BAC Information

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BAC

Clone NameB6Ng01-208L19
Chromosome5 (Build37)
Map Location 92,644,251 - 92,775,648
singlet/doubletdoublet
Overlap geneU90926, Ppef2, Asahl, Sdad1, Cxcl9
Upstream geneBtc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605
Downstream geneCxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208L19.bB6Ng01-208L19.g
ACCGA027536GA027537
length8381,118
definitionB6Ng01-208L19.b B6Ng01-208L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,644,251 - 92,645,085)(92,774,514 - 92,775,648)
sequence
gaattcttaagtttgaagccatatattttataagacaaagttatttatga
ttgaaaaaagaaaagttaccagtatgaccaggaaggacggagtatctggt
aatcttgagttcttttgaagcctcattcagacaatctgaatacgaacata
tatatatatatgtgtgtgtgtgtgtgtgtgtgtgtaagatcagcacagta
aaaagctctgatgaccctatttacatatgatgagatggattccccacctc
attccttaaggggctaagatgttgcttcctgtttggttaacacaactttg
tggttattcatgacacacgaataattgtttcatcgtattgggttttgctt
atgaataatgagaattgcaacaactagaaaattactataatgcatgagta
gttcagacaggggttatactttgagaatttcaaccaaaaatatgtaaaat
atttttttaccatgtaaaatatttcaaccataaaatatgtacaggctgca
tccgtatgggctttgccctgggtctcactgggcgggagacagaagcttgg
catagatgtataagccttgcacaaaggctcccctgtcctgtccaacctca
gcatggtcatgttgcctcaggtgttgggggggtcccatccctacaaagac
ctccagagtctaggctctagctgaattccggccacaagactaaaggcaat
gtgttctcttttcagcaaaatctccttccattctctgtagacttgaaagg
atagtcacttcctttgtcttgattcttggagtcgggatcaaatgaagcct
aaaagtgaggtggactaactccatgcaatagttaactt
gaattctttcagagatttagagactcaatggcctgaacaagaagttgggg
tgggtaggagacaaacaagtcaggagaactaccacactacttcttggttt
agcctccttcgaggctgatcgtgtaggcttcctgtgactggtgaggcaaa
aagggaaaaggcctgagtctcagtggaccctgtcctgatgagttttcact
gtcaactccacacagctgagagtccctgggaagaaggtgggcttgtgtgg
gtgagcagactggcctgtggccatgtgtggctgatcgccttgactgctcc
tcagcccactcagggcagtgccaccctgaccaggtggtcctgggttacat
aagaaaactagttgagcatgagccaggggaagcaaaccagagtgctggcc
agcaagcagccttcctccatggtttctgctccagcctcctgccccggctt
cctgcccttagcaatagactgctaccaggaaatatgagcttacaaaagtc
cttatgttgctttgggtcagagcattggtcacagcaacagaaagaaaacc
agaacagactcccagatccaaatttctctaaggcatctccaccatgatgc
tgcatagaagactgcacaggaagcgatcaattcatttccctcctatctct
gtgtcttctcctctattttatagacttgactgtaccaccatctactcagt
tccccagacaagaaacctccattacaacttcttcctcacctcctctgtcc
aacgtgtgaacaaggagatcctgcaacacaactgtgtcaattcttagctt
caggactgtacgaagaattcccatggggctcagcaggtgcaggcacctga
caaagtctgaagaccctgagttcagtccccaggacccgaggacataatgt
cctcatacctgcatcccatgggatgtgtgcacattccttactcaactcac
tgcacgcgcgcgcgcgcgcacacacacacacacactctcacacacacaga
gtaaaaaatctaaacatctcacagataatcagacagccagtgaaaaatag
tagatttcccagagttaaaaaaataacgaaactaaaggccaggcctgaat
cctgatgggagaaatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_92644251_92645085
seq2: B6Ng01-208L19.b_46_883

seq1  GAATTCTTAAGTTTGAAGCCATATATTTTATAAGACAAAGTTATTTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGTTTGAAGCCATATATTTTATAAGACAAAGTTATTTATGA  50

seq1  TTGAAAAAAGAAAAGTTACCAGTATGACCAGGAAGGACGGAGTATCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAAGAAAAGTTACCAGTATGACCAGGAAGGACGGAGTATCTGGT  100

seq1  AATCTTGAGTTCTTTTGAAGCCTCATTCAGACAATCTGAATACGAACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGAGTTCTTTTGAAGCCTCATTCAGACAATCTGAATACGAACATA  150

