BAC Information

Click to search

BAC

Clone NameB6Ng01-208A21
Chromosome5 (Build37)
Map Location 126,383,944 - 126,484,447
singlet/doubletdoublet
Overlap geneLOC100039178
Upstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736
Downstream geneLOC665760, LOC100040327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208A21.bB6Ng01-208A21.g
ACCGA027039GA027040
length1,1181,119
definitionB6Ng01-208A21.b B6Ng01-208A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,483,332 - 126,484,447)(126,383,944 - 126,385,061)
sequence
gaattctgaagtagcacgagtcgctagtcgctggcctgctgatgaatcag
cattctcaatggcttcttttatgtgcttctgtacagaggccctggtggta
tgagcgctcactggccaatccaatgtaatgtgctaaccaagcacagtcta
taggcttccactatgtaagtagttgttcacatataataaagcagacactg
ttccctgaaactgtctcaagtggttcatttccacaccccttgctgtccca
cgggaacggcagtcttgtcaggggacaccctggtaacggtggtggcagag
gacccaggttcacttcccagcaccacatgggaagtaactatctgtagccc
cagttccaggggatccagtgccccccaggctctaggcatacgctgaacag
acattcatggagaaaaaataaaacacatacaacacaataaaaaatgattg
atcacttcaaagatgcatggcaacagaaggagttgttcagaggtagaata
tcaaggtttcagatcctaggaagttagagaagcagacttagaactggtgt
actctagaaacaaggtggacagggatcgggaaggagcctattgctctgct
gctgtggaaagaactgtcccgctgatccttctccttcaggatggactgtg
actcccagaagcagggagactaaagaaaccttcatgctacgccagatgtt
ttattatagcaacagaaaagtaactgttacactgcacctgagaaagcacc
ttccaggcatggcatggaggtccagaggatgtggacctactgtgaggctg
ctagaatatgccaggagctatatatggggtgactctgaattaggacttct
gacagagttaagaaatgaagatatttcccatgtagatcgctgtgacagac
tcttgagagaagcatgttaattcaggaaagatttgggtctatgttttgtc
gcgtccagcatgggtgggactgaacctgcctggtcagcaaggaagtgaag
aaaagacagacacgtgtacaaaaaaggatgggatcagtgaggctgctttg
ggcctccctacctgtacctcctcaccctttgctcagtaagtcagcttaat
gggacttatggtacctgg

gaattcaccactttgggcattcagataaaagataaaattaaataaaaaat
aaacagaaaatgcggaataaaaaatttgaagtgggatactgcaataaaat
tacaagaacaaaaaccaaactcaaacccaaatccccaaatacctcttgta
agcaaagggggcaggcaatggtggcacgtgtctttaatcccagaacttga
aaggcagaggcaggcacatccttgagttcaaggccagcctgttctacaga
gtgagttccaggacagccagggcaacacagtgagaacatgtcttgaaaaa
ccagaaaacaaacaactcaacatcaacagtagggaagaactgggcggaca
aataggctatcaggagaaaattggcttctttgatcggtttgcgtttgctc
ttcgaaggtttagggccagttttacagcatgttgataattcattttcctg
aatcttatttttttttttcttttggaccttgaaatatctaatgagctctg
agaacggggcatctatttcccttgaccagatgatgaatgtctgtgctgtc
tgaattaagcttcttcagcccaagtggcaggaggcatgtgtggctctctt
aagcaacagagaggttattggagcaatgcctagtggccggttccaaaatt
tgacaggaaaactggagagcgaggcctccaaggaggaacctccaggccct
ctggtacaataaaacatcccaaatgttgccatgggaagctcagaattttt
cccgtttcttgtattgaccacactgttgtaaatgtctgccttctgttaat
caattgcaatcactgtgcgtcagccttaacgaaccagaacctatttacag
cgtcacccggtttccatgtagagctgcaaacacttgctagactgaagata
tgttttcctccctccaaaggggaagaggtggataatgattttccaggcgg
ggcctcctctttctgcatttgcaatctctctacactcactttccacccaa
ctgccttttaatacaacatttgcttcccacatggtaggaattatgcatgc
tctagttggagggagccataaagttccctgcagagtcaatgcaagcacag
catctggaacgccacgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_126483332_126484447
seq2: B6Ng01-208A21.b_46_1163 (reverse)

seq1  CCAGGTACCAATAAGT-CCATTAGGCTGACTTACTGAGCAAAGGGTGAGG  49
      ||||||||| |||||| |||||| ||||||||||||||||||||||||||
seq2  CCAGGTACC-ATAAGTCCCATTAAGCTGACTTACTGAGCAAAGGGTGAGG  49

seq1  AGGTACAGGTA-GGAGGCCCAAAGCAGCCTCACTGATCCCATCC-TTTTT  97
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  AGGTACAGGTAGGGAGGCCCAAAGCAGCCTCACTGATCCCATCCTTTTTT  99

