BAC Information

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BAC

Clone NameB6Ng01-207N01
Chromosome5 (Build37)
Map Location 16,941,335 - 17,079,514
singlet/doubletdoublet
Overlap geneSpeer4f, EG630927
Upstream geneLOC668121, Hgf, EG668131, LOC626390, LOC668142, LOC100041749, LOC100041832
Downstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207N01.bB6Ng01-207N01.g
ACCGA026862GA026863
length1,1421,094
definitionB6Ng01-207N01.b B6Ng01-207N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,078,382 - 17,079,514)(16,941,335 - 16,941,931)
sequence
gaattcccgctcagtcggacccaagaaggagagttgccggagttagtgat
tagagggcagaatctttgtatctatgtagacaccgcctctgatgtccagt
aggtaggattgtctgatttttgccatatatttgagatatgtgaaaatcaa
gttaaagaagttcataatcgttgcaagattcgcctgcctgagatggtttg
cattttaaggtggactatctctgcggtatacagctaagtacatagtagac
aaggaacctaagtagattccctcaaaaaaacatgcatgaatgggcaagag
atgctacaaaaggctccacaccactcatcacttgagcaatccaaatgaaa
gccacagggagataacacttcaaagctgttgaatggttaataccacaaag
aaagaagaaaaaacttgcggacagtttgcacagactgggagatgatacga
attagggcaactattgtggaaaacggtatgaagtatctttataaactaaa
gataaaactagcatataacccctcaacccccctctaaataattacccaaa
gtacggggggtcagaagatctatatctctgtcttttcacgtcccttggtc
caacgttcataatagccagtcagcctaggtgtcactcacagtcctcatga
accaaccaagagaatgtgcctggattggggacactataccataactgcca
ctgtatatactttccagacttacaaaagaggaaacgcctacctttttcac
aaacatgaagaatgccatggttgagtggaataggcctaaagcaaacaggc
aaatgttcggtgtctttatttatctatacaattaacagccactttctcag
agaaagagattagaaaggaggctactacaggggatgtgatggaaactgag
tcaaaccagatgaatagttttgactttggtttttaaattcaatgggcaca
gcatggtgcatatgggataactgaaattggcatgcctttctatattgggt
aagaagataaggtttctaccatgtccactggaaatataaatgattattag
caattgcctcctaattagttcagaatgtcattgccactacacgttccagc
caataacaactatcattaaactatgcatataaaataagtcta
gaattctactgtaaagtaaattcccttgtgtgctgtgtggaagcattgtc
tgtcagttaaaaacctgaggcaggaaataggatgtcagagttccagtaga
gagagaaaaactctgggacagagtcaggcatgtgaagaaattccatccaa
gctctgaggagacaaaacccattgtactggctagttttgtgtcaacttga
cacagctggagttatcacagagaaaggagcttcagttggggaagtgcctc
catgagatccagctgtggggcattttctcaattagtgatcaagggggaaa
ggccccttgtgggtgatgccatctctgggctggtagtcttggttctataa
gagagcaggctgagcaagccaggggaagcaagccagtaaagaacatccct
ccatggcctctgcatcagctcttgcttcctgacctgcctgagttccagtc
ctgacttccttggtgatgaacagcagtatggaagtgtaagctgaataaac
cctttcctccccaacttgcttcttggtcatgatgtttgtgcaggaataga
aaccctgactaagacacccatgaaactgaggagaggtaaaaagccatttg
gcagaacttagaccattttaaacaagataattgagttataagctaatgag
aatgagccaaaacttgtggcctaggcatttattcatggagagtaagtctc
agagtcattagtttgtgaactggagcatatggaaaagcccacagttacat
tttacatgtggactggatggtttgaagcagggagaaagagacatggggaa
atggcttgagcttttgaaaccccaaagcccatgcctacaatgatgcagtt
cctccaacaagaccacaccttatcctaacaaggccacacctactaatccc
tgtcagtagacccactccctaaggagcaagcattcaaccatgagccttat
gggaggccattcttattaaaaccaccacattgcattttaatttataatat
attgcttatacctctataaacatgccattccactttaattcccctaacgt
tcattttcaaagttaaccaattaatctgattgctcttggaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17078382_17079514
seq2: B6Ng01-207N01.b_42_1183 (reverse)

