BAC Information

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BAC

Clone NameB6Ng01-208C12
Chromosome5 (Build37)
Map Location 111,460,232 - 111,645,573
singlet/doubletdoublet
Overlap geneTtc28
Upstream geneLOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2
Downstream genePitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208C12.bB6Ng01-208C12.g
ACCGA027109GA027110
length1,2101,103
definitionB6Ng01-208C12.b B6Ng01-208C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,644,384 - 111,645,573)(111,460,232 - 111,461,329)
sequence
gaattctggatctctccttctgctttgccaggagctccaactcagacagg
aagttctgcagtgccagctgtcagcccctctgtgtatttttttgtatttg
ccctgagtcctggtttcgtatttctactgcatcatcatatgatgttatga
gtgatgtagaatcctttacgggataagacaatttgcagacaactgggcaa
tggtccctttacgcccactgagcccagctttaggtatcaagctgtcggtc
tgcacttgggggcaagaataaataagacgggggattcttgggtgggaaaa
gcccccgcagttcccaatgcagaaagaatgaatcgtgagctggctcgccc
cacccaccaaccctttccagaagaacacacagcagtggcaactctcctct
cagtcagcaggcaagcagccaccgcccaagtcctgcgcaccctggaggga
cctcagtggttgccctaaaggtctttcctccgcggagcccacctcaccct
ctctacctctgcgtcatccctagtagggacgcactgtcatcaatcattca
ttttccagatggagaaagtgaagtcacaagaagggagtggcctagctgaa
gtccgacagctggttactgttagtccggacctgtttcccatctcacctcc
ccggagtcaggctctgccagccctctggagtgaggaacacctggatttat
taggctccgttagctctgacataaactgctgagcaacctttaaatgtgaa
cactcactgtgttaccacagtgcatgccacgagtagagggtcactgtgac
aacccggggtgacaggtgtaggaatacccacccatccccactgtgtgggt
gaactcactccaaagctgccaaaggtttttctgcatcaaagaaaaaaaga
gagagagagaaatgctttcaccttgtactttgggtaacacaaaacataca
gatggccacggagcaagttttgcatcaagagatctgtatttctttgatga
ttggcctctttattctgcaagtcgattttacaggactgcttttggagaga
ggaattaatcaccagtcattaataagaacccatccacttggctttagtgt
gaatttaaaaaaaatcatttaataacttaattcagtatatgaaataatgt
ttcggttaacttacttcgagaataccctcattccatgaccaaaaaaaaaa
atatttgttg
gaattcagtggagtaatgcattcatagttaggctgtggctgtggccagtt
actctgaacaggtcgagctgggaggaaggatgtgggcagttggaggcaat
aggtgaaggagtcactcatcctacttgatacggttctcatcaaagaaggc
gcatgaggtctgctcaccagatcttccttagtccatcgtcaaacaacgga
tgaagatcaatgagaggagtcagtgaagggatgaaggagcttacacccgc
acaccccacccacacacccatacatctgagtccttaactactgtctgccc
tgtgtggggcctgacactctttgttatggggacagcatgggaccttgaga
cccaacagagctgaggattggctcaatcaaacaagactgagaatggagct
ggtgtgacgctgccgtctgtaaccttgctcagatctgtcatcctgaaggt
ggttcatggaaatgggagacagagactgaagagatggcccagtggttcag
ggcgtgtcctgctctttcagaggaccctcatgtggatcctggtgcccatg
tgaacagctcacaaccacctgtaactgaagctcggggaggcggggcggag
ggaggactcaacacctctggcctccaggggcatctgtcctgcaaactccc
ccacaaggactatacccaggcacatgattatataaaggaaaaaaaggaaa
agtagtggctaagaagtcacaactctttgccttttgagattctgctactc
caggcatatgtgcttagggggatgttattatggatggattttcacttttg
ttattataaaatggttattgtccaagcttaatgtccacttcattggtgga
caatagccccatttgtcgaaaccattatagatcagggactctctcttggg
tgttttcttttgggttctcagtcggttccttagccgagccatgactggaa
gcattttgccaaggacttgctcactggaccttcaacagtacagttccact
gatatcccgccagagttcagtctacctctactgtctctgtttgaagatga
ctatggcacaatttgtgagaagcagctctggtattgaagacggaagatga
tgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_111644384_111645573
seq2: B6Ng01-208C12.b_43_1252 (reverse)