seq1  GTACACGTGTCTGTCTTTTCTTCACTTCCTTGCTGACCAGGCAGGTTCAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACGTGTCTGTCTTTTCTTCACTTCCTTGCTGACCAGGCAGGTTCAG  149

seq1  TCCCAACCATGCTGGACGCGACAAAACATAGACCCAAATCTTTCCTGAAT  197
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCATGCTGGACGCGACAAAACATAGACCCAAATCTTTCCTGAAT  199

seq1  TAACATGCTTCTCTCAAGAGTCTGTCACAGCGATCTACATGGGAAATATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGCTTCTCTCAAGAGTCTGTCACAGCGATCTACATGGGAAATATC  249

seq1  TTCATTTCTTAACTCTGTCAGAAGTCCTAATTCAGAGTCACCCCATATAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTTAACTCTGTCAGAAGTCCTAATTCAGAGTCACCCCATATAT  299

seq1  AGCTCCTGGCATATTCTAGCAGCCTCACAGTAGGTCCACATCCTCTGGAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGGCATATTCTAGCAGCCTCACAGTAGGTCCACATCCTCTGGAC  349

seq1  CTCCATGCCATGCCTGGAAGGTGCTTTCTCAGGTGCAGTGTAACAGTTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGCCATGCCTGGAAGGTGCTTTCTCAGGTGCAGTGTAACAGTTAC  399

seq1  TTTTCTGTTGCTATAATAAAACATCTGGCGTAGCATGAAGGTTTCTTTAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTGCTATAATAAAACATCTGGCGTAGCATGAAGGTTTCTTTAG  449

seq1  TCTCCCTGCTTCTGGGAGTCACAGTCCATCCTGAAGGAGAAGGATCAGCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGCTTCTGGGAGTCACAGTCCATCCTGAAGGAGAAGGATCAGCG  499

seq1  GGACAGTTCTTTCCACAGCAGCAGAGCAATAGGCTCCTTCCCGATCCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTCTTTCCACAGCAGCAGAGCAATAGGCTCCTTCCCGATCCCTG  549

seq1  TCCACCTTGTTTCTAGAGTACACCAGTTCTAAGTCTGCTTCTCTAACTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTGTTTCTAGAGTACACCAGTTCTAAGTCTGCTTCTCTAACTTC  599

seq1  CTAGGATCTGAAACCTTGATATTCTACCTCTGAACAACTCCTTCTGTTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATCTGAAACCTTGATATTCTACCTCTGAACAACTCCTTCTGTTGC  649

seq1  CATGCATCTTTGAAGTGATCAATCATTTTTTATTGTGTTGTATGTGTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATCTTTGAAGTGATCAATCATTTTTTATTGTGTTGTATGTGTTTT  699

seq1  ATTTTTTCTCCATGAATGTCTGTTCAGCGTATGCCTAGAGCCTGGGGGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTCCATGAATGTCTGTTCAGCGTATGCCTAGAGCCTGGGGGGC  749

seq1  ACTGGATCCCCTGGAACTGGGGCTACAGATAGTTACTTCCCATGTGGTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATCCCCTGGAACTGGGGCTACAGATAGTTACTTCCCATGTGGTGC  799

seq1  TGGGAAGTGAACCTGGGTCCTCTGCCACCACCGTTACCAGGGTGTCCCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTGAACCTGGGTCCTCTGCCACCACCGTTACCAGGGTGTCCCCT  849

seq1  GACAAGACTGCCGTTCCCGTGGGACAGCAAGGGGTGTGGAAATGAACCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGACTGCCGTTCCCGTGGGACAGCAAGGGGTGTGGAAATGAACCAC  899

seq1  TTGAGACAGTTTCAGGGAACAGTGTCTGCTTTATTATATGTGAACAACTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGTTTCAGGGAACAGTGTCTGCTTTATTATATGTGAACAACTA  949

seq1  CTTACATAGTGGAAGCCTATAGACTGTGCTTGGTTAGCACATTACATTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATAGTGGAAGCCTATAGACTGTGCTTGGTTAGCACATTACATTGG  999

seq1  ATTGGCCAGTGAGCGCTCATACCACCAGGGCCTCTGTACAGAAGCACATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCAGTGAGCGCTCATACCACCAGGGCCTCTGTACAGAAGCACATA  1049

seq1  AAAGAAGCCATTGAGAATGCTGATTCATCAGCAGGCCAGCGACTAGCGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCCATTGAGAATGCTGATTCATCAGCAGGCCAGCGACTAGCGAC  1099

seq1  TCGTGCTACTTCAGAATTC  1116
      |||||||||||||||||||
seq2  TCGTGCTACTTCAGAATTC  1118


seq1: chr5_126383944_126385061
seq2: B6Ng01-208A21.g_62_1180

seq1  GAATTCACCACTTTGGGCATTCAGATAAAAGATAAAATTAAATAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACTTTGGGCATTCAGATAAAAGATAAAATTAAATAAAAAAT  50

seq1  AAACAGAAAATGCGGAATAAAAAATTTGAAGTGGGATACTGCAATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAATGCGGAATAAAAAATTTGAAGTGGGATACTGCAATAAAAT  100

