BAC Information

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BAC

Clone NameB6Ng01-207E22
Chromosome5 (Build37)
Map Location 87,559,626 - 87,560,732
singlet/doubletsinglet
Overlap geneUgt2b5
Upstream geneUbe1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440
Downstream geneLOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207E22.bB6Ng01-207E22.g
ACCGA026498GA026499
length1,1981,115
definitionB6Ng01-207E22.b B6Ng01-207E22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatgggattatttgatt
ttctggagtccaccttcttgagttctttacatatattggatattaatccc
ctatctgatttaggataggtaaagatactttcataatctgttggtggctt
attgacggtgtttttgccttgcagaagctttgcagtttcatgaggtccca
tttgtcaattctcgatcttacagcacaggccattgctgttctattcagaa
atttttcccctgtgtccattgctttgaggcttttccccactttctcctct
ataagattcagtgtctctggttttatgtggcgttccttgatccacttaga
tttgaccttactacaaggagataggaatggatcagttcacattcttctac
atagtaaccaccagttgtgccagcaccatttgttgaaaatgatgtctttc
ttccactggatgattttagctcccttgtcaaaaatcaagtgaccataggt
atgtgggttcatttctgggtcttcaattctattccattggtctacatgtc
tgtcagtataccaataccatgcagttttaatggggattgcattgaatctg
tagattgcttttgtcaagataaccatttttacaacgttgatcctgcccat
ccatgagcatgggagatctttccatcttctgaaatcttctttaatttctt
tcttcagagacttgacgtttttatcatacagatctttcacttccttagtt
agagtcacgccgagatattttatattatttgtgactattgagaagggtgt
tgtttccctaatttctttctcagcctgtttattctttgtgtaggagaaag
gccattgacttgtttgagttaagtttatatccagctacttcaccaaagct
gtttatcaggtttaggagttctctggtagaatttttaggggcacttatat
attctatcatatcatctgcaaaaagtgatattttgacttcatcttttcca
atttgtatccccttgaatatccctttgtgtcgaattgcttcttgtctagg
actccagtacaatgtgatagtagggagaaagtgggcagcctgtctacctc
cctgatttaatggggattgcttccagctctcaccataccttgatgaatgc
tactggattgcgcactagaactggctttataatccatgagctatgaga
gaattcttataaaatagttagttactattgataaagacaatgaagattgc
caagaattaatcaagcctcaaagagagataaaagatgttatggtctttct
gaagttatgtagaaatgtagggacatacaaatctagagcaaaattacctg
ttttaggaatgtttgctctaccaaaaaaaaaaaaatgatgttggttaagt
ggtcactttaagaagcaaagtaaattgtccttatcacagttcaatgctca
gaatgcagctggagcaacaggttcctccatgtgtactttttggttggtgg
tttagtctctggaggctctgtgtggtctggttggttgatattatggttct
tcctatgggatttcaaacctcttaagcttcttcagttcttcccctaactt
ctccattcaggtccctgttctcagttcgagggttggctgcaagtatccac
agatgtatttgttaggctctaacagagtctcttaggagacaggtatatca
ggcacctgtcagcaagcacttcttggcatcaccaatagtgtctgcgtctg
atgcctgcatattggatggatccccacatggggcagccctggatgacctt
tccttcagtctgctccactcttagtgttgattgtttttaaattgtccttt
tcgtgggtactaacaggtgttctaattactagtggcccctgatattactc
agtgtctgatctttttaaatttttcagatataataatcagtccatattta
tgtagcacatcctaagtcatgtcagatatagattataactctttcctttt
ggaggtgactatataatcaatactataagcctgaaagagggcctgcatca
cagtctcaaaaacctttccagcatttgatttgacacataatagtagattt
tggccatgcctttggggtaatacagccccattgaatatcaaatctggtgt
tctttaaggattcagtaaaagaacagaaaagctacatatacccttaatta
tccaggatgaatagtataggtgtaaatgaagttcttcaaattccatacag
tgaaggccaatcttaagccataatggtgtcgtgtagaatatcagggtata
aagctcaatttggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87559626_87560732
seq2: B6Ng01-207E22.g_64_1178

seq1  GAATTCTTATAAAATAGTTAGTTACTATTGATAAAGACAATGAAGATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAAAATAGTTAGTTACTATTGATAAAGACAATGAAGATTGC  50

seq1  CAAGAATTAATCAAGCCTCAAAGAGAGATAAAAGATGTTATGGTCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTAATCAAGCCTCAAAGAGAGATAAAAGATGTTATGGTCTTTCT  100

seq1  GAAGTTATGTAGAAATGTAGGGACATACAAATCTAGAGCAAAATTACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATGTAGAAATGTAGGGACATACAAATCTAGAGCAAAATTACCTG  150