seq1  CAAC-AATATTTTTTTTTTTGTTTAATGGATGA-GGTA-TCTCTGAATTA  47
      |||| |||||||||||||||| | |  | |||| |||| ||||  | | |
seq2  CAACAAATATTTTTTTTTTTGGTCATGGAATGAGGGTATTCTCGAAGTAA  50

seq1  GTTA--CG-AACA-TATTTC-TATACTGAATAAATTTTATTAATGATTTT  92
      ||||  || |||| |||||| |||||||||| || ||  | |||||||||
seq2  GTTAACCGAAACATTATTTCATATACTGAATTAAGTTATTAAATGATTTT  100

seq1  TTTTAAATCACCACT-AAGCC-AGTTGATGTG-TCTTATTAATGACTGGT  139
      ||||||||   |||| ||||| ||| |||| | |||||||||||||||||
seq2  TTTTAAATTCACACTAAAGCCAAGTGGATGGGTTCTTATTAATGACTGGT  150

seq1  GAT--AATCCTCTCT-CAAAAGCAGTCCTGTAAAATCGAC-TGCAGA--T  183
      |||  | |||||||| |||||||||||||||||||||||| ||||||   
seq2  GATTAATTCCTCTCTCCAAAAGCAGTCCTGTAAAATCGACTTGCAGAATA  200

seq1  AAGAGGCCAATCATCAAAGAAATACAGATCTCTTGATGC-AAACCTGCTC  232
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  AAGAGGCCAATCATCAAAGAAATACAGATCTCTTGATGCAAAACTTGCTC  250

seq1  CGTGGCCATCTGTATGTTTTGTGTTA-CCAAAGTACAAGGTGAAAGCA-T  280
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  CGTGGCCATCTGTATGTTTTGTGTTACCCAAAGTACAAGGTGAAAGCATT  300

seq1  TCTCTCTCTCTCTTTTTTTCTTTGATGCAGAAAAACCTTTGGCAGCTTTG  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTTTTTTTCTTTGATGCAGAAAAACCTTTGGCAGCTTTG  350

seq1  GAGTGAGTTCACCCACACAGTGGGGATGGGTGGGTATTCCTACACCTGTC  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTTCACCCACACAGTGGGGATGGGTGGGTATTCCTACACCTGTC  400

seq1  ACCCCGGGTTGTCACAGTGACCCTCTACTCGTGGCATGCACTGTGGTAAC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGGGTTGTCACAGTGACCCTCTACTCGTGGCATGCACTGTGGTAAC  450

seq1  ACAGTGAGTGTTCACATTTAAAGGTTGCTCAGCAGTTTATGTCAGAGCTA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGTGTTCACATTTAAAGGTTGCTCAGCAGTTTATGTCAGAGCTA  500

seq1  ACGGAGCCTAATAAATCCAGGTGTTCCTCACTCCAGAGGGCTGGCAGAGC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGCCTAATAAATCCAGGTGTTCCTCACTCCAGAGGGCTGGCAGAGC  550

seq1  CTGACTCCGGGGAGGTGAGATGGGAAACAGGTCCGGACTAACAGTAACCA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCGGGGAGGTGAGATGGGAAACAGGTCCGGACTAACAGTAACCA  600

seq1  GCTGTCGGACTTCAGCTAGGCCACTCCCTTCTTGTGACTTCACTTTCTCC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCGGACTTCAGCTAGGCCACTCCCTTCTTGTGACTTCACTTTCTCC  650

seq1  ATCTGGAAAATGAATGATTGATGACAGTGCGTCCCTACTAGGGATGACGC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAAAATGAATGATTGATGACAGTGCGTCCCTACTAGGGATGACGC  700