seq1  TACAAGAACAAAAACCAAACTCAAACCCAAATCCCCAAATACCTCTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAACAAAAACCAAACTCAAACCCAAATCCCCAAATACCTCTTGTA  150

seq1  AGCAAAGGGGGCAGGCAATGGTGGCACGTGTCTTTAATCCCAGAACTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGGGGCAGGCAATGGTGGCACGTGTCTTTAATCCCAGAACTTGA  200

seq1  AAGGCAGAGGCAGGCACATCCTTGAGTTCAAGGCCAGCCTGTTCTACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGGCAGGCACATCCTTGAGTTCAAGGCCAGCCTGTTCTACAGA  250

seq1  GTGAGTTCCAGGACAGCCAGGGCAACACAGTGAGAACATGTCTTGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCCAGGGCAACACAGTGAGAACATGTCTTGAAAAA  300

seq1  CCAGAAAACAAACAACTCAACATCAACAGTAGGGAAGAACTGGGCGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAACAAACAACTCAACATCAACAGTAGGGAAGAACTGGGCGGACA  350

seq1  AATAGGCTATCAGGAGAAAATTGGCTTCTTTGATCGGTTTGCGTTTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCTATCAGGAGAAAATTGGCTTCTTTGATCGGTTTGCGTTTGCTC  400

seq1  TTCGAAGGTTTAGGGCCAGTTTTACAGCATGTTGATAATTCATTTTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAGGTTTAGGGCCAGTTTTACAGCATGTTGATAATTCATTTTCCTG  450

seq1  AATCTTATTTTTTTTTTTCTTTTGGACCTTGAAATATCTAATGAGCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATTTTTTTTTTTCTTTTGGACCTTGAAATATCTAATGAGCTCTG  500

seq1  AGAACGGGGCATCTATTTCCCTTGACCAGATGATGAATGTCTGTGCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGGGGCATCTATTTCCCTTGACCAGATGATGAATGTCTGTGCTGTC  550

seq1  TGAATTAAGCTTCTTCAGCCCAAGTGGCAGGAGGCATGTGTGGCTCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAGCTTCTTCAGCCCAAGTGGCAGGAGGCATGTGTGGCTCTCTT  600

seq1  AAGCAACAGAGAGGTTATTGGAGCAATGCCTAGTGGCCGGTTCCAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACAGAGAGGTTATTGGAGCAATGCCTAGTGGCCGGTTCCAAAATT  650

seq1  TGACAGGAAAACTGGAGAGCGAGGCCTCCAAGGAGGAACCTCCAGGCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAAAACTGGAGAGCGAGGCCTCCAAGGAGGAACCTCCAGGCCCT  700

seq1  CTGGTACAATAAAACATCCCAAATGTTGCCATGGGAAGCTCAGAATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACAATAAAACATCCCAAATGTTGCCATGGGAAGCTCAGAATTTTT  750

seq1  CCCGTTTCTTGTATTGACCACACTGTTGTAAATGTCTGCCTTCTGTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTTCTTGTATTGACCACACTGTTGTAAATGTCTGCCTTCTGTTAAT  800

seq1  CAATTGCAATCACTGTGCGTCAGCCTTAACGAACCAGAACCTATTTACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCAATCACTGTGCGTCAGCCTTAACGAACCAGAACCTATTTACAG  850

seq1  CGTCACCCGGTTTCCATGTAGAGCTGCAAACACTTGCTAGACTGAAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACCCGGTTTCCATGTAGAGCTGCAAACACTTGCTAGACTGAAGATA  900

seq1  TGTTTTCCTCCCTCCAAAGGGGAAGAGGTGGATAATGATTTTCCAGGCGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTCCCTCCAAAGGGGAAGAGGTGGATAATGATTTTCCAGGCGG  950

seq1  GGCCTCCTCTTTCTGCATTTGCAATCTCTCTACACTCAC-TTCCACCCAA  999
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCCTCCTCTTTCTGCATTTGCAATCTCTCTACACTCACTTTCCACCCAA  1000

seq1  CTGCTTTTAAATACAACA-TTGCTTCCCACATGGTAGGAA-TATGCATGC  1047
      |||| ||| ||||||||| ||||||||||||||||||||| |||||||||
seq2  CTGCCTTTTAATACAACATTTGCTTCCCACATGGTAGGAATTATGCATGC  1050

seq1  TCTAGGTTTGGAGGGGAGCCATAAAG-TCCCTGCAGAGTCAATGCAAGCA  1096
      |||||  ||||| ||||||||||||| |||||||||||||||||||||||
seq2  TCTAG--TTGGA-GGGAGCCATAAAGTTCCCTGCAGAGTCAATGCAAGCA  1097

seq1  CAGGCTCT-GACCGCCCACGCTA  1118
      |||  ||| || || ||||||||
seq2  CAGCATCTGGAACG-CCACGCTA  1119


| Home | SequenceCutter | Blast | Download |