seq1  TTTTAGGAATGTTTGCTCTACCAAAAAAAAAAAAATGATGTTGGTTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAATGTTTGCTCTACCAAAAAAAAAAAAATGATGTTGGTTAAGT  200

seq1  GGTCACTTTAAGAAGCAAAGTAAATTGTCCTTATCACAGTTCAATGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTTAAGAAGCAAAGTAAATTGTCCTTATCACAGTTCAATGCTCA  250

seq1  GAATGCAGCTGGAGCAACAGGTTCCTCCATGTGTACTTTTTGGTTGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGCTGGAGCAACAGGTTCCTCCATGTGTACTTTTTGGTTGGTGG  300

seq1  TTTAGTCTCTGGAGGCTCTGTGTGGTCTGGTTGGTTGATATTATGGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTCTGGAGGCTCTGTGTGGTCTGGTTGGTTGATATTATGGTTCT  350

seq1  TCCTATGGGATTTCAAACCTCTTAAGCTTCTTCAGTTCTTCCCCTAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGGGATTTCAAACCTCTTAAGCTTCTTCAGTTCTTCCCCTAACTT  400

seq1  CTCCATTCAGGTCCCTGTTCTCAGTTCGAGGGTTGGCTGCAAGTATCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCAGGTCCCTGTTCTCAGTTCGAGGGTTGGCTGCAAGTATCCAC  450

seq1  AGATGTATTTGTTAGGCTCTAACAGAGTCTCTTAGGAGACAGGTATATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATTTGTTAGGCTCTAACAGAGTCTCTTAGGAGACAGGTATATCA  500

seq1  GGCACCTGTCAGCAAGCACTTCTTGGCATCACCAATAGTGTCTGCGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTGTCAGCAAGCACTTCTTGGCATCACCAATAGTGTCTGCGTCTG  550

seq1  ATGCCTGCATATTGGATGGATCCCCACATGGGGCAGCCCTGGATGACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCATATTGGATGGATCCCCACATGGGGCAGCCCTGGATGACCTT  600

seq1  TCCTTCAGTCTGCTCCACTCTTAGTGTTGATTGTTTTTAAATTGTCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGTCTGCTCCACTCTTAGTGTTGATTGTTTTTAAATTGTCCTTT  650

seq1  TCGTGGGTACTAACAGGTGTTCTAATTACTAGTGGCCCCTGATATTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGGTACTAACAGGTGTTCTAATTACTAGTGGCCCCTGATATTACTC  700

seq1  AGTGTCTGATCTTTTTAAA-TTTTCAGATATAATAATCAGTCCATATTTA  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTGTCTGATCTTTTTAAATTTTTCAGATATAATAATCAGTCCATATTTA  750

seq1  TGTAGCACATCCTAAGTCATGTCAGATATAGATTATAACTCTTTCCTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCACATCCTAAGTCATGTCAGATATAGATTATAACTCTTTCCTTTT  800

seq1  GGAGGTGACTATATAATCAATACTATAAGCCTGAAAGAGGGCCTGCATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGACTATATAATCAATACTATAAGCCTGAAAGAGGGCCTGCATCA  850

seq1  CAGTCTCAAAAACCTTTCCAGCA-TTGATTTGACACATAATAGTAGATTT  898
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGTCTCAAAAACCTTTCCAGCATTTGATTTGACACATAATAGTAGATTT  900

seq1  TGGCCATGCC-TTGGGGTAATACAG-CCCATTG-ATATCAAATCTGGTGT  945
      |||||||||| |||||||||||||| ||||||| ||||||||||||||||
seq2  TGGCCATGCCTTTGGGGTAATACAGCCCCATTGAATATCAAATCTGGTGT  950

seq1  TCTTT-AGGATTCAGTAAAGAAACAGAAAAGGCTACATATACC--TTATT  992
      ||||| |||||||||||||  ||||||||| ||||||||||||  | |||
seq2  TCTTTAAGGATTCAGTAAAAGAACAGAAAA-GCTACATATACCCTTAATT  999

seq1  AT-CAAGATGAATAGGTATA-GTGTAAATGAAGTTCTTCAAA-TCCATAA  1039
      || || |||||||| ||||| ||||||||||||||||||||| |||||| 
seq2  ATCCAGGATGAATA-GTATAGGTGTAAATGAAGTTCTTCAAATTCCATA-  1047

seq1  CAATTGAAGGCCAATCTTTAGCAATA--TGTGTCGGTGTAG-ATATCCAG  1086
        | |||||||||||||| ||| |||   ||||| |||||| |||| |||
seq2  -CAGTGAAGGCCAATCTTAAGCCATAATGGTGTC-GTGTAGAATAT-CAG  1094

seq1  GTTATAAAGCTCAATTTGGCC  1107
      | |||||||||||||||||||
seq2  GGTATAAAGCTCAATTTGGCC  1115