seq1  AGAGGTAGAGAGGGTGAGGTGGGCTCCGCGGAGGAAAGACCTTTAGGGCA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGAGAGGGTGAGGTGGGCTCCGCGGAGGAAAGACCTTTAGGGCA  750

seq1  ACCACTGAGGTCCCTCCAGGGTGCGCAGGACTTGGGCGGTGGCTGCTTGC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGGTCCCTCCAGGGTGCGCAGGACTTGGGCGGTGGCTGCTTGC  800

seq1  CTGCTGACTGAGAGGAGAGTTGCCACTGCTGTGTGTTCTTCTGGAAAGGG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACTGAGAGGAGAGTTGCCACTGCTGTGTGTTCTTCTGGAAAGGG  850

seq1  TTGGTGGGTGGGGCGAGCCAGCTCACGATTCATTCTTTCTGCATTGGGAA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGGTGGGGCGAGCCAGCTCACGATTCATTCTTTCTGCATTGGGAA  900

seq1  CTGCGGGGGCTTTTCCCACCCAAGAATCCCCCGTCTTATTTATTCTTGCC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGGGGCTTTTCCCACCCAAGAATCCCCCGTCTTATTTATTCTTGCC  950

seq1  CCCAAGTGCAGACCGACAGCTTGATACCTAAAGCTGGGCTCAGTGGGCGT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCAGACCGACAGCTTGATACCTAAAGCTGGGCTCAGTGGGCGT  1000

seq1  AAAGGGACCATTGCCCAGTTGTCTGCAAATTGTCTTATCCCGTAAAGGAT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGACCATTGCCCAGTTGTCTGCAAATTGTCTTATCCCGTAAAGGAT  1050

seq1  TCTACATCACTCATAACATCATATGATGATGCAGTAGAAATACGAAACCA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCACTCATAACATCATATGATGATGCAGTAGAAATACGAAACCA  1100

seq1  GGACTCAGGGCAAATACAAAAAAATACACAGAGGGGCTGACAGCTGGCAC  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGGGCAAATACAAAAAAATACACAGAGGGGCTGACAGCTGGCAC  1150

seq1  TGCAGAACTTCCTGTCTGAGTTGGAGCTCCTGGCAAAGCAGAAGGAGAGA  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACTTCCTGTCTGAGTTGGAGCTCCTGGCAAAGCAGAAGGAGAGA  1200

seq1  TCCAGAATTC  1190
      ||||||||||
seq2  TCCAGAATTC  1210

seq1: chr5_111460232_111461329
seq2: B6Ng01-208C12.g_66_1168

seq1  GAATTCAGTGGAGTAATGCATTCATAGTTAGGCTGTGGCTGTGGCCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGAGTAATGCATTCATAGTTAGGCTGTGGCTGTGGCCAGTT  50

seq1  ACTCTGAACAGGTCGAGCTGGGAGGAAGGATGTGGGCAGTTGGAGGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAACAGGTCGAGCTGGGAGGAAGGATGTGGGCAGTTGGAGGCAAT  100

seq1  AGGTGAAGGAGTCACTCATCCTACTTGATACGGTTCTCATCAAAGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAGGAGTCACTCATCCTACTTGATACGGTTCTCATCAAAGAAGGC  150

seq1  GCATGAGGTCTGCTCACCAGATCTTCCTTAGTCCATCGTCAAACAACGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGGTCTGCTCACCAGATCTTCCTTAGTCCATCGTCAAACAACGGA  200

seq1  TGAAGATCAATGAGAGGAGTCAGTGAAGGGATGAAGGAGCTTACACCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATCAATGAGAGGAGTCAGTGAAGGGATGAAGGAGCTTACACCCGC  250

seq1  ACACCCCACCCACACACCCATACATCTGAGTCCTTAACTACTGTCTGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCACCCACACACCCATACATCTGAGTCCTTAACTACTGTCTGCCC  300

