTGTCTACCTAGGTGGAGTCTTCTGTCTTGCCACACCTGCTA  200

seq1  AATATTAAACTTTGAGCCTTGATCAGAAACTTTTGTCTTGGCTTTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAACTTTGAGCCTTGATCAGAAACTTTTGTCTTGGCTTTTCCCT  250

seq1  TCTCTCGCCTGCCTGTCCCTTTTCATTCCCAGCCTCCCTTTCAGGTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCGCCTGCCTGTCCCTTTTCATTCCCAGCCTCCCTTTCAGGTACCC  300

seq1  AGTTCATCCATAGCTGCTGGACAGCTACAATGTGCTATCACACTATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCCATAGCTGCTGGACAGCTACAATGTGCTATCACACTATGAAA  350

seq1  TTAAACACACACACACACACGCACACGCACACGCACACGCACACGCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACACACACACACACGCACACGCACACGCACACGCACACGCACAC  400

seq1  GCACACGCACACGCACACGCACACGCACACGCACACGCACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGCACACGCACACGCACACGCACACGCACACGCACACACACACAC  450

seq1  ACACACACAGACACTTAGAAATTTTTTAAATATATTAAACTTCCTAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGACACTTAGAAATTTTTTAAATATATTAAACTTCCTAAGTA  500

seq1  TATAGTGATACTGATGCTACAGTTGTATTAATGGATTCTGCAGTATTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGATACTGATGCTACAGTTGTATTAATGGATTCTGCAGTATTGTC  550

seq1  CTCTCTGAGAGCTTAGAGGTATATTTTGACATTTCAGTTTTGAGAAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAGAGCTTAGAGGTATATTTTGACATTTCAGTTTTGAGAAACCT  600

seq1  ACCAAAAACTTAATAGTTGCCTTATTGTAGAGAACAAGGATTTCCCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAACTTAATAGTTGCCTTATTGTAGAGAACAAGGATTTCCCAGAA  650

seq1  ACGTGGGCATAGGCTAGAAAGGTGAACAGAATGGGCCCGGAACAATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGGCATAGGCTAGAAAGGTGAACAGAATGGGCCCGGAACAATTTTT  700

seq1  ATTGCATATCAAAAATTTATTATTCAAATTAATTAGAGATTTTGAAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATATCAAAAATTTATTATTCAAATTAATTAGAGATTTTGAAGTCA  750

seq1  AAATTTACAATTTTTCGATTAGTTCATTAAAAATTTGAGGCCAGGCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACAATTTTTCGATTAGTTCATTAAAAATTTGAGGCCAGGCATGG  800

seq1  TGGCACAAGCCTTTAATCCCAGCACTTGTGAGGCAGAGGCAGGTGGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAAGCCTTTAATCCCAGCACTTGTGAGGCAGAGGCAGGTGGATTT  850

seq1  CTTAGTTC-AAGGGCAGCCTGATCTACAGAGTAAGTTCCAGGACAGCCAG  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTCAAAGGGCAGCCTGATCTACAGAGTAAGTTCCAGGACAGCCAG  900

seq1  GGCTACACAGAGAAACCCTGTCTCAAAACACTCCCGCAACCCCCCAAAAT  949
      |||||||||||| ||||||||||| ||||||| |||||||||||||||  
seq2  GGCTACACAGAG-AACCCTGTCTC-AAACACT-CCGCAACCCCCCAAA--  945

seq1  TTTTGAAGTCCACTATTCCTGTGTATCAATAGATATTACTATTTTGAA  997
      ||||||||| ||||| ||||||||||| ||||||||||||||||||||
seq2  TTTTGAAGT-CACTA-TCCTGTGTATC-ATAGATATTACTATTTTGAA  990


seq1: chr5_79612579_79613776
seq2: B6Ng01-206I24.g_67_1277 (reverse)

seq1  GGAAAGAAAGTG-CTGGTGGGTGGAAAATATTT-GAAGTGGTACAGAGT-  47
      |||||||||||| ||||||||  |  ||||||| ||||||||||||||| 
seq2  GGAAAGAAAGTGTCTGGTGGGGTGTGAATATTTGGAAGTGGTACAGAGTA  50

seq1  --AGAATAGGGAAG-TCTCTAGTTTC-ATACAGAGTATTTTCAAGGACA-  92
        ||||| |||| | |||   ||||| |||||| |||||||| |||||| 
seq2  TGAGAAT-GGGAGGTTCTTATGTTTCAATACAGGGTATTTTC-AGGACAG  98

seq1  --GTAGAAAATGAATGGTG--TTTGCAATCACTTAAAATTGTTTACAGGG  138
        |  ||||||| ||||||  || ||| ||||||  ||||||||||||||
seq2  GTGAGGAAAATGGATGGTGGTTTGGCATTCACTT--AATTGTTTACAGGG  146