seq1  TAGACTTAATTTTATTATGCATAGTTAAATGATAGTTG-TATTTGCTGGA  49
      ||||||| |||||| ||||||||||| ||||||||||| |||| ||||||
seq2  TAGACTT-ATTTTA-TATGCATAGTTTAATGATAGTTGTTATTGGCTGGA  48

seq1  ACGTGTAGTGGC-ATGACA-TCTGAACTTAATAAGGA-GCAATTGCTAAT  96
      |||||||||||| |||||| ||||||| |||| |||| ||||||||||||
seq2  ACGTGTAGTGGCAATGACATTCTGAAC-TAATTAGGAGGCAATTGCTAAT  97

seq1  TATCATTTAATATTTCAGGTGACAATGGTAGAAA-CTTATTCTCTTA-CC  144
       ||||||| |||||||  |||   |||||||||| |||||  ||||| ||
seq2  AATCATTT-ATATTTCCAGTGGACATGGTAGAAACCTTATCTTCTTACCC  146

seq1  AATATTGAAA-GCATGC--AATTCAGTTAT-CCATATGCACCATGCTGTG  190
      ||||| |||| ||||||  | ||||||||| |||||||||||||||||||
seq2  AATATAGAAAGGCATGCCAATTTCAGTTATCCCATATGCACCATGCTGTG  196

seq1  -CCATTGAATTT-AAAACCAAAGTC-AAACTATTCATCTGGTTTGACTCA  237
       ||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  CCCATTGAATTTAAAAACCAAAGTCAAAACTATTCATCTGGTTTGACTCA  246

seq1  GTTTCCATCACATCCCCTGTAGTAGCCTCCTTTCTAATCTCTTTCTCTGA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATCACATCCCCTGTAGTAGCCTCCTTTCTAATCTCTTTCTCTGA  296

seq1  GAAAGTGGCTGTTAATTGTATAGATAAATAAAGACACCGAACATTTGCCT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGCTGTTAATTGTATAGATAAATAAAGACACCGAACATTTGCCT  346

seq1  GTTTGCTTTAGGCCTATTCCACTCAACCATGGCATTCTTCATGTTTGTGA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTAGGCCTATTCCACTCAACCATGGCATTCTTCATGTTTGTGA  396

seq1  AAAAGGTAGGCGTTTCCTCTTTTGTAAGTCTGGAAAGTATATACAGTGGC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTAGGCGTTTCCTCTTTTGTAAGTCTGGAAAGTATATACAGTGGC  446

seq1  AGTTATGGTATAGTGTCCCCAATCCAGGCACATTCTCTTGGTTGGTTCAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGGTATAGTGTCCCCAATCCAGGCACATTCTCTTGGTTGGTTCAT  496

seq1  GAGGACTGTGAGTGACACCTAGGCTGACTGGCTATTATGAACGTTGGACC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGTGAGTGACACCTAGGCTGACTGGCTATTATGAACGTTGGACC  546

seq1  AAGGGACGTGAAAAGACAGAGATATAGATCTTCTGACCCCCCGTACTTTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACGTGAAAAGACAGAGATATAGATCTTCTGACCCCCCGTACTTTG  596

seq1  GGTAATTATTTAGAGGGGGGTTGAGGGGTTATATGCTAGTTTTATCTTTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTATTTAGAGGGGGGTTGAGGGGTTATATGCTAGTTTTATCTTTA  646

seq1  GTTTATAAAGATACTTCATACCGTTTTCCACAATAGTTGCCCTAATTCGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAAGATACTTCATACCGTTTTCCACAATAGTTGCCCTAATTCGT  696

seq1  ATCATCTCCCAGTCTGTGCAAACTGTCCGCAAGTTTTTTCTTCTTTCTTT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCCCAGTCTGTGCAAACTGTCCGCAAGTTTTTTCTTCTTTCTTT  746

seq1  GTGGTATTAACCATTCAACAGCTTTGAAGTGTTATCTCCCTGTGGCTTTC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATTAACCATTCAACAGCTTTGAAGTGTTATCTCCCTGTGGCTTTC  796

seq1  ATTTGGATTGCTCAAGTGATGAGTGGTGTGGAGCCTTTTGTAGCATCTCT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATTGCTCAAGTGATGAGTGGTGTGGAGCCTTTTGTAGCATCTCT  846