seq1  TATATATATATGTGTGTGTGTGTGTGTGTGTGTGTAAGATCAGCACAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATGTGTGTGTGTGTGTGTGTGTGTGTAAGATCAGCACAGTA  200

seq1  AAAAGCTCTGATGACCCTATTTACATATGATGAGATGGATTCCCCACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCTGATGACCCTATTTACATATGATGAGATGGATTCCCCACCTC  250

seq1  ATTCCTTAAGGGGCTAAGATGTTGCTTCCTGTTTGGTTAACACAACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTAAGGGGCTAAGATGTTGCTTCCTGTTTGGTTAACACAACTTTG  300

seq1  TGGTTATTCATGACACACGAATAATTGTTTCATCGTATTGGGTTTTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATTCATGACACACGAATAATTGTTTCATCGTATTGGGTTTTGCTT  350

seq1  ATGAATAATGAGAATTGCAACAACTAGAAAATTACTATAATGCATGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAATGAGAATTGCAACAACTAGAAAATTACTATAATGCATGAGTA  400

seq1  GTTCAGACAGGGGTTATACTTTGAGAATTTCAACCAAAAATATGTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGACAGGGGTTATACTTTGAGAATTTCAACCAAAAATATGTAAAAT  450

seq1  ATTTTTTTACCATGTAAAATATTTCAACCATAAAATATGTACAGGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTACCATGTAAAATATTTCAACCATAAAATATGTACAGGCTGCA  500

seq1  TCCGTATGGGCTTTGCCCTGGGTCTCACTGGGCGGGAGACAGAAGCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTATGGGCTTTGCCCTGGGTCTCACTGGGCGGGAGACAGAAGCTTGG  550

seq1  CATAGATGTATAAGCCTTGCACAAAGGCTCCCCTGTCCTGTCCAACCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGTATAAGCCTTGCACAAAGGCTCCCCTGTCCTGTCCAACCTCA  600

seq1  GCATGGTCATGTTGCCTCAGGTGTTGGGGGGGTCCCATCCCTACAAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTCATGTTGCCTCAGGTGTTGGGGGGGTCCCATCCCTACAAAGAC  650

seq1  CTCCAGAGTCTAGGCTCTAGCTGAATTCCGGCCACAAGACTAAAGGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGTCTAGGCTCTAGCTGAATTCCGGCCACAAGACTAAAGGCAAT  700

seq1  GTGTTCTC-TTTCAGCAAAATCTCCTTCCATTCTCTGTAGACTTGAAAGG  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCTTTTCAGCAAAATCTCCTTCCATTCTCTGTAGACTTGAAAGG  750

seq1  ATAGTCACTTCCTTTGTCTTGATTC-TAGAGTCGGGATCAAATGAAGCCT  798
      ||||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  ATAGTCACTTCCTTTGTCTTGATTCTTGGAGTCGGGATCAAATGAAGCCT  800

seq1  AAAAGTGAGGTGGACTAACT-CATGCAATAGTTAACTT  835
      |||||||||||||||||||| |||||||||||||||||
seq2  AAAAGTGAGGTGGACTAACTCCATGCAATAGTTAACTT  838

seq1: chr5_92774514_92775648
seq2: B6Ng01-208L19.g_66_1183 (reverse)

seq1  AGCATCTTCTCCCATCAGGGATCAGGGGCTGTGCTTTTTGTTTTTTGTTA  50
      ||||| |||||||||||||  ||| || ||| || ||| |  ||| ||||
seq2  AGCAT-TTCTCCCATCAGGATTCA-GGCCTG-GCCTTTAG--TTTCGTTA  45

seq1  TTTTTTTTTACCTTCTGTGAAATTCTTACTATTTTTCAACTGCTGGTCTG  100
        |||||||| | |||| |||||   ||||||||||| ||||   |||||
seq2  --TTTTTTTAAC-TCTGGGAAAT--CTACTATTTTTC-ACTGGCTGTCTG  89

seq1  ATTTTATCTGTGAGAATTGTTTAGATTTTTTACTCTGTGTGTGTGTGTGT  150
      |  ||||||||||||  |||||||||||||||||||||||||||| | ||
seq2  A--TTATCTGTGAGA--TGTTTAGATTTTTTACTCTGTGTGTGTGAGAGT  135

seq1  GTGTGTGTGTGTGTGCGCGCGCGCGCGCGTGCAGTGAGTTGAGGTAGGGA  200
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  GTGTGTGTGTGTGTGCGCGCGCGCGCGCGTGCAGTGAGTTGA-GTAAGGA  184