seq1  TGTGTGGGGCCTGACACTCTTTGTTATGGGGACAGCATGGGACCTTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGGCCTGACACTCTTTGTTATGGGGACAGCATGGGACCTTGAGA  350

seq1  CCCAACAGAGCTGAGGATTGGCTCAATCAAACAAGACTGAGAATGGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGAGCTGAGGATTGGCTCAATCAAACAAGACTGAGAATGGAGCT  400

seq1  GGTGTGACGCTGCCGTCTGTAACCTTGCTCAGATCTGTCATCCTGAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGACGCTGCCGTCTGTAACCTTGCTCAGATCTGTCATCCTGAAGGT  450

seq1  GGTTCATGGAAATGGGAGACAGAGACTGAAGAGATGGCCCAGTGGTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGGAAATGGGAGACAGAGACTGAAGAGATGGCCCAGTGGTTCAG  500

seq1  GGCGTGTCCTGCTCTTTCAGAGGACCCTCATGTGGATCCTGGTGCCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTCCTGCTCTTTCAGAGGACCCTCATGTGGATCCTGGTGCCCATG  550

seq1  TGAACAGCTCACAACCACCTGTAACTGAAGCTCGGGGAGGCGGGGCGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCTCACAACCACCTGTAACTGAAGCTCGGGGAGGCGGGGCGGAG  600

seq1  GGAGGACTCAACACCTCTGGCCTCCAGGGGCATCTGTCCTGCAAACTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACTCAACACCTCTGGCCTCCAGGGGCATCTGTCCTGCAAACTCCC  650

seq1  CCACAAGGACTATACCCAGGCACATGATTATATAAAGGAAAAAAAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGACTATACCCAGGCACATGATTATATAAAGGAAAAAAAGGAAA  700

seq1  AGTAGTGGCTAAGAAGTCACAACTCTTTGCCTTTTGAGATTCTGCTACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGGCTAAGAAGTCACAACTCTTTGCCTTTTGAGATTCTGCTACTC  750

seq1  CAGGCATATGTGCTTAGGGGGATGTTATTATGGATGGATTTTCACTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATATGTGCTTAGGGGGATGTTATTATGGATGGATTTTCACTTTTG  800

seq1  TTATTATAAAATGGTTATTGTCCAAGCTTAATGTCCACTTCATTGGTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAAAATGGTTATTGTCCAAGCTTAATGTCCACTTCATTGGTGGA  850

seq1  CAATAGCCCCATTTGTCGAAACCA-TATAGATCAGGGACTCTCTCTTGGG  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAATAGCCCCATTTGTCGAAACCATTATAGATCAGGGACTCTCTCTTGGG  900

seq1  TTGTTTC-TTTGGGTTCTCAGTCCGTTCCTTAGCCGAGGCCATGACTGGA  948
      |  |||| ||||||||||||||| ||||||||||||| ||||||||||||
seq2  TGTTTTCTTTTGGGTTCTCAGTCGGTTCCTTAGCCGA-GCCATGACTGGA  949

seq1  AGCA-TTTGCCCAGGAC-TGCTCACTGGACCTCCAACAGTACAG-TCCAC  995
      |||| |||||| ||||| |||||||||||||| ||||||||||| |||||
seq2  AGCATTTTGCCAAGGACTTGCTCACTGGACCTTCAACAGTACAGTTCCAC  999

seq1  TGATAATCCGCCAGAGTCAGGTCTA-CTCTACTGTCTCTGTTTTGAAGAT  1044
      |||||  ||||||||||   ||||| |||||||||||||| |||||||||
seq2  TGATATCCCGCCAGAGTTCAGTCTACCTCTACTGTCTCTG-TTTGAAGAT  1048

seq1  GACTATGGCAC-ATTTGTGAGAAGCAGCTCTGGGATTGAGGAAGGAAGAT  1093
      ||||||||||| ||||||||||||||||||||| ||||| || |||||||
seq2  GACTATGGCACAATTTGTGAGAAGCAGCTCTGGTATTGAAGACGGAAGAT  1098

seq1  GATGT  1098
      |||||
seq2  GATGT  1103