seq1  GATAAAGGAAAAGGCTTA-TCTTAATTCATTTAGTAAGAAAACAGA-TCA  186
      ||| ||||||| |||||| ||||||||||||||||| ||||||||| |||
seq2  GAT-AAGGAAAGGGCTTATTCTTAATTCATTTAGTAGGAAAACAGATTCA  195

seq1  GTTGTGTTTAGATTCATAAAAT--CTATATTAA-GTGTCACATTCTTC-T  232
      | |||| |||||||||||||||   |||||||| |||||||||||||| |
seq2  GGTGTGGTTAGATTCATAAAATTCTTATATTAAGGTGTCACATTCTTCTT  245

seq1  CTCTGTCTCTC-TCTCCTTTTCTACATTTCTGTCCTTTTTACTATTTTTC  281
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTCTTCTCCTTTTCTACATTTCTGTCCTTTTTACTATTTTTC  295

seq1  CCAGTACTTCTCTGTCTCTGTCTGTCTCTCTTTCTCTGTCTCTCTCTTCT  331
      |||||||||||| ||||| ||| |||||||||||||||||||||||||||
seq2  CCAGTACTTCTCGGTCTCCGTC-GTCTCTCTTTCTCTGTCTCTCTCTTCT  344

seq1  CTCTGTTTCTCTCTGTCTCTCTGTCTGTCTGTCTGTCGGTCTCTCTCTCT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTCTCTCTGTCTCTCTGTCTGTCTGTCTGTCGGTCTCTCTCTCT  394

seq1  CTCTCTCTCTCTCTCTGTCACCCACACAGAGAGAGAGAGAGGGAGAGAGA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTGTCACCCACACAGAGAGAGAGAGAGGGAGAGAGA  444

seq1  GAGATTATGTTTCTCTTTGGCAAAAGCTCAGTCTAATATTGTAATAAACT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTATGTTTCTCTTTGGCAAAAGCTCAGTCTAATATTGTAATAAACT  494

seq1  TCTTACATTTCACTTGGACAAATTTATAAATAACTAGATTTTTTACTATC  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATTTCACTTGGACAAATTTATAAATAACTAGATTTTTTACTATC  544

seq1  ATAATTTAAATTTAAGCAAATAAAATATAGAATAACATAAGAATGCAACA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAAATTTAAGCAAATAAAATATAGAATAACATAAGAATGCAACA  594

seq1  TAAAATGATTATAATATTTTGTCTATGAATAGTTTTCTTCAATATTTGCC  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGATTATAATATTTTGTCTATGAATAGTTTTCTTCAATATTTGCC  644

seq1  TGTGTGAACGAAAGAAGGCAGAGTATATAAATTTGCTGTAAGTCATGGAT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAACGAAAGAAGGCAGAGTATATAAATTTGCTGTAAGTCATGGAT  694

seq1  GACGTTTCTGGAATGTTGATGAAACAAATTTTTGACCCCACACTAGATAA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTTCTGGAATGTTGATGAAACAAATTTTTGACCCCACACTAGATAA  744

seq1  AGAATTACAGGAAACTTATAGCTGTGGAAATAGGAAGAATTTGCCTTTCC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACAGGAAACTTATAGCTGTGGAAATAGGAAGAATTTGCCTTTCC  794

seq1  CAGGGTTGACATTTTTAATTGACTACCCAATATAAAGTTATCAGAATTGA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGACATTTTTAATTGACTACCCAATATAAAGTTATCAGAATTGA  844

seq1  AACCATATACAAAAAAGCTGAGCCACATATACACATATATATGTCACAAT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATATACAAAAAAGCTGAGCCACATATACACATATATATGTCACAAT  894

seq1  AATAACCAAAGAAAAACAGGTTATCAACTAGAGAGAGGCAGGAGACACAG  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCAAAGAAAAACAGGTTATCAACTAGAGAGAGGCAGGAGACACAG  944

seq1  CAAGAGTTGGAGGGAGATGAATCAGAAAGATTTGGACCAAGAAAAAAAAA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTGGAGGGAGATGAATCAGAAAGATTTGGACCAAGAAAAAAAAA  994

seq1  AGGTGGGGGGGGGAATAGTATAATTAAATTTTAATGAAAATCTTTAAAGA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGGGGGGAATAGTATAATTAAATTTTAATGAAAATCTTTAAAGA  1044

seq1  CAAAGTAGTCAGGTAAAATTATGAAATATGTTAAATGTATTAAAATGATT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGTCAGGTAAAATTATGAAATATGTTAAATGTATTAAAATGATT  1094

seq1  ACAATTAAAATAAATGATGAATTAGAGATAAAATATACCTTTTATTTGCT  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAAAATAAATGATGAATTAGAGATAAAATATACCTTTTATTTGCT  1144

seq1  AGATGTAATTATTGTCTAACAGGCTTACTGAAGAATAAACTCATCCTCTC  1181
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAATTATTGTCTAACAGGCTTACTGAAGAATAAACTCATCCTCTC  1194

seq1  AAACTCTTTTTGAATTC  1198
      |||||||||||||||||
seq2  AAACTCTTTTTGAATTC  1211


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