seq1  TGCCCATTCATGCATGTTTTTTTGAGGGAATCTACTTAGGTTCCTTGTCT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTCATGCATGTTTTTTTGAGGGAATCTACTTAGGTTCCTTGTCT  896

seq1  ACTATGTACTTAGCTGTATACCGCAGAGATAGTCCACCTTAAAATGCAAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTACTTAGCTGTATACCGCAGAGATAGTCCACCTTAAAATGCAAA  946

seq1  CCATCTCAGGCAGGCGAATCTTGCAACGATTATGAACTTCTTTAACTTGA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAGGCAGGCGAATCTTGCAACGATTATGAACTTCTTTAACTTGA  996

seq1  TTTTCACATATCTCAAATATATGGCAAAAATCAGACAATCCTACCTACTG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATATCTCAAATATATGGCAAAAATCAGACAATCCTACCTACTG  1046

seq1  GACATCAGAGGCGGTGTCTACATAGATACAAAGATTCTGCCCTCTAATCA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGAGGCGGTGTCTACATAGATACAAAGATTCTGCCCTCTAATCA  1096

seq1  CTAACTCCGGCAACTCTCCTTCTTGGGTCCGACTGAGCGGGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCCGGCAACTCTCCTTCTTGGGTCCGACTGAGCGGGAATTC  1142

seq1: chr5_16941335_16941931
seq2: B6Ng01-207N01.g_547_1152

seq1  AGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTG  50

seq1  TGCAGGAATAGAAACCCTGACTAAGACACCCATGAAACTGAGGAGAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAATAGAAACCCTGACTAAGACACCCATGAAACTGAGGAGAGGTA  100

seq1  AAAAGCCATTTGGCAGAACTTAGACCATTTTAAACAAGATAATTGAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCATTTGGCAGAACTTAGACCATTTTAAACAAGATAATTGAGTTA  150

seq1  TAAGCTAATGAGAATGAGCCAAAACTTGTGGCCTAGGCATTTATTCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAATGAGAATGAGCCAAAACTTGTGGCCTAGGCATTTATTCATGG  200

seq1  AGAGTAAGTCTCAGAGTCATTAGTTTGTGAACTGGAGCATATGGAAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGTCTCAGAGTCATTAGTTTGTGAACTGGAGCATATGGAAAAGC  250

seq1  CCACAGTTACATTTTACATGTGGACTGGATGGTTTGAAGCAGGGAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTACATTTTACATGTGGACTGGATGGTTTGAAGCAGGGAGAAAG  300

seq1  AGACATGGGG-AATGGCTTGAGCTTTTGAAACCCCAAAGCCCATGCCTAC  349
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGGGAAATGGCTTGAGCTTTTGAAACCCCAAAGCCCATGCCTAC  350

seq1  AATGATGCAGTTCCTCCAACAAGACCACACC-TATCCTAACAAGGCCACA  398
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATGATGCAGTTCCTCCAACAAGACCACACCTTATCCTAACAAGGCCACA  400

seq1  CCTACTAATCCCTGTCAGTAGAACCACTCCCTAAGGAGCAAGCATTCAAA  448
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  CCTACTAATCCCTGTCAGTAGACCCACTCCCTAAGGAGCAAGCATTC-AA  449

seq1  CCATGAGCC-TAT-GGAGGCCATTCTTATTAAAACCACCACAATGCA-TT  495
      ||||||||| ||| |||||||||||||||||||||||||||| |||| ||
seq2  CCATGAGCCTTATGGGAGGCCATTCTTATTAAAACCACCACATTGCATTT  499

seq1  TAATTTATAATATATTTGCTTATTACTCTAT-AACATGCCCATTCACTTT  544
      |||||||||||||| ||||||||  |||||| ||||||||  | ||||||
seq2  TAATTTATAATATA-TTGCTTATACCTCTATAAACATGCCATTCCACTTT  548

seq1  AAT--CCCTAACGTTCATTTTCCAAGTTTACCA--TAATCTTTATG-TCT  589
      |||  ||||||||||||||||| ||||| ||||  ||||||   || |||
seq2  AATTCCCCTAACGTTCATTTTCAAAGTTAACCAATTAATCTGATTGCTCT  598

seq1  TGGAATTT  597
      ||||||||
seq2  TGGAATTT  606