seq1  ATGTGCACACATCCCATGGGATGCAGGTATGAGGACATTTATGTCCTCGG  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTGCACACATCCCATGGGATGCAGGTATGAGGACA-TTATGTCCTCGG  233

seq1  GTCCTGGGGACTGAACTCAGGGTCTTCAGACTTTGTCAGGTGCCTGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGGACTGAACTCAGGGTCTTCAGACTTTGTCAGGTGCCTGCACC  283

seq1  TGCTGAGCCCCATGGGAATTCTTCGTACAGTCCTGAAGCTAAGAATTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCCCCATGGGAATTCTTCGTACAGTCCTGAAGCTAAGAATTGAC  333

seq1  ACAGTTGTGTTGCAGGATCTCCTTGTTCACACGTTGGACAGAGGAGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTGTTGCAGGATCTCCTTGTTCACACGTTGGACAGAGGAGGTGA  383

seq1  GGAAGAAGTTGTAATGGAGGTTTCTTGTCTGGGGAACTGAGTAGATGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGTTGTAATGGAGGTTTCTTGTCTGGGGAACTGAGTAGATGGTG  433

seq1  GTACAGTCAAGTCTATAAAATAGAGGAGAAGACACAGAGATAGGAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTCAAGTCTATAAAATAGAGGAGAAGACACAGAGATAGGAGGGAA  483

seq1  ATGAATTGATCGCTTCCTGTGCAGTCTTCTATGCAGCATCATGGTGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGATCGCTTCCTGTGCAGTCTTCTATGCAGCATCATGGTGGAGA  533

seq1  TGCCTTAGAGAAATTTGGATCTGGGAGTCTGTTCTGGTTTTCTTTCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGAGAAATTTGGATCTGGGAGTCTGTTCTGGTTTTCTTTCTGTT  583

seq1  GCTGTGACCAATGCTCTGACCCAAAGCAACATAAGGACTTTTGTAAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACCAATGCTCTGACCCAAAGCAACATAAGGACTTTTGTAAGCTC  633

seq1  ATATTTCCTGGTAGCAGTCTATTGCTAAGGGCAGGAAGCCGGGGCAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCTGGTAGCAGTCTATTGCTAAGGGCAGGAAGCCGGGGCAGGAG  683

seq1  GCTGGAGCAGAAACCATGGAGGAAGGCTGCTTGCTGGCCAGCACTCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGCAGAAACCATGGAGGAAGGCTGCTTGCTGGCCAGCACTCTGGT  733

seq1  TTGCTTCCCCTGGCTCATGCTCAACTAGTTTTCTTATGTAACCCAGGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCCCTGGCTCATGCTCAACTAGTTTTCTTATGTAACCCAGGACC  783

seq1  ACCTGGTCAGGGTGGCACTGCCCTGAGTGGGCTGAGGAGCAGTCAAGGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTCAGGGTGGCACTGCCCTGAGTGGGCTGAGGAGCAGTCAAGGCG  833

seq1  ATCAGCCACACATGGCCACAGGCCAGTCTGCTCACCCACACAAGCCCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCACACATGGCCACAGGCCAGTCTGCTCACCCACACAAGCCCACC  883

seq1  TTCTTCCCAGGGACTCTCAGCTGTGTGGAGTTGACAGTGAAAACTCATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCAGGGACTCTCAGCTGTGTGGAGTTGACAGTGAAAACTCATCA  933

seq1  GGACAGGGTCCACTGAGACTCAGGCCTTTTCCCTTTTTGCCTCACCAGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGTCCACTGAGACTCAGGCCTTTTCCCTTTTTGCCTCACCAGTC  983

seq1  ACAGGAAGCCTACACGATCAGCCTCGAAGGAGGCTAAACCAAGAAGTAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGCCTACACGATCAGCCTCGAAGGAGGCTAAACCAAGAAGTAGT  1033

seq1  GTGGTAGTTCTCCTGACTTGTTTGTCTCCTACCCACCCCAACTTCTTGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGTTCTCCTGACTTGTTTGTCTCCTACCCACCCCAACTTCTTGTT  1083

seq1  CAGGCCATTGAGTCTCTAAATCTCTGAAAGAATTC  1135
      |||||||||||||||||||||||||||||||||||
seq2  CAGGCCATTGAGTCTCTAAATCTCTGAAAGAATTC  1118